mRNA_M-pyrifera_M_contig74645.17659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74645.17659.1
Unique NamemRNA_M-pyrifera_M_contig74645.17659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A8J2P346_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P346_9HEXA)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            IE+ + C+ L +KD+ S++D    V  +   +G+WE    TEVV+DNLNP F  + K+DY FEE+Q++RF  YD D
Sbjct:   17 IEISISCKNLLDKDVFSRSDPMCVVYTQPWTSGQWEEYMRTEVVWDNLNPEFATKVKIDYRFEEEQSIRFVVYDID 92          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A078AC19_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AC19_STYLE)

HSP 1 Score: 72.8 bits (177), Expect = 3.190e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            +E+Y+  + L+N DLLSK+D   ++ +R      W  LG TEV+ DNLNPVF   FK+ Y FE  Q LRF   D D
Sbjct:   11 VELYISAQHLKNLDLLSKSDPMCRILIRTDTKSAWSKLGETEVIKDNLNPVFKTNFKIFYQFESHQYLRFEMLDED 86          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: L7MKA2_RHIPC (Putative copine (Fragment) n=5 Tax=Rhipicephalus TaxID=426455 RepID=L7MKA2_RHIPC)

HSP 1 Score: 72.4 bits (176), Expect = 4.380e-13
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 TCIEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            T +E+ + C KL+ KDLLSK+D    + +RH     W  +G TE++ D ++P F ++F +DY+FEE+Q L F  YD D
Sbjct:   41 TKVEISVACRKLKQKDLLSKSDPMCVLFMRHYETAPWREVGRTEMIRDTIDPDFVNKFLVDYYFEERQHLMFKVYDVD 118          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A1R2CSR6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CSR6_9CILI)

HSP 1 Score: 72.4 bits (176), Expect = 4.390e-13
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 TCIEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYD 228
            T +++++ C KL++ +  SK+D F++V  RH R   W  +G TEV++DNLNP F   F +DY+FEEQ+ L F  +D
Sbjct:    9 TKVQLFISCRKLKDVETFSKSDPFVEVFERHSR-NEWIKVGQTEVIWDNLNPDFIKNFVLDYYFEEQKYLFFKVFD 83          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: I7M1V6_TETTS (Copine protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M1V6_TETTS)

HSP 1 Score: 72.0 bits (175), Expect = 6.030e-13
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            +E+++ C  L +KD+LSK+D F+ +++++ +  +W  L  TEV+ DNLNP F+    +DY FE QQ +RF  +DYD
Sbjct:   24 VEIFISCRSLTDKDVLSKSDPFVIMQIQNPQTKQWGELFRTEVIMDNLNPNFSKSCIVDYIFEIQQNVRFQVFDYD 99          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: J9G7J4_9SPIT (Copine family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9G7J4_9SPIT)

HSP 1 Score: 71.2 bits (173), Expect = 1.110e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            + +++ C KL+N D+LSK+D   +V ++      W L G TEVV +NLNP F+   + DY+FE +Q +RF  YD D
Sbjct:   13 VSIFISCRKLKNLDILSKSDPQCEVFIKDRHTSSWALAGKTEVVNNNLNPDFSKFIECDYYFEREQMIRFDVYDID 88          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A1R2C1K1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C1K1_9CILI)

HSP 1 Score: 70.9 bits (172), Expect = 1.530e-12
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYD 228
            + +++KC  L++ ++ SK+D F++V  R  R  +W  +G TEVV+DNLNP F   F++DY+FEEQ+ L+F  +D
Sbjct:   11 VHLFIKCSALKDVEVFSKSDPFVEVYER-ARETQWNKVGQTEVVWDNLNPEFITCFELDYYFEEQKYLQFKVFD 83          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A1R2C7G6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C7G6_9CILI)

HSP 1 Score: 70.5 bits (171), Expect = 2.090e-12
Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYD 228
            +++++ C KL++ +  SK+D F++V  RH    +W  +G TEV++DNLNP F   F +DY+FEEQ+ L F  +D
Sbjct:   11 VQLFISCRKLKDVETFSKSDPFVEVFERHSN-NQWIKIGQTEVIWDNLNPDFIKNFILDYYFEEQKYLLFKVFD 83          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: UPI001CFC629E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFC629E)

HSP 1 Score: 70.1 bits (170), Expect = 2.750e-12
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 TCIEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGR---WELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            T +E+Y+ C  L+NKDLLSK+D    V++   +      W+ LG TEV  DNLNP FT  F + Y FEE Q L+F  YD D
Sbjct:   14 TKVELYISCNNLQNKDLLSKSDPCCVVKIGERQLNGDFYWQDLGRTEVQKDNLNPKFTKTFIVTYKFEEIQPLKFLLYDID 94          
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Match: A0A7S3MNL6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MNL6_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 4.630e-12
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    7 IEMYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVFTHQFKMDYHFEEQQTLRFTAYDYD 234
            + +  KCE+L N D  SK+D F     + G   RW++LG TEV++DNLNP F  +   D+HFE ++  +   YD D
Sbjct:   44 LSLGFKCEELPNMDTFSKSDPFCVFYKKTGN--RWQILGKTEVIHDNLNPEFVTKIMADFHFERKEEFKVEVYDSD 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74645.17659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2P346_9HEXA1.470e-1344.74Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A078AC19_STYLE3.190e-1346.05Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
L7MKA2_RHIPC4.380e-1342.31Putative copine (Fragment) n=5 Tax=Rhipicephalus T... [more]
A0A1R2CSR6_9CILI4.390e-1343.42Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
I7M1V6_TETTS6.030e-1342.11Copine protein n=1 Tax=Tetrahymena thermophila (st... [more]
J9G7J4_9SPIT1.110e-1242.11Copine family protein n=1 Tax=Oxytricha trifallax ... [more]
A0A1R2C1K1_9CILI1.530e-1243.24Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1R2C7G6_9CILI2.090e-1241.89Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
UPI001CFC629E2.750e-1246.91uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S3MNL6_9SPIT4.630e-1240.79Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74645contigM-pyrifera_M_contig74645:721..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog5911.EAR97862
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Copine
EggNOG OGs3ZDFG@5878,KOG1327@1,KOG1327@2759
COG Functional cat.T
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.9029148-UTR-M-pyrifera_M_contig74645:720..7321622816644.9029148-UTR-M-pyrifera_M_contig74645:720..732Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74645 721..732 +
1692278095.8165622-UTR-M-pyrifera_M_contig74645:720..7321692278095.8165622-UTR-M-pyrifera_M_contig74645:720..732Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74645 721..732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.9147413-CDS-M-pyrifera_M_contig74645:732..9541622816644.9147413-CDS-M-pyrifera_M_contig74645:732..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74645 733..954 +
1692278095.8270285-CDS-M-pyrifera_M_contig74645:732..9541692278095.8270285-CDS-M-pyrifera_M_contig74645:732..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74645 733..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74645.17659.1prot_M-pyrifera_M_contig74645.17659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74645 733..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74645.17659.1

>prot_M-pyrifera_M_contig74645.17659.1 ID=prot_M-pyrifera_M_contig74645.17659.1|Name=mRNA_M-pyrifera_M_contig74645.17659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MYLKCEKLRNKDLLSKTDAFIKVELRHGRAGRWELLGNTEVVYDNLNPVF
THQFKMDYHFEEQQTLRFTAYDYD
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mRNA from alignment at M-pyrifera_M_contig74645:721..954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74645.17659.1 ID=mRNA_M-pyrifera_M_contig74645.17659.1|Name=mRNA_M-pyrifera_M_contig74645.17659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig74645:721..954+ (Macrocystis pyrifera P11B4 male)
ACATGCATCGAGATGTATCTCAAGTGCGAGAAGTTGCGCAACAAGGATTT GTTGTCCAAGACGGATGCGTTCATCAAGGTGGAGCTGCGGCACGGGCGCG CAGGGCGATGGGAGCTGTTGGGCAACACTGAAGTTGTGTACGACAACCTC AACCCGGTGTTCACGCACCAGTTCAAGATGGACTACCACTTTGAAGAGCA ACAAACGCTTCGCTTCACCGCGTATGACTACGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74645:721..954+

>mRNA_M-pyrifera_M_contig74645.17659.1 ID=mRNA_M-pyrifera_M_contig74645.17659.1|Name=mRNA_M-pyrifera_M_contig74645.17659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig74645:721..954+ (Macrocystis pyrifera P11B4 male)
ATGTATCTCAAGTGCGAGAAGTTGCGCAACAAGGATTTGTTGTCCAAGAC
GGATGCGTTCATCAAGGTGGAGCTGCGGCACGGGCGCGCAGGGCGATGGG
AGCTGTTGGGCAACACTGAAGTTGTGTACGACAACCTCAACCCGGTGTTC
ACGCACCAGTTCAAGATGGACTACCACTTTGAAGAGCAACAAACGCTTCG
CTTCACCGCGTATGACTACGATATGTATCTCAAGTGCGAGAAGTTGCGCA
ACAAGGATTTGTTGTCCAAGACGGATGCGTTCATCAAGGTGGAGCTGCGG
CACGGGCGCGCAGGGCGATGGGAGCTGTTGGGCAACACTGAAGTTGTGTA
CGACAACCTCAACCCGGTGTTCACGCACCAGTTCAAGATGGACTACCACT
TTGAAGAGCAACAAACGCTTCGCTTCACCGCGTATGACTACGAT
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