mRNA_M-pyrifera_M_contig74524.17637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74524.17637.1
Unique NamemRNA_M-pyrifera_M_contig74524.17637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: A7RY22_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RY22_NEMVE)

HSP 1 Score: 65.1 bits (157), Expect = 1.610e-9
Identity = 50/192 (26.04%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   13 LGFLFFGIFTFLVLYSVTELDWWWILLISLPVGVLGAVLFHCLYLGGVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTWAVIFTAALITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETT 588
            LGF+F  + TF+++ + T L  W ++ +SL VG+   +L   +   G+F  G   GF + +     + ++      T  W   + + ++   +L+ G++T++FQ+ L I+ TS+ G  L+    DY +      E   +     +Q  +  W+ ++++ +W L    GI+VQF  T + YNH     V + T
Sbjct:   12 LGFIFATLVTFVIINNHTTLPIWGLIAVSLAVGLFCGLLTTFVTYCGLFLGGFAFGFFIALAGFFVVEFFYH---ITIKW---IPFGILLGLSLLLGLLTLRFQKPLFIMATSMVGGVLLCGGIDYFMEGYLLLEYTWHRIVAGHQLIDHCWITWVILGIWPLFFVAGIIVQFAKTGRRYNHRAGMLVLQLT 197          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: UPI00148A5C19 (transmembrane protein 198 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5C19)

HSP 1 Score: 62.0 bits (149), Expect = 6.950e-8
Identity = 58/200 (29.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:   16 GFLFFGIFTFLVLYSVTELDWWWILLISLPVGVLGAVLFHCLYLGGVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTW---AVIFTAALITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETTHVINIH 606
            GF+F  +  +LVL   + L     + ++L  G+L  +L   +   G+F  G  LG  +G+V +  ++ +V         FI + W    VI  A LI  +VT+KFQ+  +I+GTSV G  LMV+  DY I   +    +    TG        W +++++  W     +G V Q+++T +GY+H+     +  T  +N+H
Sbjct:   88 GFIFTSVLVYLVLSQHSLLPVEGNIGVALGSGLLIGLLTMLVQYVGLFFTGFQLGAAIGVVSLIVVDLFV---------FIPIHWIRIGVICGAGLICAIVTLKFQKGGMILGTSVFGGALMVSCLDYFIEQLAMVTFVWGEVTGTASSLVC-WYSWVLLGCWLFCFLVGAVTQWRITGQGYDHNEA-VQSRRTKKVNLH 276          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: K1PCE7_CRAGI (DUF4203 domain-containing protein n=3 Tax=Crassostrea TaxID=6564 RepID=K1PCE7_CRAGI)

HSP 1 Score: 61.6 bits (148), Expect = 9.440e-8
Identity = 57/200 (28.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:   16 GFLFFGIFTFLVLYSVTELDWWWILLISLPVGVLGAVLFHCLYLGGVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTW---AVIFTAALITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETTHVINIH 606
            GF+F  +  +LVL   + L     + ++L  G+L  +L   +   G+F  G  LG  +G+V +  ++ +V         FI + W    VI  A LI  +VT+KFQ+  +I+GTSV G  LMV+  DY I   +    +    TG        W +++++  W     +G + Q+++T +GY+H+     +  T  +N+H
Sbjct:   88 GFIFTSVLVYLVLSQHSLLPVEGNIGVALGSGLLIGLLTMLVQYVGLFFTGFQLGAAIGVVSLIVVDLFV---------FIPIHWIRIGVICGAGLICAIVTLKFQKGGMILGTSVFGGALMVSCLDYFIEQLAMVTFVWGEVTGTASSLVC-WYSWVLLGCWLFCFLVGAITQWRITGQGYDHNEA-VQSRRTKKVNLH 276          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: A0A7M7P5N3_STRPU (DUF4203 domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7P5N3_STRPU)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-7
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   94 ISLPVGVLGAVLFHCLYLGGVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTWAVIFTAALITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSG------WVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETTHV 594
            I+L +G+L  ++   + + G+F  GV +G    ++ +  +  +V   V      + +   + F   ++ G++T+KFQR  +I+ TS+ G  ++    DY +        L  +    Y  F         W ++L++ALW   S +GI++QF++TAKG+NH       +T  V
Sbjct:  118 IALAIGLLCGLITMLIQIVGLFMTGVHMGLFSAIIVLIIVEQFVHLDV------LLIPIGITFILGIVFGLITLKFQRTFVILATSLIGGAIVATCTDYYLE-------LFRMVNYVYDRFRLQVSLEPCWYSWLILALWPFVSLVGIIIQFKVTAKGFNHKQVSGHTKTRRV 277          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: A0A1Y1Y9B3_9FUNG (DUF4203 domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y9B3_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 3.040e-6
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   88 LLISLPVGVLGAVLFHCLYLGGVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTWAVIFTAALIT-GVVTVKF-QRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDF-NSGWVAYLMVALWFLASFIGIVVQFQ 534
            L++++  G+LG  LF C++  G+  +G + GF LGM  +      +GD +         T  V+F  ALI  G+V + F ++ ++I+GT++ GAY+++   DY I  G F++ LV    GA Q F ++    Y M+A   + + IG VVQ++
Sbjct:   93 LVVAVVAGILGGCLFMCVWKLGIAAIGALGGFALGMFILS-----LGDGMLIA----GSTGRVMFIIALIVVGIVGIFFFEKHVVIVGTAMAGAYMLIVGIDYFIGTG-FTQHLVAFLNGAGQVFYHTNGRVYAMLASMAVLAVIGAVVQYR 234          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: UPI0018D966A2 (transmembrane protein 198-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D966A2)

HSP 1 Score: 54.3 bits (129), Expect = 3.170e-5
Identity = 31/104 (29.81%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  295 ITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETTHVINIH 606
            I G+ T+KFQR L+II T + G  ++    DY +      E + + F    +     W ++L++  W + + +GIV+Q+++TA+GY+H   K     +H + +H
Sbjct:  172 ICGLATLKFQRHLVIIATGIIGGAVVATCADYYLELFRMVEYVYDRFR-VQESHAPCWYSWLILGTWPVIALLGIVIQYRVTARGYDHRDGKKKMMKSHHVELH 274          
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Match: UPI0013903B29 (transmembrane protein 198 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013903B29)

HSP 1 Score: 51.6 bits (122), Expect = 4.680e-5
Identity = 28/94 (29.79%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  289 ALITGVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQDFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTK 570
            +L+ G++T++FQ+ L I+ TS+ G  L+    DY +      E   +     +Q  +  W+ ++++ +W L    GI+VQF  T + YNH   K
Sbjct:   10 SLLLGLLTLRFQKPLFIMATSMVGGVLLCGGIDYFMEGYLLLEYTWHRIVAGHQLIDHCWITWVILGIWPLFFVAGIIVQFAKTGRRYNHRAGK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74524.17637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A7RY22_NEMVE1.610e-926.04Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI00148A5C196.950e-829.00transmembrane protein 198 n=1 Tax=Crassostrea giga... [more]
K1PCE7_CRAGI9.440e-828.50DUF4203 domain-containing protein n=3 Tax=Crassost... [more]
A0A7M7P5N3_STRPU1.390e-726.01DUF4203 domain-containing protein n=2 Tax=Echinace... [more]
A0A1Y1Y9B3_9FUNG3.040e-632.89DUF4203 domain-containing protein n=1 Tax=Basidiob... [more]
UPI0018D966A23.170e-529.81transmembrane protein 198-like n=1 Tax=Patiria min... [more]
UPI0013903B294.680e-529.79transmembrane protein 198 n=1 Tax=Nematostella vec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74524contigM-pyrifera_M_contig74524:459..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue7.5e-08
Seed eggNOG ortholog45351.EDO43619
Preferred nameTMEM198
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0012506,GO:0016020,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0031090,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0060828,GO:0065007,GO:0071944,GO:0090263,GO:0097708
EggNOG free text desc.transmembrane protein 198
EggNOG OGs28JN9@1,2QS1E@2759,39UA3@33154,3BAY9@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size612
Cds size612
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.982365-CDS-M-pyrifera_M_contig74524:458..10701622816643.982365-CDS-M-pyrifera_M_contig74524:458..1070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74524 459..1070 -
1692278095.368275-CDS-M-pyrifera_M_contig74524:458..10701692278095.368275-CDS-M-pyrifera_M_contig74524:458..1070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74524 459..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74524.17637.1prot_M-pyrifera_M_contig74524.17637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74524 459..1070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74524.17637.1

>prot_M-pyrifera_M_contig74524.17637.1 ID=prot_M-pyrifera_M_contig74524.17637.1|Name=mRNA_M-pyrifera_M_contig74524.17637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
MILVLGFLFFGIFTFLVLYSVTELDWWWILLISLPVGVLGAVLFHCLYLG
GVFCVGVVLGFLLGMVFMGFINYYVGDSVATTTWFIALTWAVIFTAALIT
GVVTVKFQRALLIIGTSVGGAYLMVATFDYIISDGSFSEILVNVFTGAYQ
DFNSGWVAYLMVALWFLASFIGIVVQFQLTAKGYNHSPTKTVNETTHVIN
IHS*
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mRNA from alignment at M-pyrifera_M_contig74524:459..1070-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74524.17637.1 ID=mRNA_M-pyrifera_M_contig74524.17637.1|Name=mRNA_M-pyrifera_M_contig74524.17637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig74524:459..1070- (Macrocystis pyrifera P11B4 male)
ATGATTCTCGTGCTGGGCTTCCTCTTCTTTGGCATCTTCACCTTCTTGGT ACTCTACAGCGTGACGGAGCTGGACTGGTGGTGGATTCTGCTCATCTCCC TGCCAGTGGGCGTGCTCGGCGCAGTGCTCTTCCACTGCCTCTACCTTGGA GGCGTCTTCTGCGTTGGAGTGGTGCTGGGCTTCCTCCTCGGCATGGTGTT CATGGGCTTCATCAACTACTACGTCGGAGACTCAGTGGCGACAACCACAT GGTTCATTGCGCTCACGTGGGCAGTGATCTTCACTGCTGCACTCATCACT GGAGTTGTCACTGTGAAGTTCCAGAGAGCTCTTCTCATTATTGGCACCTC AGTGGGAGGTGCGTATCTCATGGTGGCCACATTCGACTACATCATCTCCG ATGGAAGCTTCTCCGAGATTCTCGTCAACGTCTTCACTGGCGCCTACCAG GACTTCAACAGCGGGTGGGTTGCGTATCTCATGGTGGCTCTATGGTTCCT CGCTTCCTTCATTGGTATTGTGGTGCAGTTCCAGCTCACTGCCAAGGGCT ACAACCACTCCCCAACGAAGACCGTGAATGAGACCACGCACGTCATCAAC ATCCATTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74524:459..1070-

>mRNA_M-pyrifera_M_contig74524.17637.1 ID=mRNA_M-pyrifera_M_contig74524.17637.1|Name=mRNA_M-pyrifera_M_contig74524.17637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig74524:459..1070- (Macrocystis pyrifera P11B4 male)
ATGATTCTCGTGCTGGGCTTCCTCTTCTTTGGCATCTTCACCTTCTTGGT
ACTCTACAGCGTGACGGAGCTGGACTGGTGGTGGATTCTGCTCATCTCCC
TGCCAGTGGGCGTGCTCGGCGCAGTGCTCTTCCACTGCCTCTACCTTGGA
GGCGTCTTCTGCGTTGGAGTGGTGCTGGGCTTCCTCCTCGGCATGGTGTT
CATGGGCTTCATCAACTACTACGTCGGAGACTCAGTGGCGACAACCACAT
GGTTCATTGCGCTCACGTGGGCAGTGATCTTCACTGCTGCACTCATCACT
GGAGTTGTCACTGTGAAGTTCCAGAGAGCTCTTCTCATTATTGGCACCTC
AGTGGGAGGTGCGTATCTCATGGTGGCCACATTCGACTACATCATCTCCG
ATGGAAGCTTCTCCGAGATTCTCGTCAACGTCTTCACTGGCGCCTACCAG
GACTTCAACAGCGGGTGGGTTGCGTATCTCATGGTGGCTCTATGGTTCCT
CGCTTCCTTCATTGGTATTGTGGTGCAGTTCCAGCTCACTGCCAAGGGCT
ACAACCACTCCCCAACGAAGACCGTGAATGAGACCACGCACGTCATCAAC
ATCCATTCGTGAATGATTCTCGTGCTGGGCTTCCTCTTCTTTGGCATCTT
CACCTTCTTGGTACTCTACAGCGTGACGGAGCTGGACTGGTGGTGGATTC
TGCTCATCTCCCTGCCAGTGGGCGTGCTCGGCGCAGTGCTCTTCCACTGC
CTCTACCTTGGAGGCGTCTTCTGCGTTGGAGTGGTGCTGGGCTTCCTCCT
CGGCATGGTGTTCATGGGCTTCATCAACTACTACGTCGGAGACTCAGTGG
CGACAACCACATGGTTCATTGCGCTCACGTGGGCAGTGATCTTCACTGCT
GCACTCATCACTGGAGTTGTCACTGTGAAGTTCCAGAGAGCTCTTCTCAT
TATTGGCACCTCAGTGGGAGGTGCGTATCTCATGGTGGCCACATTCGACT
ACATCATCTCCGATGGAAGCTTCTCCGAGATTCTCGTCAACGTCTTCACT
GGCGCCTACCAGGACTTCAACAGCGGGTGGGTTGCGTATCTCATGGTGGC
TCTATGGTTCCTCGCTTCCTTCATTGGTATTGTGGTGCAGTTCCAGCTCA
CTGCCAAGGGCTACAACCACTCCCCAACGAAGACCGTGAATGAGACCACG
CACGTCATCAACATCCATTCGTGA
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