mRNA_M-pyrifera_M_contig74454.17624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74454.17624.1
Unique NamemRNA_M-pyrifera_M_contig74454.17624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: A0A3D4UJI7_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UJI7_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 6.950e-15
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 MIGSLCNLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSAPGGARQGLRLAIEYFMWVHRIRRLR 207
            MIG + + IGA+W +L +G +S+FR +G YW WR HTA  +  AP G      LA+EY  W  R+RRLR
Sbjct:    1 MIGRVIDTIGALWVLLTLGVVSKFRFNGDYWQWRTHTALHAKGAPEGRLARAHLAMEYARWAWRMRRLR 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: A0A7V1HTH2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7V1HTH2_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-12
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   10 SLCNLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSAPGGARQGLRLAIEYFMWVHRIRRL 204
            S   L GA++E+LR+  +SRFRL G+YW WRM TA+  G+ P G R+ LR  +EY  WV  +RR+
Sbjct:    5 SFTTLPGALYELLRLLLLSRFRLRGRYWRWRMETAW--GNNPPGKREMLRAILEYARWVRSMRRM 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: A0A6N2ENT2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6N2ENT2_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-11
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 SLCNLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSAPGGARQGLRLAIEYFMWVHRIRRLR 207
            +L + IG  W ML +  I+RFRL G YW WR++TAF  GS P    +    A++Y  W HR+RRLR
Sbjct:    3 TLLDTIGGCWRMLCLLCITRFRLKGPYWTWRLNTAF--GSHPPKRAERFHAALDYARWAHRMRRLR 66
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: UPI00199C9986 (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI00199C9986)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-9
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   13 LCNLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSAPGGARQGLRLAIEYFMWVHRIRR 201
            L + +G ++++ R+G ++RF   G YW WR+HTAF  G  P    +  R  +EY  W+HR++R
Sbjct:    4 LTDTLGGLYQLARLGVLTRFDFRGPYWDWRLHTAFGKGY-PSSRHELFRSVLEYARWMHRMKR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: A0A2E3Q1L7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E3Q1L7_9BACT)

HSP 1 Score: 45.8 bits (107), Expect = 7.170e-5
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:   22 LIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSG-SAPGGARQGLRLAIEYFMWVHRIRR 201
            ++  +  +L +  ++RFRL G+YW WRM TA  S  SA   AR+  R  + Y  W  R+RR
Sbjct:    4 MMSGLLGLLHLAAVTRFRLRGRYWSWRMETALGSDRSAWPSARERRRAILLYGAWSRRLRR 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Match: A0A3L7PWZ0_9BACT (Uncharacterized protein n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7PWZ0_9BACT)

HSP 1 Score: 45.8 bits (107), Expect = 7.500e-5
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:   19 NLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSA--PGGARQGLRLAIEYFMWVHRIRRL 204
            + +  IW +  +G  + FRL G+YW WRM TAF +  +  P  A +  + AIEY  WV  +RR+
Sbjct:    2 HALRGIWNLALLGAKTGFRLRGRYWTWRMETAFGADRSKWPSAAARR-KAAIEYGAWVGAMRRM 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74454.17624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D4UJI7_9BACT6.950e-1547.83Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A7V1HTH2_9BACT2.630e-1249.23Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A6N2ENT2_9BACT1.440e-1146.97Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
UPI00199C99861.950e-938.10Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A2E3Q1L7_9BACT7.170e-539.34Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3L7PWZ0_9BACT7.500e-539.06Uncharacterized protein n=3 Tax=Planctomycetes Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74454contigM-pyrifera_M_contig74454:24..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.3610241-CDS-M-pyrifera_M_contig74454:23..2331622816643.3610241-CDS-M-pyrifera_M_contig74454:23..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74454 24..233 +
1692278095.0376046-CDS-M-pyrifera_M_contig74454:23..2331692278095.0376046-CDS-M-pyrifera_M_contig74454:23..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74454 24..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74454.17624.1prot_M-pyrifera_M_contig74454.17624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74454 24..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74454.17624.1

>prot_M-pyrifera_M_contig74454.17624.1 ID=prot_M-pyrifera_M_contig74454.17624.1|Name=mRNA_M-pyrifera_M_contig74454.17624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MIGSLCNLIGAIWEMLRVGWISRFRLSGKYWGWRMHTAFPSGSAPGGARQ
GLRLAIEYFMWVHRIRRLR*
back to top

mRNA from alignment at M-pyrifera_M_contig74454:24..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74454.17624.1 ID=mRNA_M-pyrifera_M_contig74454.17624.1|Name=mRNA_M-pyrifera_M_contig74454.17624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig74454:24..233+ (Macrocystis pyrifera P11B4 male)
ATGATCGGATCGCTGTGCAATCTGATCGGTGCGATCTGGGAGATGCTTCG
CGTTGGATGGATCTCCCGTTTCCGTCTCAGCGGGAAGTACTGGGGATGGC
GGATGCACACCGCGTTCCCGTCTGGGAGCGCCCCTGGGGGAGCTCGTCAG
GGACTCCGATTAGCGATCGAGTACTTCATGTGGGTCCATCGGATCCGCCG
CTTGCGCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74454:24..233+

>mRNA_M-pyrifera_M_contig74454.17624.1 ID=mRNA_M-pyrifera_M_contig74454.17624.1|Name=mRNA_M-pyrifera_M_contig74454.17624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig74454:24..233+ (Macrocystis pyrifera P11B4 male)
ATGATCGGATCGCTGTGCAATCTGATCGGTGCGATCTGGGAGATGCTTCG
CGTTGGATGGATCTCCCGTTTCCGTCTCAGCGGGAAGTACTGGGGATGGC
GGATGCACACCGCGTTCCCGTCTGGGAGCGCCCCTGGGGGAGCTCGTCAG
GGACTCCGATTAGCGATCGAGTACTTCATGTGGGTCCATCGGATCCGCCG
CTTGCGCTAAATGATCGGATCGCTGTGCAATCTGATCGGTGCGATCTGGG
AGATGCTTCGCGTTGGATGGATCTCCCGTTTCCGTCTCAGCGGGAAGTAC
TGGGGATGGCGGATGCACACCGCGTTCCCGTCTGGGAGCGCCCCTGGGGG
AGCTCGTCAGGGACTCCGATTAGCGATCGAGTACTTCATGTGGGTCCATC
GGATCCGCCGCTTGCGCTAA
back to top