mRNA_M-pyrifera_M_contig74533.17641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74533.17641.1
Unique NamemRNA_M-pyrifera_M_contig74533.17641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: A0A5A8DMA8_CAFRO (Beta-N-acetylhexosaminidase n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DMA8_CAFRO)

HSP 1 Score: 286 bits (732), Expect = 7.380e-89
Identity = 146/279 (52.33%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVRSLPSLFLQHALVSCRVARSLSLTPLLWHDMLGEAGERELWELGRVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVPVWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATPLRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGL-SSLPL 834
            AY+ EEV R +      GL V+PLVQTFGHLEFVLKH  F + RE+ +++MDLCPE+  A  LA EL+ Q  ALHP   R+H+GCDEVFSLG+H  SRA +       LFL HA         L + PLLWHDM+       L ++ +  AEVVVWSYG +V   V   ++ +   AG+ VWGASA++GAS PDA+  P ARHV NH+SW+  A  T L+G+ILTGWARFNHTAALCE+LP+GLP LALC+   RNG       + V ++LGL  SLPL
Sbjct:   62 AYTKEEVGRVLAAAKRSGLSVIPLVQTFGHLEFVLKHARFGSMREERDNYMDLCPESDGARALAFELVHQVAALHPGCPRLHIGCDEVFSLGTHALSRAKAASAGEARLFLDHAGAVMNECARLGIVPLLWHDMMARFDVDALRQVAKSRAEVVVWSYGLDVEDAVPAGMWSRFREAGLRVWGASAFKGASQPDAVWVPAARHVTNHQSWVARASQTSLQGVILTGWARFNHTAALCETLPAGLPSLALCMGVLRNGGYSDGLRRRVWAALGLPESLPL 340          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: A0A5A8C0Y1_CAFRO (Beta-N-acetylhexosaminidase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C0Y1_CAFRO)

HSP 1 Score: 286 bits (732), Expect = 2.540e-87
Identity = 146/279 (52.33%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVRSLPSLFLQHALVSCRVARSLSLTPLLWHDMLGEAGERELWELGRVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVPVWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATPLRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGL-SSLPL 834
            AY+ EEV R +      GL V+PLVQTFGHLEFVLKH  F + RE+ +++MDLCPE+  A  LA EL+ Q  ALHP   R+H+GCDEVFSLG+H  SRA +       LFL HA         L + PLLWHDM+       L ++ +  AEVVVWSYG +V   V   ++ +   AG+ VWGASA++GAS PDA+  P ARHV NH+SW+  A  T L+G+ILTGWARFNHTAALCE+LP+GLP LALC+   RNG       + V ++LGL  SLPL
Sbjct:   62 AYTKEEVGRVLAAAKRSGLSVIPLVQTFGHLEFVLKHARFGSMREERDNYMDLCPESDGARALAFELVHQVAALHPGCPRLHIGCDEVFSLGTHALSRAKAASAGEARLFLDHAGAVMNECARLGIVPLLWHDMMAHFDVDALRQVAKSRAEVVVWSYGLDVEDAVPAGMWSRFREAGLRVWGASAFKGASQPDAVWVPAARHVTNHQSWVARASQTSLQGVILTGWARFNHTAALCETLPAGLPSLALCMGVLRNGGYSDGLRRRVWAALGLPESLPL 340          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: HEXD_HUMAN (Hexosaminidase D n=8 Tax=Simiiformes TaxID=314293 RepID=HEXD_HUMAN)

HSP 1 Score: 194 bits (492), Expect = 5.160e-55
Identity = 119/285 (41.75%), Postives = 159/285 (55.79%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            AYS  E++  + L G   LEV+PLVQTFGH+EFVLKH +FA  RE       L P   ++  L   +I Q + LHP + R+H+GCDEV+ LG    SR   Q    S   L L H  A+ S   AR  S+TPL+W DML +  E +L   G     E V+W Y  ++     + L  K    G P +W ASA++GA+ P     P+  H+ NH  WLQVA + P   L+G+ILTGW R++H + LCE LP+G+P LA CL     G  D+     V + LG+SSL
Sbjct:   63 AYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTDSLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGISSL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: UPI001E267F60 (hexosaminidase D isoform X6 n=1 Tax=Lemur catta TaxID=9447 RepID=UPI001E267F60)

HSP 1 Score: 192 bits (488), Expect = 5.420e-55
Identity = 118/285 (41.40%), Postives = 158/285 (55.44%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            +YS  EV+  + L G   LEVVPLVQTFGH+EFVLKHG+FA  RE       L P  P++  L   +I Q +  HP + R+H+GCDEV+ LG    SR   Q    S   L L H  A+ S  +AR   +TPL W DML +  E +L   G     E V+W Y  ++     + L  K    G   +W ASA++GA+ P    TP+  H+ NHE WLQVA   P   L+G++LTGW R +H + LCE LP G+P LA CL +  +G   +   + V + LG+S L
Sbjct:   63 SYSPAEVKEILHLAGLHQLEVVPLVQTFGHMEFVLKHGAFAHLREVAAFPNTLNPHEPESLALVGAMIDQVLQQHPGARRLHIGCDEVYYLGEGEASRQWLQQEQNSKAKLCLSHVRAVASHVLARHPHVTPLAWDDMLRDMPEDQLTASGVPQLVEPVLWDYAADLDVHGKVLLMQKYRQCGFRRLWAASAFKGATGPSQALTPVEHHLRNHERWLQVAAGGPVGSLQGIVLTGWQRHDHFSVLCELLPVGVPSLAACLQSLLHGGFTEAVKRRVENILGVSGL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: A0A2K5RX74_CEBIM (Beta-N-acetylhexosaminidase n=1 Tax=Cebus imitator TaxID=2715852 RepID=A0A2K5RX74_CEBIM)

HSP 1 Score: 191 bits (486), Expect = 1.850e-54
Identity = 118/287 (41.11%), Postives = 160/287 (55.75%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAG-VPVWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSLPL 834
            AYS  E++  + L G   LEV+PLVQTFGH+EFVLKH +FA  RE       L P   ++  L   +I Q + LHP + R+HVGCDEV+ LG    SR   Q    S   L L H  A+ S   AR   +TPL+W DML E  E +L   G     E V+W Y  ++     + L  K +  G + +W ASA++GA+ P     P+  H+ NH  WLQVA + P   L+G+ILTGW R++H + LCE LP+G+P LA CL     G  D+     + + LG+SSL +
Sbjct:   63 AYSPAEIKEILHLAGLSELEVIPLVQTFGHMEFVLKHAAFAHLREVGPLPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHVGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMQAVASHVRARRPGVTPLVWDDMLRELPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYQRCGFLRLWAASAFKGATGPSQALPPVEHHLRNHAQWLQVAGSGPTDALQGIILTGWQRYDHFSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKMENLLGISSLEI 349          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: UPI0007DC6800 (hexosaminidase D isoform X1 n=3 Tax=Homininae TaxID=207598 RepID=UPI0007DC6800)

HSP 1 Score: 194 bits (492), Expect = 2.810e-54
Identity = 119/285 (41.75%), Postives = 159/285 (55.79%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            AYS  E++  + L G   LEV+PLVQTFGH+EFVLKH +FA  RE       L P   ++  L   +I Q + LHP + R+H+GCDEV+ LG    SR   Q    S   L L H  A+ S   AR  S+TPL+W DML +  E +L   G     E V+W Y  ++     + L  K    G P +W ASA++GA+ P     P+  H+ NH  WLQVA + P   L+G+ILTGW R++H + LCE LP+G+P LA CL     G  D+     V + LG+SSL
Sbjct:   63 AYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTDSLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGISSL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: Q8WVB3-2 (Isoform 2 of Hexosaminidase D n=15 Tax=Hominidae TaxID=9604 RepID=Q8WVB3-2)

HSP 1 Score: 194 bits (492), Expect = 3.400e-54
Identity = 119/285 (41.75%), Postives = 159/285 (55.79%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            AYS  E++  + L G   LEV+PLVQTFGH+EFVLKH +FA  RE       L P   ++  L   +I Q + LHP + R+H+GCDEV+ LG    SR   Q    S   L L H  A+ S   AR  S+TPL+W DML +  E +L   G     E V+W Y  ++     + L  K    G P +W ASA++GA+ P     P+  H+ NH  WLQVA + P   L+G+ILTGW R++H + LCE LP+G+P LA CL     G  D+     V + LG+SSL
Sbjct:   63 AYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTDSLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGISSL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: UPI0018A08BB9 (hexosaminidase D isoform X1 n=3 Tax=Choloepus didactylus TaxID=27675 RepID=UPI0018A08BB9)

HSP 1 Score: 191 bits (485), Expect = 5.420e-54
Identity = 119/285 (41.75%), Postives = 157/285 (55.09%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            AYS  E++  + L     LEVVPLVQTFGH+EFVLKHG+FA  RE       L P   ++  L   ++ Q + LH  +  +H+GCDEV+ LG    S+   Q    S   L L H  A+VS  +AR  +  PLLW DML +  E  L   G     E V+W YG E+       L  K    G P +W ASA++GA+  +   TP+  H+ NHE WLQ A+A P   LRG++LTGW R++H A LCE LP G+P LA+CL +  +G       + V   LGL SL
Sbjct:   63 AYSPSEIQEILHLARLNELEVVPLVQTFGHMEFVLKHGAFAHLREVASFPNTLNPHEAESLALVGAMLGQVLELHRDARWLHIGCDEVYYLGEGEASQRWLQQEQGSKAQLCLSHVKAVVSHLLARHPATRPLLWDDMLRDIPEDGLAGSGVPPLVEPVLWDYGAELDVPGKALLMEKYRRCGFPGLWAASAFKGATGANQALTPVDHHLRNHEQWLQAARAAPPGALRGIVLTGWQRYDHFAVLCELLPVGIPSLAVCLQSLLHGGFSPEAKERVQRVLGLPSL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: A0A8C8YLW3_PROSS (Beta-N-acetylhexosaminidase n=2 Tax=Lemuridae TaxID=9445 RepID=A0A8C8YLW3_PROSS)

HSP 1 Score: 191 bits (484), Expect = 7.760e-54
Identity = 116/285 (40.70%), Postives = 157/285 (55.09%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRA--VSQVRSLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            +YS  EV+  + L G   LEVVPLVQTFGH+EFVLKH +FA  RE       L P  P++  L   +I Q +  HP + R+H+GCDEV+ LG    SR     +  S   L L H  A+ S  +AR   +TPL W DML +  E +L   G     E V+W Y  ++     + L  K    G   +W ASA++GA+ P    TP+  H+ NHE WLQVA   P   L+G++LTGW R +H + LCE LP G+P LA CL +  +G   +   + V + LG+S L
Sbjct:   63 SYSPAEVKEILHLAGLHQLEVVPLVQTFGHMEFVLKHAAFAHLREVAAFPNTLNPHEPESLALVGAMIDQVLQQHPGARRLHIGCDEVYYLGEGEASRQWLEQEQNSKAKLCLSHMRAVASHVLARHPHVTPLAWDDMLRDMSEDQLTASGVPQLVEPVLWDYAADLDVHGKVLLMQKYRQCGFRRLWAASAFKGATGPSQALTPVEHHLRNHERWLQVAAGGPVGSLQGIVLTGWQRHDHFSVLCELLPVGVPSLAACLQSLLHGGFTEAVKRRVENILGVSGL 347          
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Match: UPI001E26C9E1 (hexosaminidase D isoform X1 n=3 Tax=Lemur catta TaxID=9447 RepID=UPI001E26C9E1)

HSP 1 Score: 192 bits (488), Expect = 1.450e-53
Identity = 118/285 (41.40%), Postives = 158/285 (55.44%), Query Frame = 1
Query:    1 AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESFMDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAVSQVR--SLPSLFLQH--ALVSCRVARSLSLTPLLWHDMLGEAGERELWELG-RVAAEVVVWSYGTEVGAGVDMALFGKLEAAGVP-VWGASAWRGASAPDAIHTPIARHVANHESWLQVAKATP---LRGLILTGWARFNHTAALCESLPSGLPCLALCLATWRNGACDQTTIQHVTSSLGLSSL 828
            +YS  EV+  + L G   LEVVPLVQTFGH+EFVLKHG+FA  RE       L P  P++  L   +I Q +  HP + R+H+GCDEV+ LG    SR   Q    S   L L H  A+ S  +AR   +TPL W DML +  E +L   G     E V+W Y  ++     + L  K    G   +W ASA++GA+ P    TP+  H+ NHE WLQVA   P   L+G++LTGW R +H + LCE LP G+P LA CL +  +G   +   + V + LG+S L
Sbjct:   63 SYSPAEVKEILHLAGLHQLEVVPLVQTFGHMEFVLKHGAFAHLREVAAFPNTLNPHEPESLALVGAMIDQVLQQHPGARRLHIGCDEVYYLGEGEASRQWLQQEQNSKAKLCLSHVRAVASHVLARHPHVTPLAWDDMLRDMPEDQLTASGVPQLVEPVLWDYAADLDVHGKVLLMQKYRQCGFRRLWAASAFKGATGPSQALTPVEHHLRNHERWLQVAAGGPVGSLQGIVLTGWQRHDHFSVLCELLPVGVPSLAACLQSLLHGGFTEAVKRRVENILGVSGL 347          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74533.17641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DMA8_CAFRO7.380e-8952.33Beta-N-acetylhexosaminidase n=3 Tax=Sar TaxID=2698... [more]
A0A5A8C0Y1_CAFRO2.540e-8752.33Beta-N-acetylhexosaminidase n=2 Tax=Cafeteria roen... [more]
HEXD_HUMAN5.160e-5541.75Hexosaminidase D n=8 Tax=Simiiformes TaxID=314293 ... [more]
UPI001E267F605.420e-5541.40hexosaminidase D isoform X6 n=1 Tax=Lemur catta Ta... [more]
A0A2K5RX74_CEBIM1.850e-5441.11Beta-N-acetylhexosaminidase n=1 Tax=Cebus imitator... [more]
UPI0007DC68002.810e-5441.75hexosaminidase D isoform X1 n=3 Tax=Homininae TaxI... [more]
Q8WVB3-23.400e-5441.75Isoform 2 of Hexosaminidase D n=15 Tax=Hominidae T... [more]
UPI0018A08BB95.420e-5441.75hexosaminidase D isoform X1 n=3 Tax=Choloepus dida... [more]
A0A8C8YLW3_PROSS7.760e-5440.70Beta-N-acetylhexosaminidase n=2 Tax=Lemuridae TaxI... [more]
UPI001E26C9E11.450e-5341.40hexosaminidase D isoform X1 n=3 Tax=Lemur catta Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74533contigM-pyrifera_M_contig74533:230..1063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score200.3
Seed ortholog evalue1.2e-48
Seed eggNOG ortholog9593.ENSGGOP00000001561
Preferred nameHEXDC
KEGG koko:K14459
KEGG ReactionR09323
KEGG Pathwayko00511,ko00513,ko01100,map00511,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0015929,GO:0016787,GO:0016798
EggNOG free text desc.PFAM Glycoside hydrolase, family 20
EggNOG OGs2QRCP@2759,35VC8@314146,38HK2@33154,3BGN2@33208,3CT37@33213,3JG2Z@40674,481XQ@7711,48W03@7742,4MR3P@9443,4N4N8@9604,arCOG07452@1
EC3.2.1.52
COG Functional cat.S
CAZyGH20
Best tax levelHominidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.182318-CDS-M-pyrifera_M_contig74533:229..10631622816644.182318-CDS-M-pyrifera_M_contig74533:229..1063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74533 230..1063 -
1692278095.4767716-CDS-M-pyrifera_M_contig74533:229..10631692278095.4767716-CDS-M-pyrifera_M_contig74533:229..1063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74533 230..1063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74533.17641.1prot_M-pyrifera_M_contig74533.17641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74533 230..1063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74533.17641.1

>prot_M-pyrifera_M_contig74533.17641.1 ID=prot_M-pyrifera_M_contig74533.17641.1|Name=mRNA_M-pyrifera_M_contig74533.17641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=278bp
AYSAEEVERAVGLCGELGLEVVPLVQTFGHLEFVLKHGSFAAAREDPESF
MDLCPEAPDASLLAEELIRQTVALHPTSTRIHVGCDEVFSLGSHPRSRAV
SQVRSLPSLFLQHALVSCRVARSLSLTPLLWHDMLGEAGERELWELGRVA
AEVVVWSYGTEVGAGVDMALFGKLEAAGVPVWGASAWRGASAPDAIHTPI
ARHVANHESWLQVAKATPLRGLILTGWARFNHTAALCESLPSGLPCLALC
LATWRNGACDQTTIQHVTSSLGLSSLPL
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mRNA from alignment at M-pyrifera_M_contig74533:230..1063-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74533.17641.1 ID=mRNA_M-pyrifera_M_contig74533.17641.1|Name=mRNA_M-pyrifera_M_contig74533.17641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig74533:230..1063- (Macrocystis pyrifera P11B4 male)
GCGTACAGCGCGGAGGAGGTGGAGCGTGCGGTGGGGTTGTGCGGTGAGTT GGGTTTGGAGGTGGTTCCTTTGGTGCAGACGTTTGGGCACTTGGAGTTTG TGCTGAAGCACGGGAGCTTTGCAGCGGCGAGAGAAGACCCCGAGAGTTTC ATGGACCTGTGTCCTGAAGCCCCTGATGCGAGTTTGTTGGCGGAAGAGTT GATTCGTCAAACCGTCGCATTGCACCCGACTTCCACCCGCATCCACGTGG GTTGCGATGAAGTGTTTTCTCTCGGCTCCCACCCCCGGTCCAGGGCAGTA TCGCAGGTCCGCTCCTTACCCTCTCTTTTCCTCCAGCACGCTCTGGTGTC CTGCAGAGTGGCGCGTTCCCTCTCCCTCACCCCTCTTTTGTGGCACGACA TGCTCGGGGAGGCTGGGGAGAGGGAGCTGTGGGAGCTGGGGAGGGTTGCG GCGGAGGTGGTGGTGTGGAGCTACGGCACCGAGGTGGGCGCAGGCGTGGA TATGGCGCTGTTCGGGAAACTGGAGGCTGCTGGAGTGCCAGTGTGGGGGG CTTCCGCGTGGAGGGGGGCCAGTGCTCCCGATGCCATCCACACTCCAATC GCGAGACATGTGGCCAACCACGAATCTTGGCTGCAAGTGGCCAAGGCAAC TCCTCTCCGAGGCCTCATTCTCACGGGATGGGCCAGGTTCAACCACACAG CTGCTCTCTGTGAATCCCTCCCTTCCGGCCTGCCTTGCCTGGCCCTCTGC CTCGCGACCTGGAGGAATGGGGCGTGCGACCAAACCACCATCCAACACGT CACCTCCTCCCTCGGTCTCTCCTCCCTCCCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74533:230..1063-

>mRNA_M-pyrifera_M_contig74533.17641.1 ID=mRNA_M-pyrifera_M_contig74533.17641.1|Name=mRNA_M-pyrifera_M_contig74533.17641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig74533:230..1063- (Macrocystis pyrifera P11B4 male)
GCGTACAGCGCGGAGGAGGTGGAGCGTGCGGTGGGGTTGTGCGGTGAGTT
GGGTTTGGAGGTGGTTCCTTTGGTGCAGACGTTTGGGCACTTGGAGTTTG
TGCTGAAGCACGGGAGCTTTGCAGCGGCGAGAGAAGACCCCGAGAGTTTC
ATGGACCTGTGTCCTGAAGCCCCTGATGCGAGTTTGTTGGCGGAAGAGTT
GATTCGTCAAACCGTCGCATTGCACCCGACTTCCACCCGCATCCACGTGG
GTTGCGATGAAGTGTTTTCTCTCGGCTCCCACCCCCGGTCCAGGGCAGTA
TCGCAGGTCCGCTCCTTACCCTCTCTTTTCCTCCAGCACGCTCTGGTGTC
CTGCAGAGTGGCGCGTTCCCTCTCCCTCACCCCTCTTTTGTGGCACGACA
TGCTCGGGGAGGCTGGGGAGAGGGAGCTGTGGGAGCTGGGGAGGGTTGCG
GCGGAGGTGGTGGTGTGGAGCTACGGCACCGAGGTGGGCGCAGGCGTGGA
TATGGCGCTGTTCGGGAAACTGGAGGCTGCTGGAGTGCCAGTGTGGGGGG
CTTCCGCGTGGAGGGGGGCCAGTGCTCCCGATGCCATCCACACTCCAATC
GCGAGACATGTGGCCAACCACGAATCTTGGCTGCAAGTGGCCAAGGCAAC
TCCTCTCCGAGGCCTCATTCTCACGGGATGGGCCAGGTTCAACCACACAG
CTGCTCTCTGTGAATCCCTCCCTTCCGGCCTGCCTTGCCTGGCCCTCTGC
CTCGCGACCTGGAGGAATGGGGCGTGCGACCAAACCACCATCCAACACGT
CACCTCCTCCCTCGGTCTCTCCTCCCTCCCGCTCGCGTACAGCGCGGAGG
AGGTGGAGCGTGCGGTGGGGTTGTGCGGTGAGTTGGGTTTGGAGGTGGTT
CCTTTGGTGCAGACGTTTGGGCACTTGGAGTTTGTGCTGAAGCACGGGAG
CTTTGCAGCGGCGAGAGAAGACCCCGAGAGTTTCATGGACCTGTGTCCTG
AAGCCCCTGATGCGAGTTTGTTGGCGGAAGAGTTGATTCGTCAAACCGTC
GCATTGCACCCGACTTCCACCCGCATCCACGTGGGTTGCGATGAAGTGTT
TTCTCTCGGCTCCCACCCCCGGTCCAGGGCAGTATCGCAGGTCCGCTCCT
TACCCTCTCTTTTCCTCCAGCACGCTCTGGTGTCCTGCAGAGTGGCGCGT
TCCCTCTCCCTCACCCCTCTTTTGTGGCACGACATGCTCGGGGAGGCTGG
GGAGAGGGAGCTGTGGGAGCTGGGGAGGGTTGCGGCGGAGGTGGTGGTGT
GGAGCTACGGCACCGAGGTGGGCGCAGGCGTGGATATGGCGCTGTTCGGG
AAACTGGAGGCTGCTGGAGTGCCAGTGTGGGGGGCTTCCGCGTGGAGGGG
GGCCAGTGCTCCCGATGCCATCCACACTCCAATCGCGAGACATGTGGCCA
ACCACGAATCTTGGCTGCAAGTGGCCAAGGCAACTCCTCTCCGAGGCCTC
ATTCTCACGGGATGGGCCAGGTTCAACCACACAGCTGCTCTCTGTGAATC
CCTCCCTTCCGGCCTGCCTTGCCTGGCCCTCTGCCTCGCGACCTGGAGGA
ATGGGGCGTGCGACCAAACCACCATCCAACACGTCACCTCCTCCCTCGGT
CTCTCCTCCCTCCCGCTC
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