mRNA_M-pyrifera_M_contig74572.17646.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74572.17646.1
Unique NamemRNA_M-pyrifera_M_contig74572.17646.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A8H7T0I8_9FUNG (PDZ domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7T0I8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.800e-7
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLR 207
            FA+V+ V PD PAY+AG+RR D+I KFG L  +    L  L   + ++EN  +PV +LR
Sbjct:  128 FAIVNAVAPDSPAYSAGLRRNDRIIKFGHLDHSNHQRLQALNGFIGQSENQQVPVTILR 186
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A0D7A5H6_9AGAR (Uncharacterized protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7A5H6_9AGAR)

HSP 1 Score: 54.3 bits (129), Expect = 3.690e-7
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   13 SEEVGVFALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTT--PFSLSDLASMVRENENSTIPVQVLR 207
            +EE+  FA V+GV P  PA  AG++R D I KFG LT  +    SL  LAS+V +NEN  I V+VLR
Sbjct:   91 AEELSPFARVNGVAPGSPAAEAGLQREDVIVKFGPLTKRSFGSESLQPLASLVSQNENRQIVVEVLR 157
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A8H7RIH8_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RIH8_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 4.770e-7
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLR 207
            FA+V+ V PD PAY+AG+RR D+I KFG +      +L  L +++ ++EN  +PV +LR
Sbjct:  126 FAIVNAVAPDSPAYSAGLRRNDRICKFGHIDEKNHQNLLALNALIGQSENIPVPVSLLR 184
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: UPI000867C3FB (uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867C3FB)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-6
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLRS 210
            FALV+ V P+ PA +AG++RGD+I +FG++ +     L+ LA +V+ NE  +IP++V R+
Sbjct:  132 FALVNSVAPNSPAESAGLQRGDRIKRFGTVHAGNHAKLTKLAEVVQANEGRSIPLRVSRA 191
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A0E9NGL5_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NGL5_SAICN)

HSP 1 Score: 53.1 bits (126), Expect = 2.150e-6
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLRS 210
            FALV+ V P+ PA +AG++RGD+I +FG++ +     L+ LA +V+ NE  +IP++V R+
Sbjct:  132 FALVNSVAPNSPAESAGLQRGDRIKRFGTVHAGNHAKLTKLAEVVQANEGRSIPLRVSRA 191
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A1E3Q923_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q923_LIPST)

HSP 1 Score: 50.8 bits (120), Expect = 6.100e-6
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLR 207
            FA+V+ V    PA+ AG+ +GDKI KFGS+ +     L+ LA++V+ENENS I + V+R
Sbjct:   79 FAVVNTVVQRSPAHEAGLIKGDKIVKFGSVHAGNHQKLARLATVVQENENSPIEITVIR 137
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BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Match: A0A7R9TK10_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TK10_9VIRI)

HSP 1 Score: 50.4 bits (119), Expect = 1.520e-5
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   31 FALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSDLASMVRENENSTIPVQVLRS 210
             A+V  V P GPA  AG++RGD+I +FG+++ +    L++LAS  R NE   + V+VLR+
Sbjct:  147 IAVVGDVAPGGPADEAGMKRGDRITRFGAISGSGGGGLAELASEARLNEGGAVGVRVLRT 206
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74572.17646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8H7T0I8_9FUNG1.800e-745.76PDZ domain-containing protein n=1 Tax=Thamnidium e... [more]
A0A0D7A5H6_9AGAR3.690e-750.75Uncharacterized protein n=1 Tax=Fistulina hepatica... [more]
A0A8H7RIH8_9FUNG4.770e-744.07Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
UPI000867C3FB1.400e-643.33uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A0E9NGL5_SAICN2.150e-643.33Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A1E3Q923_LIPST6.100e-647.46Uncharacterized protein n=1 Tax=Lipomyces starkeyi... [more]
A0A7R9TK10_9VIRI1.520e-543.33Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74572contigM-pyrifera_M_contig74572:184..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.3506334-CDS-M-pyrifera_M_contig74572:183..4021622816644.3506334-CDS-M-pyrifera_M_contig74572:183..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74572 184..402 +
1692278095.554735-CDS-M-pyrifera_M_contig74572:183..4021692278095.554735-CDS-M-pyrifera_M_contig74572:183..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74572 184..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74572.17646.1prot_M-pyrifera_M_contig74572.17646.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74572 184..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74572.17646.1

>prot_M-pyrifera_M_contig74572.17646.1 ID=prot_M-pyrifera_M_contig74572.17646.1|Name=mRNA_M-pyrifera_M_contig74572.17646.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
DGDGSEEVGVFALVDGVDPDGPAYAAGVRRGDKIHKFGSLTSTTPFSLSD
LASMVRENENSTIPVQVLRSPPT
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mRNA from alignment at M-pyrifera_M_contig74572:184..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74572.17646.1 ID=mRNA_M-pyrifera_M_contig74572.17646.1|Name=mRNA_M-pyrifera_M_contig74572.17646.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig74572:184..402+ (Macrocystis pyrifera P11B4 male)
GATGGGGATGGAAGTGAGGAAGTTGGAGTGTTTGCATTGGTAGATGGTGT
TGATCCTGACGGCCCAGCCTATGCTGCTGGAGTTCGAAGAGGAGATAAGA
TTCACAAGTTTGGATCTCTTACTTCCACCACCCCTTTCTCCCTCTCTGAC
CTCGCTTCTATGGTGAGAGAAAACGAAAATAGCACCATTCCAGTTCAAGT
CCTCAGATCTCCTCCTACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74572:184..402+

>mRNA_M-pyrifera_M_contig74572.17646.1 ID=mRNA_M-pyrifera_M_contig74572.17646.1|Name=mRNA_M-pyrifera_M_contig74572.17646.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig74572:184..402+ (Macrocystis pyrifera P11B4 male)
GATGGGGATGGAAGTGAGGAAGTTGGAGTGTTTGCATTGGTAGATGGTGT
TGATCCTGACGGCCCAGCCTATGCTGCTGGAGTTCGAAGAGGAGATAAGA
TTCACAAGTTTGGATCTCTTACTTCCACCACCCCTTTCTCCCTCTCTGAC
CTCGCTTCTATGGTGAGAGAAAACGAAAATAGCACCATTCCAGTTCAAGT
CCTCAGATCTCCTCCTACCGATGGGGATGGAAGTGAGGAAGTTGGAGTGT
TTGCATTGGTAGATGGTGTTGATCCTGACGGCCCAGCCTATGCTGCTGGA
GTTCGAAGAGGAGATAAGATTCACAAGTTTGGATCTCTTACTTCCACCAC
CCCTTTCTCCCTCTCTGACCTCGCTTCTATGGTGAGAGAAAACGAAAATA
GCACCATTCCAGTTCAAGTCCTCAGATCTCCTCCTACC
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