mRNA_M-pyrifera_M_contig746.17648.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig746.17648.1
Unique NamemRNA_M-pyrifera_M_contig746.17648.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig746.17648.1 vs. uniprot
Match: D7G417_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G417_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.650e-53
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 AVVGQPQSAEAAPLVAPPGAPTVGMWVEDRYCGLTTWVVSLVSGVVCAYFCPCDRRTVWISEGVKYNEKGATVDDYLFLNPCPRGSICN 267
            AV+GQPQSAEAAPLVAPPGAPTVGMWVE+RYCGLTTW+++LV G+ C+YFCPCDRRTVW+S GVKYNEKGA  DDYLFLNPCP GS C+
Sbjct:   18 AVIGQPQSAEAAPLVAPPGAPTVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGAVTDDYLFLNPCPPGSTCH 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig746.17648.1 vs. uniprot
Match: D8LMJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ4_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 7.160e-38
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 AVVGQP--QSAEAAPLVAPPGAPTVGMWVEDRYCGLTTWVVSLVSGVVCAYFCPCDRRTVWISEGVKYNEKGATVDDYLFLNP 243
            AV GQP  Q+AEAAP++A PGAPT GMWVE+RYCGLTTW++++V    C+YFCPCDRRTVW++ G KYNEKGA VDD LF+NP
Sbjct:   26 AVTGQPVPQAAEAAPVMAAPGAPTTGMWVEERYCGLTTWLITVVGSFPCSYFCPCDRRTVWVAGGKKYNEKGAIVDDQLFVNP 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig746.17648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G417_ECTSI5.650e-5382.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMJ4_ECTSI7.160e-3869.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig746contigM-pyrifera_M_contig746:1845..5390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_000450.1
Exons3
Model size279
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig746.17648.1prot_M-pyrifera_M_contig746.17648.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig746 1845..5390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.4519427-CDS-M-pyrifera_M_contig746:1844..18801622816644.4519427-CDS-M-pyrifera_M_contig746:1844..1880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 1845..1880 +
1692278095.6217484-CDS-M-pyrifera_M_contig746:1844..18801692278095.6217484-CDS-M-pyrifera_M_contig746:1844..1880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 1845..1880 +
1622816644.4666164-CDS-M-pyrifera_M_contig746:2931..30901622816644.4666164-CDS-M-pyrifera_M_contig746:2931..3090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 2932..3090 +
1692278095.632082-CDS-M-pyrifera_M_contig746:2931..30901692278095.632082-CDS-M-pyrifera_M_contig746:2931..3090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 2932..3090 +
1622816644.4792094-CDS-M-pyrifera_M_contig746:5306..53901622816644.4792094-CDS-M-pyrifera_M_contig746:5306..5390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 5307..5390 +
1692278095.6415832-CDS-M-pyrifera_M_contig746:5306..53901692278095.6415832-CDS-M-pyrifera_M_contig746:5306..5390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig746 5307..5390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig746.17648.1

>prot_M-pyrifera_M_contig746.17648.1 ID=prot_M-pyrifera_M_contig746.17648.1|Name=mRNA_M-pyrifera_M_contig746.17648.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
AVVGQPQSAEAAPLVAPPGAPTVGMWVEDRYCGLTTWVVSLVSGVVCAYF
CPCDRRTVWISEGVKYNEKGATVDDYLFLNPCPRGSICNNCH*
back to top

mRNA from alignment at M-pyrifera_M_contig746:1845..5390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig746.17648.1 ID=mRNA_M-pyrifera_M_contig746.17648.1|Name=mRNA_M-pyrifera_M_contig746.17648.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3546bp|location=Sequence derived from alignment at M-pyrifera_M_contig746:1845..5390+ (Macrocystis pyrifera P11B4 male)
GCGGTGGTTGGTCAGCCCCAATCTGCTGAGGCAGCGGTGAGACGCCGATC
TCACGTTCGTACTCGTAACCCCCTATGTGGTGATGTGCTATACTGCTGTA
CCTGGTATTCTATTTTGGGTAGGTTTAGGGACGGCCTTACTTGATGTGCC
CTGACGCCAATCACATACTCCGATATATGCTACTGTGCATATCGGATTTC
AATGCACAACGGGTGTAAAGAGAAAATCGAACGAGTCATGCTCTTCGTTG
ACGCGATCGTGTTCATCTGCGCGACCTTGTCGGTCGCTCCTCAAAACATC
ATTCGACGCGGCCCCCACGCCCGTGACTCTGTGAAATGCACTCGACTTCA
CATCCTACTGTCAGCCCTACCCCCGACCGCCTGATAAATTTCTCGGACTG
GACATGTATCTACTGGTTGGTAGTGTGGACTGCAATAGATAGACCCTTAT
AACGGAACCCTGTGCGTTCGGGATTGTAGGTCCCCCATACCAACACCCCT
GGAACCGGCCCCTTACGGTCAGCGGTGGGCAGACATGGTGGGCATCAATT
CGAGGTTCCTGATGTGGCATTTTCCCTTGTCGGGGGGTCCCTCGTAAGGG
GCTACGTACCTACTGCTCTATCAACCAATTATAGCCGAAGCTGGACCATC
GTAAACACTGCTGCGGACCCCATCAACTATTCTGGCTCGAGGTCGGTCCA
GCACCACGGTGCGCACAAGTGCCTAGGAGTGGGCACAGGCCACCACCACC
GATATCGGAGACCAGGAGGGATGCGGCGCAAACATGCCAACCACTACAGT
ACGTAGATCTCGAGACTTGACTGCAGCACGTCGATCTCGAGATAGGGTTA
GGGTATATATGCGTTGTTTACGTTATAACCGTGATTTCCCGCCATCGAAC
TGTTAGTAACTGCCACCATGATGTTGGATATTTCCTCAAACCTCGCTCGA
CGCAAATACTCTCTCTACTCTCCCTCTCTCAACCCCCTCCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCTCTCAACCCCCCCCCCCTCCCTCCCTCCCTCC
CTCTGTCCCTCTCTCCCTCCCTCCTCCGGACATGCAGCCTCTCGTGGCAC
CGCCCGGCGCGCCCACCGTGGGCATGTGGGTGGAGGACCGATACTGCGGT
CTGACAACGTGGGTGGTATCACTTGTCAGTGGCGTGGTGTGCGCCTACTT
CTGCCCCTGCGACCGCCGCACCGTCTGGATCAGCGAAGGGGTTAAGGTAA
GCCATGGAAAATGTTGCAGTGGGTGGTCGGTCTTTTTTTTTGGCAGGTTA
AGGCCTCCGCTGGCCTTTCACATGCTGTGTATAACGCATGATAGGATAAC
GCACGCCCTGGAACAAATTTCAGAGCCTAGTTTCTACTAAACTAGGGGTA
CACACAGTAAAACGAAAAGGGTGGGTTTGGAAAACTCTCGTCGAGATCTC
TTGATAGACTGTTGTATCGTTCGACGGTTACACTCTCCCCGTTGTCGAGA
AACTCATCTTCAAAGTTCGTCCGAGGGGGTGTGTTATATTATCACCCTGT
GTGATAACGGTGTGTTGTCCTATCACCCGGGTGTGATATGGTACTATGCT
TAGTGTAGGCGGTGTATTATGTTGTCACCCGGTGTGCTGTACGGTACTAG
GTTTGGTGTAGGGGGTGTGATAAGTTTATCACACGTGTGATACGGTACTA
CAGTAGGTTTAGTGTAGGGGTGCGGTCAGCCAGTATGGGGTAAACAAACC
AGCGGTCTCCTACGTAGCGTATTTTGTGGTGTGGGGTTTGGACTGACCGT
TTCGCCTTCTTAGGACTTCCGAGGGAAAAATTGGCGGTGAAAAGTGGCCA
TGAGTACAGCGACAGACACTGCGCGATTGCGGGGTAGTGGATGAAAGGAG
TCGTATGGCACAGGCGCGACATGATCCTCCTACCTTCATGCCCGTGGTGC
TGGGTCCTCATGCTGCTCTAATAGCTCCTATTTCGGGGGACCATATATAT
AGGACCTACGGTACACACAAAAACCTGTATAGTTACCTATTTTTACCAGC
AACATTTAGTCCTATTTGCTATGGCCCCCCGTAAAAGACCGGTGATAACA
CCAAAGTCGTTACGAAAGGGGCCCCGAAGGGATTGACCCCTGTTAGGAGT
GTTACTGTAGTACTGCGGTCCCAGTTTTGGGGACAAACTACTTGGAATTT
GAGTGGTTTGTTCCCGGAACGGGACTGCAGTACTAAGACTCCTATTGGAA
CTTCTCTTAAAAACCGGAATGGGTGATATATGCTGGTAACTAAGTTAGTG
TACATGCGTACATTTCTTAAGCCGGTACTCCTCTTTAAACGATAGCTCTT
AAAACCCTGATGTGCAAGCCGGGACCCGCGTTGCGGACGAGTCGTGTCGC
GGCTCAGGAAGTCGGAGCCCGCAGCCCGGACGGCGTGGGGTTGTGTTTTT
CGGGTGGGCTCCTACTGTAGAGCGCGTGCCGTCGAGTGGCGTTGGTGGTG
GCTGTGGTAGGGCATCGCGGAGCAAGGGTGTGCCTACTGCCACGACGTAG
CGCACCACGGGAATCGATGGAATCTCTAGCGGGCTATAACGCTTTTCCTT
TGGGCCTACACTTTTTGGTAGGGCGAGGCGCTTTCCCTTTGGGCCGACGT
TTTTTTTGTTTTGTTATTGTGACCAGCGTTTTCCTTTGGACCAATGTGCC
GAGCTCGGAATGGATGTCCAAAATGAACCAAACGCGATGGATGTGCGCGA
CGAGAAGACGAACAAAATTAAGTAGTGAGTGTGCTGAAAAGTTTCTCTTC
CCCTTTTGAGACTCAGAAGGAAATGGCGGTAGCATCCTATTGAGTATTTC
AGCTTCAGCCGCCCTCAGCAGCCCTAGCTGCTTGCTGGCTTAAGGGACGT
CGAGTTTAGCCTCCGATTGCAACTCCAGGAGGACACACGAGGAGCAGATA
GCGCTCGTACTGCCGCGCGCCAAACTCACGCTATTAGTAGGCGGCTGATT
AGACCGCAATTTCTCATTTTTGCGATCGCAATAGCTGTGGGTTCCAAAAA
GAGTTAGATGGAATTCCAACGGCGCATGCTCGCTTCACCGGAGTAGAGGG
CCGCCTCTGGTCGCTGCCCTTTTCGATGTCGCAACAGGATTTTCTCTGTC
CGCTCGATTACTTTCTCATTGATTGTACACACCAGGTTATGATGATTGTT
ACTACATTTTCCCTCAGACTGTGTCCAGCTCGAATCTTGATCGCTCATAC
GGGTAGCCGGTGGGAAGGAAAGGCTGCAGAGAAACTCCAATGAGGAAGCT
GAGTTTCGCTTTCAAGTACATGGTTTAGTTCGGCTTTCTCTACCTGCCGC
CGCCCATCTAACACACTACCCATAATTGTATTGTGAGTATGCCCTTACAT
TGGGATTTCCCTGTTCCGCAAATCCGCTTTTTCTCTTCCCCGTTCCCTTC
AATCCCTCTCAGTACAACGAGAAAGGAGCTACGGTGGATGATTACCTGTT
CCTCAACCCCTGCCCCAGGGGCAGCATCTGCAACAACTGCCACTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig746:1845..5390+

>mRNA_M-pyrifera_M_contig746.17648.1 ID=mRNA_M-pyrifera_M_contig746.17648.1|Name=mRNA_M-pyrifera_M_contig746.17648.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig746:1845..5390+ (Macrocystis pyrifera P11B4 male)
GCGGTGGTTGGTCAGCCCCAATCTGCTGAGGCAGCGGCGGTGGTTGGTCA
GCCCCAATCTGCTGAGGCAGCGCCTCTCGTGGCACCGCCCGGCGCGCCCA
CCGTGGGCATGTGGGTGGAGGACCGATACTGCGGTCTGACAACGTGGGTG
GTATCACTTGTCAGTGGCGTGGTGTGCGCCTACTTCTGCCCCTGCGACCG
CCGCACCGTCTGGATCAGCGAAGGGGTTAAGCCTCTCGTGGCACCGCCCG
GCGCGCCCACCGTGGGCATGTGGGTGGAGGACCGATACTGCGGTCTGACA
ACGTGGGTGGTATCACTTGTCAGTGGCGTGGTGTGCGCCTACTTCTGCCC
CTGCGACCGCCGCACCGTCTGGATCAGCGAAGGGGTTAAGTACAACGAGA
AAGGAGCTACGGTGGATGATTACCTGTTCCTCAACCCCTGCCCCAGGGGC
AGCATCTGCAACAACTGCCACTAATACAACGAGAAAGGAGCTACGGTGGA
TGATTACCTGTTCCTCAACCCCTGCCCCAGGGGCAGCATCTGCAACAACT
GCCACTAA
back to top