mRNA_M-pyrifera_M_contig74527.17639.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74527.17639.1
Unique NamemRNA_M-pyrifera_M_contig74527.17639.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A6I6A9B2_9PLAN (DUF1501 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A9B2_9PLAN)

HSP 1 Score: 236 bits (603), Expect = 2.990e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA
Sbjct:  385 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 491
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A350EXN3_9BACT (Sulfatase (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A350EXN3_9BACT)

HSP 1 Score: 203 bits (516), Expect = 5.130e-66
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRT+YCQG L+RENYGRDHHPRCF++WMAGGGIK G VYG TDDFSYNIV  P HIHD NATIL CLGIDHR+LTYKFQGLD RLTGVEE HP++ ILA
Sbjct:    2 LVIWGGEFGRTIYCQGTLTRENYGRDHHPRCFTIWMAGGGIKPGIVYGETDDFSYNIVKDPAHIHDLNATILHCLGIDHRRLTYKFQGLDMRLTGVEEQHPIRGILA 108
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A6CAJ6_9PLAN (Uncharacterized protein n=15 Tax=Planctomycetaceae TaxID=126 RepID=A6CAJ6_9PLAN)

HSP 1 Score: 209 bits (533), Expect = 8.540e-64
Identity = 90/107 (84.11%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LV+WGGEFGRTVYCQGKL+RENYGRDHHPRCFSVWMAGGGIKKG V+G+TDDFSYN+ + PVHIH+ NATIL+CLGIDH+KLTYKFQGLDQRLTGVE+H PV++ILA
Sbjct:  385 LVVWGGEFGRTVYCQGKLTRENYGRDHHPRCFSVWMAGGGIKKGVVHGTTDDFSYNVTENPVHIHEMNATILKCLGIDHKKLTYKFQGLDQRLTGVEDHSPVQEILA 491
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A177QL02_9PLAN (Sulfatase n=1 Tax=Planctomycetaceae bacterium SCGC AG-212-F19 TaxID=1799658 RepID=A0A177QL02_9PLAN)

HSP 1 Score: 205 bits (522), Expect = 2.960e-62
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDIL 318
            LVIWGGEFGRT+YCQGKL+RENYGRDHHPRCF +WMAGGG+K G V+G TDDFSYNI DKPVHIHD NATIL CLGIDHR+L+YKFQGLD R+TGVEEHH VK+IL
Sbjct:  375 LVIWGGEFGRTIYCQGKLTRENYGRDHHPRCFPIWMAGGGVKGGIVHGETDDFSYNITDKPVHIHDMNATILHCLGIDHRRLSYKFQGLDMRMTGVEEHHAVKEIL 480
[Close]
BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A5B9WES6_9BACT (Uncharacterized protein n=2 Tax=Aquisphaera TaxID=1511635 RepID=A0A5B9WES6_9BACT)

HSP 1 Score: 204 bits (520), Expect = 1.080e-61
Identity = 90/107 (84.11%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRTVYCQG LSRENYGRDHHP+CF VW AG G+KKG VYG TDDFSYN+V+ P HIHD NATIL CLGIDHRKLTYKFQGLD RLTGVEEH PVK ILA
Sbjct:  403 LVIWGGEFGRTVYCQGPLSRENYGRDHHPKCFPVWFAGAGVKKGVVYGETDDFSYNVVENPAHIHDLNATILHCLGIDHRKLTYKFQGLDMRLTGVEEHDPVKGILA 509
[Close]
BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A3M1V891_9BACT (DUF1501 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1V891_9BACT)

HSP 1 Score: 199 bits (506), Expect = 8.300e-60
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRT+YCQGKL+R NYGRDHHPRCF++WMAGGGIK G VYG TDDFSYNIV+ PVHIHD NATIL CLGIDHR+L+ KFQGLD RLTGVE+H PV DILA
Sbjct:  382 LVIWGGEFGRTIYCQGKLTRNNYGRDHHPRCFTIWMAGGGIKPGIVYGETDDFSYNIVENPVHIHDQNATILHCLGIDHRRLSVKFQGLDIRLTGVEDHGPVYDILA 488
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: UPI00126047C0 (DUF1501 domain-containing protein n=2 Tax=Tautonia TaxID=2680020 RepID=UPI00126047C0)

HSP 1 Score: 199 bits (506), Expect = 9.040e-60
Identity = 85/107 (79.44%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRT+YCQG L+RENYGRDHHPRCF++WMAGGGIK G V+G TDDFSYN+V  PVHIH+ NATILQCLGIDH++LTYKFQGLD RLTGVE+H PV+ +LA
Sbjct:  386 LVIWGGEFGRTIYCQGGLTRENYGRDHHPRCFTIWMAGGGIKPGIVHGETDDFSYNVVQDPVHIHEMNATILQCLGIDHKRLTYKFQGLDMRLTGVEDHRPVQALLA 492
[Close]
BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A353E105_9BACT (Sulfatase (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A353E105_9BACT)

HSP 1 Score: 186 bits (472), Expect = 7.360e-59
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVE-EHHPVKDILA 321
            LV+WGGEFGRT+YCQGKL R NYGRDHHPRCF++WMAGGGI+ G  YGSTDDFSYNI + PVHI D NATIL CLGIDHRKLTY+FQGLDQRLTG+E E   +  +LA
Sbjct:   33 LVVWGGEFGRTIYCQGKLERSNYGRDHHPRCFTMWMAGGGIRGGMTYGSTDDFSYNIEEDPVHIRDLNATILHCLGIDHRKLTYRFQGLDQRLTGIEAEARIIHPLLA 140
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BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A142YNF5_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A142YNF5_9PLAN)

HSP 1 Score: 194 bits (494), Expect = 1.090e-58
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LVIWGGEFGRTVYCQG LSRENYGRDHHP+CF VWMAGGG+KKG V+G TDDFSYN+V+ PVHIHD NATIL C+GIDHR+LT+K QGLD RLTGV E +PV+ ILA
Sbjct:  314 LVIWGGEFGRTVYCQGPLSRENYGRDHHPKCFPVWMAGGGVKKGVVHGETDDFSYNVVENPVHIHDMNATILHCMGIDHRRLTFKSQGLDMRLTGVLEQNPVQAILA 420
[Close]
BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Match: A0A7Y4QJ19_9BACT (DUF1501 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4QJ19_9BACT)

HSP 1 Score: 196 bits (498), Expect = 1.310e-58
Identity = 86/107 (80.37%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGSTDDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHHPVKDILA 321
            LV+WGGEFGRTVYCQGKL++ +YGRDHHPRCF++WMAGGGIK G VYG TDDFSYN+V  PVHI D NATIL CLGIDHR+L+YKFQGLDQRLTGVEE +PVK ILA
Sbjct:  383 LVVWGGEFGRTVYCQGKLTKTDYGRDHHPRCFTMWMAGGGIKGGTVYGETDDFSYNVVKDPVHIRDINATILHCLGIDHRRLSYKFQGLDQRLTGVEEANPVKGILA 489
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74527.17639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A9B2_9PLAN2.990e-74100.00DUF1501 domain-containing protein n=6 Tax=Gimesia ... [more]
A0A350EXN3_9BACT5.130e-6682.24Sulfatase (Fragment) n=1 Tax=Verrucomicrobiales ba... [more]
A6CAJ6_9PLAN8.540e-6484.11Uncharacterized protein n=15 Tax=Planctomycetaceae... [more]
A0A177QL02_9PLAN2.960e-6283.02Sulfatase n=1 Tax=Planctomycetaceae bacterium SCGC... [more]
A0A5B9WES6_9BACT1.080e-6184.11Uncharacterized protein n=2 Tax=Aquisphaera TaxID=... [more]
A0A3M1V891_9BACT8.300e-6082.24DUF1501 domain-containing protein n=1 Tax=Planctom... [more]
UPI00126047C09.040e-6079.44DUF1501 domain-containing protein n=2 Tax=Tautonia... [more]
A0A353E105_9BACT7.360e-5975.93Sulfatase (Fragment) n=1 Tax=Verrucomicrobiales ba... [more]
A0A142YNF5_9PLAN1.090e-5879.44Uncharacterized protein n=2 Tax=Planctomycetia Tax... [more]
A0A7Y4QJ19_9BACT1.310e-5880.37DUF1501 domain-containing protein n=1 Tax=Verrucom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74527contigM-pyrifera_M_contig74527:749..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score211.5
Seed ortholog evalue2e-52
Seed eggNOG ortholog344747.PM8797T_17227
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1501)
EggNOG OGs2J4YY@203682,COG4102@1,COG4102@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.0598555-CDS-M-pyrifera_M_contig74527:748..10721622816644.0598555-CDS-M-pyrifera_M_contig74527:748..1072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74527 749..1072 -
1692278095.39916-CDS-M-pyrifera_M_contig74527:748..10721692278095.39916-CDS-M-pyrifera_M_contig74527:748..1072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74527 749..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74527.17639.1prot_M-pyrifera_M_contig74527.17639.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74527 749..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74527.17639.1

>prot_M-pyrifera_M_contig74527.17639.1 ID=prot_M-pyrifera_M_contig74527.17639.1|Name=mRNA_M-pyrifera_M_contig74527.17639.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LVIWGGEFGRTVYCQGKLSRENYGRDHHPRCFSVWMAGGGIKKGQVYGST
DDFSYNIVDKPVHIHDFNATILQCLGIDHRKLTYKFQGLDQRLTGVEEHH
PVKDILA*
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mRNA from alignment at M-pyrifera_M_contig74527:749..1072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74527.17639.1 ID=mRNA_M-pyrifera_M_contig74527.17639.1|Name=mRNA_M-pyrifera_M_contig74527.17639.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig74527:749..1072- (Macrocystis pyrifera P11B4 male)
CTGGTCATCTGGGGCGGTGAATTCGGCCGTACCGTCTACTGCCAGGGGAA
ACTCAGTCGTGAAAACTACGGACGTGACCACCACCCCCGCTGCTTCTCCG
TCTGGATGGCCGGTGGCGGCATCAAAAAAGGACAGGTCTACGGGTCGACC
GACGATTTCAGTTACAACATCGTTGACAAGCCAGTCCACATCCATGATTT
CAACGCAACGATCCTGCAGTGCCTGGGTATTGATCACCGCAAACTGACCT
ATAAATTTCAGGGCCTTGATCAGCGGCTCACCGGCGTCGAAGAACATCAC
CCGGTCAAAGACATCCTCGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74527:749..1072-

>mRNA_M-pyrifera_M_contig74527.17639.1 ID=mRNA_M-pyrifera_M_contig74527.17639.1|Name=mRNA_M-pyrifera_M_contig74527.17639.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig74527:749..1072- (Macrocystis pyrifera P11B4 male)
CTGGTCATCTGGGGCGGTGAATTCGGCCGTACCGTCTACTGCCAGGGGAA
ACTCAGTCGTGAAAACTACGGACGTGACCACCACCCCCGCTGCTTCTCCG
TCTGGATGGCCGGTGGCGGCATCAAAAAAGGACAGGTCTACGGGTCGACC
GACGATTTCAGTTACAACATCGTTGACAAGCCAGTCCACATCCATGATTT
CAACGCAACGATCCTGCAGTGCCTGGGTATTGATCACCGCAAACTGACCT
ATAAATTTCAGGGCCTTGATCAGCGGCTCACCGGCGTCGAAGAACATCAC
CCGGTCAAAGACATCCTCGCATGACTGGTCATCTGGGGCGGTGAATTCGG
CCGTACCGTCTACTGCCAGGGGAAACTCAGTCGTGAAAACTACGGACGTG
ACCACCACCCCCGCTGCTTCTCCGTCTGGATGGCCGGTGGCGGCATCAAA
AAAGGACAGGTCTACGGGTCGACCGACGATTTCAGTTACAACATCGTTGA
CAAGCCAGTCCACATCCATGATTTCAACGCAACGATCCTGCAGTGCCTGG
GTATTGATCACCGCAAACTGACCTATAAATTTCAGGGCCTTGATCAGCGG
CTCACCGGCGTCGAAGAACATCACCCGGTCAAAGACATCCTCGCATGA
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