mRNA_M-pyrifera_M_contig74617.17656.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74617.17656.1
Unique NamemRNA_M-pyrifera_M_contig74617.17656.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74617.17656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74617contigM-pyrifera_M_contig74617:14..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.793867-CDS-M-pyrifera_M_contig74617:13..5111622816644.793867-CDS-M-pyrifera_M_contig74617:13..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74617 14..511 +
1692278095.7692785-CDS-M-pyrifera_M_contig74617:13..5111692278095.7692785-CDS-M-pyrifera_M_contig74617:13..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74617 14..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74617.17656.1prot_M-pyrifera_M_contig74617.17656.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74617 14..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74617.17656.1

>prot_M-pyrifera_M_contig74617.17656.1 ID=prot_M-pyrifera_M_contig74617.17656.1|Name=mRNA_M-pyrifera_M_contig74617.17656.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
VCRLLLEAGADVGARDNGGWTPLHAASRNGYGYVCRLLLEAGADVGARTK
KRSTPLSLAAWKGNSSTFNLLLNHGADISSTPQNGSTMLHCACKGGSLPI
VQKCIEAGLNHTKHTPHSSLPPPSFLNTTDSNHRTPLFLAVERGSAACVK
AMVEAGADVGVPGVEG
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mRNA from alignment at M-pyrifera_M_contig74617:14..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74617.17656.1 ID=mRNA_M-pyrifera_M_contig74617.17656.1|Name=mRNA_M-pyrifera_M_contig74617.17656.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig74617:14..511+ (Macrocystis pyrifera P11B4 male)
GTGTGTCGCTTGCTGCTTGAAGCAGGAGCAGATGTGGGAGCGAGGGACAA
TGGTGGCTGGACTCCACTTCATGCTGCATCACGGAATGGTTATGGATATG
TGTGTCGCTTGTTGCTTGAAGCAGGAGCAGATGTAGGAGCAAGAACGAAG
AAACGATCCACACCTCTCTCTCTTGCCGCCTGGAAAGGCAACTCCTCCAC
CTTCAACCTCCTCCTCAACCATGGAGCTGACATCTCCTCAACACCACAAA
ATGGCAGCACAATGCTACACTGTGCTTGCAAAGGTGGAAGTCTACCGATC
GTCCAGAAGTGCATCGAAGCAGGACTGAACCACACCAAACACACCCCCCA
CTCCTCCCTCCCTCCACCATCCTTCCTCAACACCACTGACTCCAACCACC
GCACACCTCTCTTCCTTGCTGTGGAGAGAGGGAGTGCTGCGTGTGTAAAG
GCGATGGTTGAGGCAGGTGCGGATGTTGGGGTGCCTGGGGTGGAAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74617:14..511+

>mRNA_M-pyrifera_M_contig74617.17656.1 ID=mRNA_M-pyrifera_M_contig74617.17656.1|Name=mRNA_M-pyrifera_M_contig74617.17656.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig74617:14..511+ (Macrocystis pyrifera P11B4 male)
GTGTGTCGCTTGCTGCTTGAAGCAGGAGCAGATGTGGGAGCGAGGGACAA
TGGTGGCTGGACTCCACTTCATGCTGCATCACGGAATGGTTATGGATATG
TGTGTCGCTTGTTGCTTGAAGCAGGAGCAGATGTAGGAGCAAGAACGAAG
AAACGATCCACACCTCTCTCTCTTGCCGCCTGGAAAGGCAACTCCTCCAC
CTTCAACCTCCTCCTCAACCATGGAGCTGACATCTCCTCAACACCACAAA
ATGGCAGCACAATGCTACACTGTGCTTGCAAAGGTGGAAGTCTACCGATC
GTCCAGAAGTGCATCGAAGCAGGACTGAACCACACCAAACACACCCCCCA
CTCCTCCCTCCCTCCACCATCCTTCCTCAACACCACTGACTCCAACCACC
GCACACCTCTCTTCCTTGCTGTGGAGAGAGGGAGTGCTGCGTGTGTAAAG
GCGATGGTTGAGGCAGGTGCGGATGTTGGGGTGCCTGGGGTGGAAGGGGT
GTGTCGCTTGCTGCTTGAAGCAGGAGCAGATGTGGGAGCGAGGGACAATG
GTGGCTGGACTCCACTTCATGCTGCATCACGGAATGGTTATGGATATGTG
TGTCGCTTGTTGCTTGAAGCAGGAGCAGATGTAGGAGCAAGAACGAAGAA
ACGATCCACACCTCTCTCTCTTGCCGCCTGGAAAGGCAACTCCTCCACCT
TCAACCTCCTCCTCAACCATGGAGCTGACATCTCCTCAACACCACAAAAT
GGCAGCACAATGCTACACTGTGCTTGCAAAGGTGGAAGTCTACCGATCGT
CCAGAAGTGCATCGAAGCAGGACTGAACCACACCAAACACACCCCCCACT
CCTCCCTCCCTCCACCATCCTTCCTCAACACCACTGACTCCAACCACCGC
ACACCTCTCTTCCTTGCTGTGGAGAGAGGGAGTGCTGCGTGTGTAAAGGC
GATGGTTGAGGCAGGTGCGGATGTTGGGGTGCCTGGGGTGGAAGGG
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