mRNA_M-pyrifera_M_contig74645.17658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74645.17658.1
Unique NamemRNA_M-pyrifera_M_contig74645.17658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A2C9K2H3_BIOGL (60S ribosomal export protein NMD3 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K2H3_BIOGL)

HSP 1 Score: 125 bits (315), Expect = 1.670e-33
Identity = 66/115 (57.39%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CC CG  +  N  NMC  CL +DVDIT ++P    L  C  C R +     WI AE ES ELL VCLK LKGL  +KLVDA F+WTEPHS R+KVKLTVQKEVM G   QQ  IV
Sbjct:   19 CCRCGLQIEPNPTNMCVDCLRSDVDITEDIPKTSALSFCRSCERYLQPPNQWIKAELESRELLAVCLKKLKGLSKVKLVDAGFVWTEPHSMRVKVKLTVQKEVMNGALLQQVFIV 133
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A5J4Y8D7_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8D7_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 3.230e-33
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CCLCGT ++SN  NMC +C+ + VDIT  +  +V ++ C +CNR +   + W+ AE ES ELLT C+K +KGL+ +KLVDA FIWTEPHSRRLK KLTVQ EV  G   QQ+ +V
Sbjct:   32 CCLCGTSIMSNPSNMCVNCIRSQVDITAPIQKQVTVLWCKECNRYLQPPKNWVRAELESKELLTFCVKRIKGLQKVKLVDAGFIWTEPHSRRLKTKLTVQSEVFNGAILQQTFVV 146
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A7J7PH85_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PH85_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 4.320e-33
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CCLCGT+++ N  NMC +C+ + VDIT  +  +V ++ C +C R +   + W+ AEPES ELLT C K ++GL+ +KLVDA FIWTEPHS+RLKVK+T+Q EVM G   QQ  +V
Sbjct:   21 CCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQVTILWCKECGRYLQPPKHWVRAEPESKELLTFCTKRIRGLQKVKLVDAGFIWTEPHSKRLKVKVTIQDEVMNGTILQQGFVV 135
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A383VQ78_TETOB (60S ribosomal export protein NMD3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VQ78_TETOB)

HSP 1 Score: 130 bits (326), Expect = 4.640e-33
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CCLCGT+++ N  NMC +C+ + VDIT  +  +V ++ C +C R +   + W+ AEPES ELLT C K ++GL+ +KLVDA FIWTEPHS+RLKVKLT+Q EVM G   QQ  +V
Sbjct:   21 CCLCGTNIMPNPANMCVNCIRSQVDITEGIQKQVTILWCKECGRYLQPPKHWVRAEPESKELLTFCTKRIRGLQKVKLVDAGFIWTEPHSKRLKVKLTIQDEVMNGTILQQGFVV 135
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A8J4VC26_9ROSI (60S ribosomal export protein NMD3 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VC26_9ROSI)

HSP 1 Score: 120 bits (302), Expect = 9.480e-33
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CC CG  M  N  NMC  CL ++VDIT  L   V ++ C +CN  +   R WI A+ ES ELLT C+K LK L  ++LV A+FIWTEPHS+R+KVKL VQKEV+ G   +QS +V
Sbjct:   28 CCKCGIPMAPNAANMCVKCLRSEVDITEGLQKHVIIMHCPECNSYLQPPRTWIKAQLESKELLTFCVKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 142
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A7S0RDD9_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RDD9_9CHLO)

HSP 1 Score: 129 bits (323), Expect = 9.800e-33
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQS 336
            CCLCG  + +N  NMC +C+   VDIT  +  +V ++ C +CN+ +   +AW+ AE ES ELLT C+K LKGL  +KLVDA FIWTEPHS+RLKVKLT+QKEV  G   QQ+
Sbjct:   13 CCLCGVPVQANPANMCVNCIRGQVDITEGIQKEVTIMWCKECNKYLAPPKAWVRAELESKELLTFCIKKLKGLNKVKLVDAGFIWTEPHSKRLKVKLTIQKEVFHGTILQQT 124
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A250XK47_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XK47_9CHLO)

HSP 1 Score: 129 bits (323), Expect = 1.350e-32
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CCLCGT + SN  NMC +C+ + VDIT  +  +V ++ C +C R +   + W+ AEPES ELLT C+K +KGL  +KLVDA FIWTEPHS+RLKVKLT+Q EV  G   QQ+ +V
Sbjct:   26 CCLCGTSIQSNPSNMCVNCIRSQVDITEGIQKQVTVLWCKECGRYLQPPKHWVRAEPESKELLTFCIKKIKGLSKVKLVDAGFIWTEPHSKRLKVKLTIQAEVFNGAILQQTFLV 140
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: R7V0G8_CAPTE (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V0G8_CAPTE)

HSP 1 Score: 120 bits (300), Expect = 1.850e-32
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGL-KHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 345
            CC CGT +  N  NMC +CL A VDI+  +P +  L  C QC R +     W+ A  ES ELL VCLK +KG+ K ++LVDA FIWTEPHS+RLKVK+T+QKEVM G   QQ  IV
Sbjct:    4 CCQCGTQIEPNPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLKAALESRELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVFIV 119
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A0B7A4G4_9EUPU (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A4G4_9EUPU)

HSP 1 Score: 122 bits (306), Expect = 2.590e-32
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQ 333
            CC CG  +  N  NMC +CL +DVDIT ++P    L  C  C R +     W+ A  ES ELL+VCLK LKGL  +KL+DA F+WTEPHS R+KVKLTVQKEVM G   QQ
Sbjct:   20 CCRCGLQIEPNPTNMCVNCLRSDVDITEDIPKSSVLSFCRGCERYLQPPNQWVKATLESRELLSVCLKKLKGLAKVKLIDAGFVWTEPHSMRIKVKLTVQKEVMNGAVLQQ 130
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BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A1S3KGE3_LINUN (60S ribosomal export protein NMD3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KGE3_LINUN)

HSP 1 Score: 127 bits (319), Expect = 2.960e-32
Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:    1 CCLCGTDMISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQ 333
            CC CGT +  N  NMC +CL ADVDIT  +P +  +  C  C R +    AW+ A  ES ELLTVCLK LKGL  ++LVDA FIWTEPHS+R+KVKLT+QKEV+ G   QQ
Sbjct:   17 CCSCGTAIEPNPTNMCIACLRADVDITEGIPKQGTIYFCRNCERYLQPPSAWVAASLESRELLTVCLKKLKGLNKVRLVDAGFIWTEPHSKRIKVKLTIQKEVVNGAVLQQ 127
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9K2H3_BIOGL1.670e-3357.3960S ribosomal export protein NMD3 n=1 Tax=Biomphal... [more]
A0A5J4Y8D7_9CHLO3.230e-3354.7860S ribosomal export protein NMD3 n=1 Tax=Trebouxi... [more]
A0A7J7PH85_9CHLO4.320e-3352.1760S ribosomal export protein NMD3 n=1 Tax=Scenedes... [more]
A0A383VQ78_TETOB4.640e-3353.0460S ribosomal export protein NMD3 n=1 Tax=Tetrades... [more]
A0A8J4VC26_9ROSI9.480e-3352.1760S ribosomal export protein NMD3 n=1 Tax=Castanea... [more]
A0A7S0RDD9_9CHLO9.800e-3354.4660S ribosomal export protein NMD3 n=1 Tax=Pyramimo... [more]
A0A250XK47_9CHLO1.350e-3253.9160S ribosomal export protein NMD3 n=1 Tax=Chlamydo... [more]
R7V0G8_CAPTE1.850e-3254.3160S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A0B7A4G4_9EUPU2.590e-3254.9560S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A1S3KGE3_LINUN2.960e-3256.7660S ribosomal export protein NMD3 n=1 Tax=Lingula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74645contigM-pyrifera_M_contig74645:1..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score120.6
Seed ortholog evalue4.7e-25
Seed eggNOG ortholog160860.XP_007340670.1
Preferred nameNMD3
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042886,GO:0043021,GO:0043023,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:1990904
EggNOG free text desc.Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit
EggNOG OGs224TE@155619,38ESW@33154,3H0C2@355688,3NTWS@4751,3UY4U@5204,COG1499@1,KOG2613@2759
Ec32 ortholog descriptionNMD3
Ec32 orthologEc-13_001070.1
COG Functional cat.J
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size345
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.8595145-CDS-M-pyrifera_M_contig74645:0..3241622816644.8595145-CDS-M-pyrifera_M_contig74645:0..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74645 1..324 -
1692278095.7970195-CDS-M-pyrifera_M_contig74645:0..3241692278095.7970195-CDS-M-pyrifera_M_contig74645:0..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74645 1..324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.870643-UTR-M-pyrifera_M_contig74645:324..3451622816644.870643-UTR-M-pyrifera_M_contig74645:324..345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74645 325..345 -
1692278095.8078327-UTR-M-pyrifera_M_contig74645:324..3451692278095.8078327-UTR-M-pyrifera_M_contig74645:324..345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74645 325..345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74645.17658.1prot_M-pyrifera_M_contig74645.17658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74645 1..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74645.17658.1

>prot_M-pyrifera_M_contig74645.17658.1 ID=prot_M-pyrifera_M_contig74645.17658.1|Name=mRNA_M-pyrifera_M_contig74645.17658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEP
ESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGV
QFQQSKIV
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mRNA from alignment at M-pyrifera_M_contig74645:1..345-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74645.17658.1 ID=mRNA_M-pyrifera_M_contig74645.17658.1|Name=mRNA_M-pyrifera_M_contig74645.17658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig74645:1..345- (Macrocystis pyrifera P11B4 male)
TGTTGTCTTTGTGGGACAGATATGATCTCTAACCGCGTGAACATGTGCGC
GTCGTGTCTGGCGGCCGACGTCGACATCACCACGGAGCTGCCTGACAAGG
TGGAGCTGGTGGAGTGCAGCCAGTGCAATCGCGTGATGACGGGCAGCCGC
GCGTGGATCATCGCGGAGCCAGAGTCGACAGAGTTGCTCACAGTATGTCT
GAAGCTGCTCAAGGGCCTCAAGCACTTGAAGCTGGTCGACGCCAAGTTCA
TCTGGACCGAGCCGCACTCGCGTCGTCTGAAGGTGAAGCTGACTGTGCAG
AAGGAGGTGATGCGCGGCGTGCAGTTCCAGCAGTCCAAAATTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74645:1..345-

>mRNA_M-pyrifera_M_contig74645.17658.1 ID=mRNA_M-pyrifera_M_contig74645.17658.1|Name=mRNA_M-pyrifera_M_contig74645.17658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig74645:1..345- (Macrocystis pyrifera P11B4 male)
ATGATCTCTAACCGCGTGAACATGTGCGCGTCGTGTCTGGCGGCCGACGT
CGACATCACCACGGAGCTGCCTGACAAGGTGGAGCTGGTGGAGTGCAGCC
AGTGCAATCGCGTGATGACGGGCAGCCGCGCGTGGATCATCGCGGAGCCA
GAGTCGACAGAGTTGCTCACAGTATGTCTGAAGCTGCTCAAGGGCCTCAA
GCACTTGAAGCTGGTCGACGCCAAGTTCATCTGGACCGAGCCGCACTCGC
GTCGTCTGAAGGTGAAGCTGACTGTGCAGAAGGAGGTGATGCGCGGCGTG
CAGTTCCAGCAGTCCAAAATTGTCATGATCTCTAACCGCGTGAACATGTG
CGCGTCGTGTCTGGCGGCCGACGTCGACATCACCACGGAGCTGCCTGACA
AGGTGGAGCTGGTGGAGTGCAGCCAGTGCAATCGCGTGATGACGGGCAGC
CGCGCGTGGATCATCGCGGAGCCAGAGTCGACAGAGTTGCTCACAGTATG
TCTGAAGCTGCTCAAGGGCCTCAAGCACTTGAAGCTGGTCGACGCCAAGT
TCATCTGGACCGAGCCGCACTCGCGTCGTCTGAAGGTGAAGCTGACTGTG
CAGAAGGAGGTGATGCGCGGCGTGCAGTTCCAGCAGTCCAAAATTGTC
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