mRNA_M-pyrifera_M_contig74485.17630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74485.17630.1
Unique NamemRNA_M-pyrifera_M_contig74485.17630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74485.17630.1 vs. uniprot
Match: A0A501PNQ1_9PROT (NAD(P)H-dependent oxidoreductase n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PNQ1_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 2.160e-5
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    7 VKIVAIAGTLRKAAFNKVVLKCAVAAAIAAGAEVEVIDLGEANLPMVNQDLE 162
            VKI+A AG++RKA+FNK ++K A A A  AGAEV  IDL    LP+ N DLE
Sbjct:    5 VKILAFAGSMRKASFNKSMVKAAAAGAEEAGAEVTYIDLRNYPLPLYNGDLE 56
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BLAST of mRNA_M-pyrifera_M_contig74485.17630.1 vs. uniprot
Match: A0A0W1LFZ8_9GAMM (FMN reductase n=6 Tax=Alteromonadales TaxID=135622 RepID=A0A0W1LFZ8_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 5.680e-5
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 KIVAIAGTLRKAAFNKVVLKCAVAAAIAAGAEVEVIDLGEANLPMVNQDLETK 168
            KI+A+AG+LRK +FN+ ++  A   A+  GAEVEVI L E ++P+ N+D+E +
Sbjct:    5 KIIALAGSLRKESFNQKLINEAARFALQTGAEVEVIQLNELDIPLFNEDIEAQ 57
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BLAST of mRNA_M-pyrifera_M_contig74485.17630.1 vs. uniprot
Match: D2QY73_PIRSD (NADPH-dependent FMN reductase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2QY73_PIRSD)

HSP 1 Score: 47.8 bits (112), Expect = 5.930e-5
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 IVAIAGTLRKAAFNKVVLKCAVAAAIAAGAEVEVIDLGEANLPMVNQDLE 162
            I+A AG+LR+ ++NK ++K A   A+AAGA VEVIDL E  LPM ++D+E
Sbjct:    7 ILAFAGSLRRDSYNKKLVKIAAEGAVAAGANVEVIDLTEYPLPMFDEDVE 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74485.17630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A501PNQ1_9PROT2.160e-557.69NAD(P)H-dependent oxidoreductase n=1 Tax=Emcibacte... [more]
A0A0W1LFZ8_9GAMM5.680e-547.17FMN reductase n=6 Tax=Alteromonadales TaxID=135622... [more]
D2QY73_PIRSD5.930e-554.00NADPH-dependent FMN reductase n=1 Tax=Pirellula st... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74485contigM-pyrifera_M_contig74485:876..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.724267-CDS-M-pyrifera_M_contig74485:875..10461622816643.724267-CDS-M-pyrifera_M_contig74485:875..1046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74485 876..1046 +
1692278095.2744963-CDS-M-pyrifera_M_contig74485:875..10461692278095.2744963-CDS-M-pyrifera_M_contig74485:875..1046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74485 876..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74485.17630.1prot_M-pyrifera_M_contig74485.17630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74485 876..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74485.17630.1

>prot_M-pyrifera_M_contig74485.17630.1 ID=prot_M-pyrifera_M_contig74485.17630.1|Name=mRNA_M-pyrifera_M_contig74485.17630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MAVKIVAIAGTLRKAAFNKVVLKCAVAAAIAAGAEVEVIDLGEANLPMVN
QDLETKN
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mRNA from alignment at M-pyrifera_M_contig74485:876..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74485.17630.1 ID=mRNA_M-pyrifera_M_contig74485.17630.1|Name=mRNA_M-pyrifera_M_contig74485.17630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig74485:876..1046+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTGAAGATCGTGGCGATTGCCGGCACCCTCAGGAAGGCTGCCTT
CAACAAGGTTGTACTCAAATGCGCCGTTGCAGCTGCGATTGCCGCTGGCG
CAGAGGTGGAAGTGATCGACCTCGGTGAGGCCAACCTCCCCATGGTCAAC
CAGGACCTGGAGACGAAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74485:876..1046+

>mRNA_M-pyrifera_M_contig74485.17630.1 ID=mRNA_M-pyrifera_M_contig74485.17630.1|Name=mRNA_M-pyrifera_M_contig74485.17630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig74485:876..1046+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTGAAGATCGTGGCGATTGCCGGCACCCTCAGGAAGGCTGCCTT
CAACAAGGTTGTACTCAAATGCGCCGTTGCAGCTGCGATTGCCGCTGGCG
CAGAGGTGGAAGTGATCGACCTCGGTGAGGCCAACCTCCCCATGGTCAAC
CAGGACCTGGAGACGAAGAATATGGCTGTGAAGATCGTGGCGATTGCCGG
CACCCTCAGGAAGGCTGCCTTCAACAAGGTTGTACTCAAATGCGCCGTTG
CAGCTGCGATTGCCGCTGGCGCAGAGGTGGAAGTGATCGACCTCGGTGAG
GCCAACCTCCCCATGGTCAACCAGGACCTGGAGACGAAGAAT
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