mRNA_M-pyrifera_M_contig74571.17645.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74571.17645.1
Unique NamemRNA_M-pyrifera_M_contig74571.17645.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A7C2BBK5_9BACT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2BBK5_9BACT)

HSP 1 Score: 181 bits (458), Expect = 7.630e-57
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            KTVEVDP   PF R G+PGS+LDI+    I+IDHACGGVCACSTCHVIVR+GFDT+ EA+E+EEDQLD APGL+PTSRLACQAVPDGT D+VVEIP WNRNH  EEH
Sbjct:   22 KTVEVDPADVPFQRDGKPGSLLDIALGADIDIDHACGGVCACSTCHVIVREGFDTLPEATEEEEDQLDEAPGLEPTSRLACQAVPDGTVDLVVEIPSWNRNHAREEH 128          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A3M1ECM7_9BACT (Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1ECM7_9BACT)

HSP 1 Score: 174 bits (440), Expect = 5.110e-54
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1
Query:   10 TVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            TVEVDP + P+  +G PGSILDI+  HGIEIDHACGGVCACSTCHV+V++G++T+ EA+E+EEDQLD AP LKPTSRLACQ+VPDGT DVVVEIP WNRN V E H
Sbjct:   30 TVEVDPEKFPYDHNGLPGSILDIALGHGIEIDHACGGVCACSTCHVVVKQGYETLNEATEEEEDQLDEAPDLKPTSRLACQSVPDGTQDVVVEIPSWNRNLVQEGH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A518EY52_9BACT (2Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EY52_9BACT)

HSP 1 Score: 173 bits (438), Expect = 1.030e-53
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            K V VDP   P  R G+PGSILDI++ +GIEIDHACGGVCACSTCHVIVR+GFD+I EA+EDEED LD APGL+ +SRLACQAVPDG++D+VVEIP WNRNH  E H
Sbjct:   29 KKVTVDPAALPLSREGKPGSILDIADGNGIEIDHACGGVCACSTCHVIVREGFDSIPEATEDEEDMLDEAPGLELSSRLACQAVPDGSTDLVVEIPAWNRNHAQESH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A518CYC6_9BACT (2Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CYC6_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.460e-53
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 1
Query:   13 VEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            VEVDP + P+ R G PGS+L+I+  H +EIDHACGGVCACSTCHVIVR+G +T  EAS+DEEDQLDLAPG+ P SRLACQ VPDGT ++VVEIP WNRNHVSEEH
Sbjct:   31 VEVDPAKLPYTRDGLPGSLLEIALGHDLEIDHACGGVCACSTCHVIVREGVETCNEASDDEEDQLDLAPGITPNSRLACQCVPDGTRNLVVEIPAWNRNHVSEEH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A7V2CJ47_9BACT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V2CJ47_9BACT)

HSP 1 Score: 171 bits (433), Expect = 5.950e-53
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            K VEVDP + P+G HG PGSILDI+ AHG+ IDHACGGVCACSTCHV+VR+G DT+ EA+EDEEDQLD APGL P SRL+CQ+VPDG+ D+VVEIP WNRN ++ EH
Sbjct:   29 KVVEVDPEKVPYGDHGLPGSILDIALAHGVAIDHACGGVCACSTCHVVVRQGLDTLNEATEDEEDQLDNAPGLTPCSRLSCQSVPDGSRDLVVEIPDWNRN-LAREH 134          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A523PDU3_9BACT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PDU3_9BACT)

HSP 1 Score: 167 bits (423), Expect = 2.400e-51
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1
Query:    4 EKTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            E  V V+P   P+ R GE GSIL+I+  H  +IDHACGGVCACSTCHVIVR+G ++  EA+EDEEDQLDLAPGL P SRLACQ VPDGT D+VVEIP+WNRNHVSE H
Sbjct:   28 EDRVVVEPAALPYSRDGEVGSILEIALGHDFDIDHACGGVCACSTCHVIVREGLESCREATEDEEDQLDLAPGLTPNSRLACQVVPDGTRDLVVEIPEWNRNHVSEGH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A2D6HK99_9BACT (Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HK99_9BACT)

HSP 1 Score: 165 bits (418), Expect = 1.180e-50
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            + VEVDP + P+ R G+PGS+L+I  AH +EIDHACGGVCACSTCHVIV  G ++   ASEDEED LD APG+ PTSRLACQAVPDG+SDVVV IP WNRN V E H
Sbjct:   29 EAVEVDPARLPYSREGQPGSVLEIGLAHDVEIDHACGGVCACSTCHVIVESGGESFNPASEDEEDMLDNAPGVSPTSRLACQAVPDGSSDVVVSIPDWNRNAVKEPH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A518BHW6_9BACT (2Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BHW6_9BACT)

HSP 1 Score: 164 bits (416), Expect = 2.380e-50
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEEH 327
            K VEVDP++ P+ R G PGS+L+I+  +G++IDHACGGVCACSTCHVI+R+G ++  EAS+DEEDQLD APGL   SRLACQ VPDG+ DVVVEIP WNRN VSE+H
Sbjct:   29 KVVEVDPSKLPYSRDGLPGSVLEIAGGNGVDIDHACGGVCACSTCHVIIREGLESCNEASDDEEDQLDHAPGLTTESRLACQTVPDGSCDVVVEIPGWNRNLVSEDH 135          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A2D5AYZ9_9BACT (Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AYZ9_9BACT)

HSP 1 Score: 163 bits (413), Expect = 6.830e-50
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    4 EKTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSEE 324
            E  ++VDP   P GR G+ GSILDI+  H +EI+HACGGVCACSTCHVIVR+G ++  EASEDEED LD APGL+P SRL+CQ VPDGT D+VVEIP WNRN VSEE
Sbjct:   28 EMRIQVDPQDLPLGRDGKAGSILDIALGHDLEIEHACGGVCACSTCHVIVREGIESCNEASEDEEDMLDNAPGLEPNSRLSCQCVPDGTRDIVVEIPDWNRNLVSEE 134          
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Match: A0A7C7YSS8_9BACT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YSS8_9BACT)

HSP 1 Score: 160 bits (406), Expect = 5.450e-49
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    7 KTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVIVRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKWNRNHVSE 321
            + V+VDP + PFGR G+PGSILDI+  H ++IDHACGGVCACSTCHVIVR+G +    A E EED LD APGL P SRLACQ VPDG+ D+VVEIP WNRN+  E
Sbjct:   18 RAVQVDPAELPFGRDGKPGSILDIALGHAVDIDHACGGVCACSTCHVIVREGLEACSVADESEEDMLDNAPGLTPESRLACQTVPDGSRDIVVEIPNWNRNYAKE 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74571.17645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2BBK5_9BACT7.630e-5776.642Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A3M1ECM7_9BACT5.110e-5473.58Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=... [more]
A0A518EY52_9BACT1.030e-5372.902Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium... [more]
A0A518CYC6_9BACT1.460e-5373.332Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium... [more]
A0A7V2CJ47_9BACT5.950e-5371.962Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A523PDU3_9BACT2.400e-5170.372Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A2D6HK99_9BACT1.180e-5069.16Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=... [more]
A0A518BHW6_9BACT2.380e-5068.222Fe-2S ferredoxin n=1 Tax=Planctomycetes bacterium... [more]
A0A2D5AYZ9_9BACT6.830e-5069.16Ferredoxin n=1 Tax=Planctomycetes bacterium TaxID=... [more]
A0A7C7YSS8_9BACT5.450e-4966.672Fe-2S iron-sulfur cluster binding domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74571contigM-pyrifera_M_contig74571:731..1060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.3
Seed ortholog evalue6.8e-32
Seed eggNOG ortholog1123508.JH636442_gene3885
Preferred namefdx
KEGG koko:K04755
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0022900,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0071840
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2J33M@203682,COG0633@1,COG0633@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.318198-CDS-M-pyrifera_M_contig74571:730..10601622816644.318198-CDS-M-pyrifera_M_contig74571:730..1060Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74571 731..1060 -
1692278095.5417194-CDS-M-pyrifera_M_contig74571:730..10601692278095.5417194-CDS-M-pyrifera_M_contig74571:730..1060Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74571 731..1060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74571.17645.1prot_M-pyrifera_M_contig74571.17645.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74571 731..1060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74571.17645.1

>prot_M-pyrifera_M_contig74571.17645.1 ID=prot_M-pyrifera_M_contig74571.17645.1|Name=mRNA_M-pyrifera_M_contig74571.17645.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
NEKTVEVDPTQAPFGRHGEPGSILDISEAHGIEIDHACGGVCACSTCHVI
VRKGFDTIEEASEDEEDQLDLAPGLKPTSRLACQAVPDGTSDVVVEIPKW
NRNHVSEEH*
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mRNA from alignment at M-pyrifera_M_contig74571:731..1060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74571.17645.1 ID=mRNA_M-pyrifera_M_contig74571.17645.1|Name=mRNA_M-pyrifera_M_contig74571.17645.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig74571:731..1060- (Macrocystis pyrifera P11B4 male)
AACGAGAAGACCGTCGAGGTCGACCCGACCCAAGCGCCCTTCGGCCGCCA CGGCGAGCCGGGCTCGATCCTGGACATCTCCGAGGCCCACGGCATCGAGA TCGACCACGCCTGCGGCGGCGTCTGCGCCTGCTCGACGTGCCACGTGATC GTCCGCAAGGGCTTCGACACGATCGAGGAGGCCTCCGAGGACGAGGAGGA CCAGCTCGACCTCGCGCCCGGCCTCAAGCCGACCTCGCGACTCGCCTGCC AGGCGGTCCCCGACGGCACGAGCGACGTCGTCGTCGAGATCCCCAAGTGG AACCGCAACCACGTCTCGGAAGAGCACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74571:731..1060-

>mRNA_M-pyrifera_M_contig74571.17645.1 ID=mRNA_M-pyrifera_M_contig74571.17645.1|Name=mRNA_M-pyrifera_M_contig74571.17645.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig74571:731..1060- (Macrocystis pyrifera P11B4 male)
AACGAGAAGACCGTCGAGGTCGACCCGACCCAAGCGCCCTTCGGCCGCCA
CGGCGAGCCGGGCTCGATCCTGGACATCTCCGAGGCCCACGGCATCGAGA
TCGACCACGCCTGCGGCGGCGTCTGCGCCTGCTCGACGTGCCACGTGATC
GTCCGCAAGGGCTTCGACACGATCGAGGAGGCCTCCGAGGACGAGGAGGA
CCAGCTCGACCTCGCGCCCGGCCTCAAGCCGACCTCGCGACTCGCCTGCC
AGGCGGTCCCCGACGGCACGAGCGACGTCGTCGTCGAGATCCCCAAGTGG
AACCGCAACCACGTCTCGGAAGAGCACTGAAACGAGAAGACCGTCGAGGT
CGACCCGACCCAAGCGCCCTTCGGCCGCCACGGCGAGCCGGGCTCGATCC
TGGACATCTCCGAGGCCCACGGCATCGAGATCGACCACGCCTGCGGCGGC
GTCTGCGCCTGCTCGACGTGCCACGTGATCGTCCGCAAGGGCTTCGACAC
GATCGAGGAGGCCTCCGAGGACGAGGAGGACCAGCTCGACCTCGCGCCCG
GCCTCAAGCCGACCTCGCGACTCGCCTGCCAGGCGGTCCCCGACGGCACG
AGCGACGTCGTCGTCGAGATCCCCAAGTGGAACCGCAACCACGTCTCGGA
AGAGCACTGA
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