mRNA_M-pyrifera_M_contig74460.17625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74460.17625.1
Unique NamemRNA_M-pyrifera_M_contig74460.17625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74460.17625.1 vs. uniprot
Match: A0A7S1CFX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFX5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.390e-12
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:   10 SCDGIILGDYVARSIVMLATVVGINVSISLIRAE-YNNPWGAARRARIEQEGRGLDALYTRLQSLHCFRAAYVGFLLIPTFVLILQVSLLSWRADWV 297
            +C  + L +YV RS++ML  ++ +N +I+ +RA  +++PW  +           L A Y RL   H FR  ++ +LL+PT +LI Q+++LSW  +WV
Sbjct:  306 ACGALQLAEYVLRSLLMLGIIIAMNFNITHVRATIHDSPWAPS-----------LPAAYKRLNQFHSFRWTFLAYLLLPTLILIFQITILSWSFEWV 391
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BLAST of mRNA_M-pyrifera_M_contig74460.17625.1 vs. uniprot
Match: A0A7S3XKD3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKD3_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 3.140e-9
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   13 CDGIILGDYVARSIVMLATVVGINVSISLIRAEY-NNPWGAARRARIEQEGRGLDALYTRLQSLHCFRAAYVGFLLIPTFVLILQVSLLSWRADW 294
            C   +L +YVARS++ML  +V  N +I  +R    ++PW A           GL   Y  L     FR A++ +LL+PT +L++Q++LL+W  DW
Sbjct:   91 CRAFLLAEYVARSMLMLFIIVAANFNIHHLRLGLASSPWSA-----------GLALTYRHLADYTRFRWAFIAYLLLPTALLVVQMTLLTWEYDW 174
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BLAST of mRNA_M-pyrifera_M_contig74460.17625.1 vs. uniprot
Match: A0A7S2SFR7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFR7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.270e-6
Identity = 34/100 (34.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   10 SCDGIILGDYVARSIVMLATVVGINVSISLIR---AEYNNPWGAARRARIEQEGRGLDALYTRLQSLHCFRAAYVGFLLIPTFVLILQVS-LLSWRADWV 297
            +C G+ LG+Y+ RS+V+LA +V +N +I+ +R   AE   P       +           Y ++     FR A++ +LL PT +LIL+ + LLSW  +WV
Sbjct:   91 NCQGLTLGEYILRSLVLLAIIVAMNFNITQLRQMLAEVPPPITPHMAVQ-----------YAKVHIFQMFRWAFLAYLLAPTTLLILEAAVLLSWEYEWV 179
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BLAST of mRNA_M-pyrifera_M_contig74460.17625.1 vs. uniprot
Match: A0A7S2SFN9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFN9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.230e-6
Identity = 34/100 (34.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   10 SCDGIILGDYVARSIVMLATVVGINVSISLIR---AEYNNPWGAARRARIEQEGRGLDALYTRLQSLHCFRAAYVGFLLIPTFVLILQVS-LLSWRADWV 297
            +C G+ LG+Y+ RS+V+LA +V +N +I+ +R   AE   P       +           Y ++     FR A++ +LL PT +LIL+ + LLSW  +WV
Sbjct:  373 NCQGLTLGEYILRSLVLLAIIVAMNFNITQLRQMLAEVPPPITPHMAVQ-----------YAKVHIFQMFRWAFLAYLLAPTTLLILEAAVLLSWEYEWV 461
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74460.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1CFX5_9STRA4.390e-1235.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3XKD3_HETAK3.140e-935.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SFR7_9STRA1.270e-634.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SFN9_9STRA2.230e-634.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74460contigM-pyrifera_M_contig74460:1..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.4000742-CDS-M-pyrifera_M_contig74460:0..2971622816643.4000742-CDS-M-pyrifera_M_contig74460:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74460 1..297 -
1692278095.052539-CDS-M-pyrifera_M_contig74460:0..2971692278095.052539-CDS-M-pyrifera_M_contig74460:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74460 1..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74460.17625.1prot_M-pyrifera_M_contig74460.17625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74460 1..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74460.17625.1

>prot_M-pyrifera_M_contig74460.17625.1 ID=prot_M-pyrifera_M_contig74460.17625.1|Name=mRNA_M-pyrifera_M_contig74460.17625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
GITSCDGIILGDYVARSIVMLATVVGINVSISLIRAEYNNPWGAARRARI
EQEGRGLDALYTRLQSLHCFRAAYVGFLLIPTFVLILQVSLLSWRADWV
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mRNA from alignment at M-pyrifera_M_contig74460:1..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74460.17625.1 ID=mRNA_M-pyrifera_M_contig74460.17625.1|Name=mRNA_M-pyrifera_M_contig74460.17625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig74460:1..297- (Macrocystis pyrifera P11B4 male)
GGCATTACGAGTTGTGATGGAATCATTCTTGGCGACTATGTTGCGAGAAG
TATTGTTATGCTTGCCACTGTTGTTGGCATCAACGTCTCCATCTCGCTCA
TTCGTGCAGAGTATAACAATCCATGGGGTGCAGCTCGTCGTGCACGCATT
GAACAAGAAGGCCGTGGGTTAGATGCACTATACACCCGACTGCAATCACT
TCATTGTTTCCGAGCAGCATATGTCGGATTTCTCCTCATTCCAACCTTTG
TCCTCATCCTACAAGTTTCTCTTCTTTCATGGAGAGCTGATTGGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74460:1..297-

>mRNA_M-pyrifera_M_contig74460.17625.1 ID=mRNA_M-pyrifera_M_contig74460.17625.1|Name=mRNA_M-pyrifera_M_contig74460.17625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig74460:1..297- (Macrocystis pyrifera P11B4 male)
GGCATTACGAGTTGTGATGGAATCATTCTTGGCGACTATGTTGCGAGAAG
TATTGTTATGCTTGCCACTGTTGTTGGCATCAACGTCTCCATCTCGCTCA
TTCGTGCAGAGTATAACAATCCATGGGGTGCAGCTCGTCGTGCACGCATT
GAACAAGAAGGCCGTGGGTTAGATGCACTATACACCCGACTGCAATCACT
TCATTGTTTCCGAGCAGCATATGTCGGATTTCTCCTCATTCCAACCTTTG
TCCTCATCCTACAAGTTTCTCTTCTTTCATGGAGAGCTGATTGGGTTGGC
ATTACGAGTTGTGATGGAATCATTCTTGGCGACTATGTTGCGAGAAGTAT
TGTTATGCTTGCCACTGTTGTTGGCATCAACGTCTCCATCTCGCTCATTC
GTGCAGAGTATAACAATCCATGGGGTGCAGCTCGTCGTGCACGCATTGAA
CAAGAAGGCCGTGGGTTAGATGCACTATACACCCGACTGCAATCACTTCA
TTGTTTCCGAGCAGCATATGTCGGATTTCTCCTCATTCCAACCTTTGTCC
TCATCCTACAAGTTTCTCTTCTTTCATGGAGAGCTGATTGGGTT
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