mRNA_M-pyrifera_M_contig74489.17632.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74489.17632.1
Unique NamemRNA_M-pyrifera_M_contig74489.17632.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A8J4WY98_9TREM (Arginyl-tRNA--protein transferase 1 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4WY98_9TREM)

HSP 1 Score: 94.4 bits (233), Expect = 8.630e-20
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVL 264
            +V+ +       CGYC GK  G   T GM +K+++V DY+ +++ GWRRSGTY Y+P N+ TCCP   IR  A +F P+RSQ+R+L
Sbjct:   10 LVIPYGAYSSEKCGYCKGKAEGLHTTWGMSAKRLTVTDYQYMIDRGWRRSGTYCYKPLNEVTCCPCYTIRCNALDFRPSRSQKRLL 95
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BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A4S2MIY1_OPIFE (Arginyl-tRNA--protein transferase 1 n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MIY1_OPIFE)

HSP 1 Score: 92.4 bits (228), Expect = 4.100e-19
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 VGIVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVL 264
            V +V+ +  ++ + CGYC G   G   T GM +K+++V DY+ +++ GWRRSGTY Y+P N  TCCP   IR  A++F P+RS +R+L
Sbjct:    8 VSLVMPYGYHESARCGYCKGTLGGFHATWGMGTKRLTVSDYQYLIDRGWRRSGTYCYKPMNKVTCCPCYTIRCDAAKFRPSRSHKRLL 95
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BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: W7TI13_9STRA (Arginine-trna-protein transferase 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI13_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.050e-18
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGK-RRGRKRTA---GMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRV 261
            +V L  ++ G  CGYC  K R+G+K T+   G+ ++++   DY+A+++ GWRRSGTY YRP N+ TCCP   IRL+  +F P+RSQR+V
Sbjct:   36 VVELCGRHVG-RCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKV 123
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BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A2V0P085_9CHLO (Arginyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P085_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.880e-18
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 VGIVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVLLR 270
            + ++L + +N+G  CGYC G+  G   + GM++ +++V DY+ +++ GWRRSG Y Y+  N TTCC    IRL  SEF P+R QR++L R
Sbjct:    7 LSLILDYGENEGE-CGYCRGEHGGSSSSYGMQAYRLTVYDYQDLIDQGWRRSGKYVYKMDNATTCCCHYTIRLPVSEFAPSRGQRKLLRR 95
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BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A4D9CN87_9STRA (Arginyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CN87_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGK-RRGRKRTA---GMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRV 261
            +V L  ++ G  CGYC  K R+G+K T+   G+ ++++   DY+A+++ GWRRSGTY YRP N+ TCCP   IRL+  +F P+RSQR+V
Sbjct:   36 VVELCGRHAG-RCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKV 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: I2CP81_NANGC (Arginine-trna-protein transferase 1-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP81_NANGC)

HSP 1 Score: 87.8 bits (216), Expect = 1.490e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGK-RRGRKRTA---GMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRV 261
            +V L  ++ G  CGYC  K R+G+K T+   G+ ++++   DY+A+++ GWRRSGTY YRP N+ TCCP   IRL+  +F P+RSQR+V
Sbjct:   36 VVELCGRHVG-RCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKV 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A183JFK9_9TREM (ATE_N domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183JFK9_9TREM)

HSP 1 Score: 84.7 bits (208), Expect = 6.000e-17
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVLLRM 273
            +V+ +  +    CGYC      +K   GM +++++V DY+ +++ GWRRSGTY Y+P ND TCCP   IR  A  F   +S +RVL  M
Sbjct:    9 LVIPYGSHSSGQCGYCKNSSNDKKTNWGMMAERLTVSDYQYMIDRGWRRSGTYCYKPLNDVTCCPSYTIRCDALHFHLKKSHKRVLKNM 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A2H1C5H4_FASHE (Arginine-tRNA-protein transferase n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1C5H4_FASHE)

HSP 1 Score: 81.3 bits (199), Expect = 9.630e-17
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:    1 VGIVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVL 264
            V ++  +       CGYC G     + T GM +  ++V DY+ +++ GWRRSGTY Y+P N  TCCP   IR  A  F P+R+ +R+L
Sbjct:    6 VSLLTPYGPCTSDSCGYCKGGAEVERHTWGMGATSLTVSDYQYLIDRGWRRSGTYCYKPINTNTCCPAYTIRCDARHFHPSRAHKRIL 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: A0A8C4T1K2_ERPCA (Arginyl-tRNA--protein transferase 1 n=7 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T1K2_ERPCA)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-16
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVLLRMG 276
            IV  F   DG  CGYC  KR     + GM +  M+V DY+A+++ GWRRSG Y Y+P  + TCCPQ  IR  A  F P+++ ++VL ++G
Sbjct:    9 IVEYFGGEDGYKCGYC--KRETGNMSLGMWAHVMTVQDYQALIDRGWRRSGKYVYKPVMNRTCCPQYTIRCHAESFQPSKTHKKVLKKVG 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Match: UPI00109F9B3F (arginyl-tRNA--protein transferase 1 isoform X2 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109F9B3F)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-16
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    7 IVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWRRSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVLLRMG 276
            IV  F   DG  CGYC  KR     + GM +  M+V DY+A+++ GWRRSG Y Y+P  + TCCPQ  IR  A  F P+++ ++VL ++G
Sbjct:    9 IVEYFGGEDGYKCGYC--KRETGNMSLGMWAHVMTVQDYQALIDRGWRRSGKYVYKPVMNRTCCPQYTIRCHAESFQPSKTHKKVLKKVG 96
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74489.17632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4WY98_9TREM8.630e-2046.51Arginyl-tRNA--protein transferase 1 n=1 Tax=Parago... [more]
A0A4S2MIY1_OPIFE4.100e-1944.32Arginyl-tRNA--protein transferase 1 n=1 Tax=Opisth... [more]
W7TI13_9STRA1.050e-1847.19Arginine-trna-protein transferase 1 n=1 Tax=Nannoc... [more]
A0A2V0P085_9CHLO2.880e-1843.33Arginyltransferase n=1 Tax=Raphidocelis subcapitat... [more]
A0A4D9CN87_9STRA1.370e-1747.19Arginyltransferase n=1 Tax=Nannochloropsis salina ... [more]
I2CP81_NANGC1.490e-1747.19Arginine-trna-protein transferase 1-like protein (... [more]
A0A183JFK9_9TREM6.000e-1740.45ATE_N domain-containing protein n=1 Tax=Schistosom... [more]
A0A2H1C5H4_FASHE9.630e-1739.77Arginine-tRNA-protein transferase n=1 Tax=Fasciola... [more]
A0A8C4T1K2_ERPCA1.040e-1644.44Arginyl-tRNA--protein transferase 1 n=7 Tax=Polypt... [more]
UPI00109F9B3F1.040e-1644.44arginyl-tRNA--protein transferase 1 isoform X2 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74489contigM-pyrifera_M_contig74489:244..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score85.5
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog244447.XP_008320517.1
Preferred nameATE1
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway
EggNOG OGs38C7Y@33154,3BCB0@33208,3D0E7@33213,488ZH@7711,4965E@7742,49V67@7898,COG2935@1,KOG1193@2759
EC2.3.2.8
COG Functional cat.O
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.7996583-CDS-M-pyrifera_M_contig74489:243..6661622816643.7996583-CDS-M-pyrifera_M_contig74489:243..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74489 244..666 -
1692278095.298592-CDS-M-pyrifera_M_contig74489:243..6661692278095.298592-CDS-M-pyrifera_M_contig74489:243..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74489 244..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74489.17632.1prot_M-pyrifera_M_contig74489.17632.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74489 244..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74489.17632.1

>prot_M-pyrifera_M_contig74489.17632.1 ID=prot_M-pyrifera_M_contig74489.17632.1|Name=mRNA_M-pyrifera_M_contig74489.17632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VGIVLLFAQNDGSHCGYCDGKRRGRKRTAGMRSKKMSVLDYEAIMEYGWR
RSGTYFYRPQNDTTCCPQIPIRLKASEFTPTRSQRRVLLRMGASEGSKPK
PKSKKSSTLPPSVATCLEAVQEAVQRAVDAVEEGGAKLSVS
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mRNA from alignment at M-pyrifera_M_contig74489:244..666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74489.17632.1 ID=mRNA_M-pyrifera_M_contig74489.17632.1|Name=mRNA_M-pyrifera_M_contig74489.17632.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig74489:244..666- (Macrocystis pyrifera P11B4 male)
GTTGGGATTGTTTTGTTGTTCGCGCAGAATGATGGATCCCATTGCGGGTA
TTGCGATGGGAAGCGTCGTGGACGGAAGCGCACTGCGGGGATGAGGTCGA
AGAAGATGAGTGTTCTGGATTACGAAGCGATCATGGAGTATGGGTGGCGT
CGTAGTGGCACCTACTTTTATCGTCCTCAGAACGACACGACATGTTGTCC
TCAGATTCCGATCCGCCTCAAGGCGTCTGAGTTCACCCCTACGCGCTCGC
AGCGGCGGGTGTTGTTGCGAATGGGCGCCTCAGAAGGATCGAAACCGAAG
CCCAAATCGAAGAAATCCAGCACTTTGCCTCCTTCTGTCGCAACGTGTCT
GGAAGCAGTGCAAGAAGCTGTGCAAAGGGCAGTGGATGCAGTGGAGGAGG
GAGGAGCGAAGCTCAGTGTTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74489:244..666-

>mRNA_M-pyrifera_M_contig74489.17632.1 ID=mRNA_M-pyrifera_M_contig74489.17632.1|Name=mRNA_M-pyrifera_M_contig74489.17632.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig74489:244..666- (Macrocystis pyrifera P11B4 male)
GTTGGGATTGTTTTGTTGTTCGCGCAGAATGATGGATCCCATTGCGGGTA
TTGCGATGGGAAGCGTCGTGGACGGAAGCGCACTGCGGGGATGAGGTCGA
AGAAGATGAGTGTTCTGGATTACGAAGCGATCATGGAGTATGGGTGGCGT
CGTAGTGGCACCTACTTTTATCGTCCTCAGAACGACACGACATGTTGTCC
TCAGATTCCGATCCGCCTCAAGGCGTCTGAGTTCACCCCTACGCGCTCGC
AGCGGCGGGTGTTGTTGCGAATGGGCGCCTCAGAAGGATCGAAACCGAAG
CCCAAATCGAAGAAATCCAGCACTTTGCCTCCTTCTGTCGCAACGTGTCT
GGAAGCAGTGCAAGAAGCTGTGCAAAGGGCAGTGGATGCAGTGGAGGAGG
GAGGAGCGAAGCTCAGTGTTTCCGTTGGGATTGTTTTGTTGTTCGCGCAG
AATGATGGATCCCATTGCGGGTATTGCGATGGGAAGCGTCGTGGACGGAA
GCGCACTGCGGGGATGAGGTCGAAGAAGATGAGTGTTCTGGATTACGAAG
CGATCATGGAGTATGGGTGGCGTCGTAGTGGCACCTACTTTTATCGTCCT
CAGAACGACACGACATGTTGTCCTCAGATTCCGATCCGCCTCAAGGCGTC
TGAGTTCACCCCTACGCGCTCGCAGCGGCGGGTGTTGTTGCGAATGGGCG
CCTCAGAAGGATCGAAACCGAAGCCCAAATCGAAGAAATCCAGCACTTTG
CCTCCTTCTGTCGCAACGTGTCTGGAAGCAGTGCAAGAAGCTGTGCAAAG
GGCAGTGGATGCAGTGGAGGAGGGAGGAGCGAAGCTCAGTGTTTCC
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