mRNA_M-pyrifera_M_contig74429.17620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74429.17620.1
Unique NamemRNA_M-pyrifera_M_contig74429.17620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Match: A0A5A8DVQ5_CAFRO (Ion_trans_2 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVQ5_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 9.970e-20
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    7 QLFVAVVVAFAGIYTVVFFVGPTP-PFSVPQRAW---RGAFNAVKNDVSAVIAVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGFGIGVVGEAYARRQALKE 351
            Q ++A+V+AF GIY ++F +G     F+VP+RAW   RG     ++  S ++A+ FEF+YFS +V S+ GFGDV P AW AR+  +    ++ I N V+LG+G+  +GEA   R+A+K 
Sbjct:   97 QAYLALVIAFGGIYLLIFLLGAGENAFTVPERAWQDPRGGEQPTQSG-SVLLALVFEFMYFSFAVQSSTGFGDVAPSAWYARLACIAHILISTIFNSVVLGYGLAHIGEASRAREAVKR 214
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BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Match: A0A5A8CB63_CAFRO (Ion_trans_2 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CB63_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 9.970e-20
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    7 QLFVAVVVAFAGIYTVVFFVGPTP-PFSVPQRAW---RGAFNAVKNDVSAVIAVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGFGIGVVGEAYARRQALKE 351
            Q ++A+V+AF GIY ++F +G     F+VP+RAW   RG     ++  S ++A+ FEF+YFS +V S+ GFGDV P AW AR+  +    ++ I N V+LG+G+  +GEA   R+A+K 
Sbjct:   97 QAYLALVIAFGGIYLLIFLLGAGENAFTVPERAWQDPRGGEQPTQSG-SVLLALVFEFMYFSFAVQSSTGFGDVAPSAWYARLACIAHILISTIFNSVVLGYGLAHIGEASRAREAVKR 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8DVQ5_CAFRO9.970e-2042.02Ion_trans_2 domain-containing protein n=2 Tax=Cafe... [more]
A0A5A8CB63_CAFRO9.970e-2042.02Ion_trans_2 domain-containing protein n=1 Tax=Cafe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74429contigM-pyrifera_M_contig74429:641..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue8.4e-07
Seed eggNOG ortholog529818.AMSG_04935T0
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E3HK@1,2SAJR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.014579-CDS-M-pyrifera_M_contig74429:640..10061622816643.014579-CDS-M-pyrifera_M_contig74429:640..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74429 641..1006 -
1692278094.8225703-CDS-M-pyrifera_M_contig74429:640..10061692278094.8225703-CDS-M-pyrifera_M_contig74429:640..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74429 641..1006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74429.17620.1prot_M-pyrifera_M_contig74429.17620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74429 641..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74429.17620.1

>prot_M-pyrifera_M_contig74429.17620.1 ID=prot_M-pyrifera_M_contig74429.17620.1|Name=mRNA_M-pyrifera_M_contig74429.17620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
IFQLFVAVVVAFAGIYTVVFFVGPTPPFSVPQRAWRGAFNAVKNDVSAVI
AVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGF
GIGVVGEAYARRQALKERWLA*
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mRNA from alignment at M-pyrifera_M_contig74429:641..1006-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74429.17620.1 ID=mRNA_M-pyrifera_M_contig74429.17620.1|Name=mRNA_M-pyrifera_M_contig74429.17620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig74429:641..1006- (Macrocystis pyrifera P11B4 male)
ATCTTCCAGCTCTTCGTCGCAGTCGTTGTCGCATTTGCAGGCATCTACAC
CGTCGTCTTCTTCGTCGGGCCCACGCCCCCATTCTCCGTGCCACAGAGAG
CCTGGAGAGGCGCCTTCAACGCCGTCAAGAACGACGTCTCGGCAGTGATC
GCTGTCTTCTTCGAGTTTATCTACTTCTCCCTCTCCGTCGCCAGCACCGC
AGGCTTTGGCGACGTCGTGCCGCAGGCCTGGCTCGCCAGAATCATCGTCA
TGTTCCAAGCGCAGGTCGCCATGATCCTCAACATCGTCCTCCTCGGATTC
GGAATCGGAGTCGTTGGAGAAGCTTACGCCAGGAGACAAGCGCTCAAAGA
AAGGTGGCTCGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74429:641..1006-

>mRNA_M-pyrifera_M_contig74429.17620.1 ID=mRNA_M-pyrifera_M_contig74429.17620.1|Name=mRNA_M-pyrifera_M_contig74429.17620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig74429:641..1006- (Macrocystis pyrifera P11B4 male)
ATCTTCCAGCTCTTCGTCGCAGTCGTTGTCGCATTTGCAGGCATCTACAC
CGTCGTCTTCTTCGTCGGGCCCACGCCCCCATTCTCCGTGCCACAGAGAG
CCTGGAGAGGCGCCTTCAACGCCGTCAAGAACGACGTCTCGGCAGTGATC
GCTGTCTTCTTCGAGTTTATCTACTTCTCCCTCTCCGTCGCCAGCACCGC
AGGCTTTGGCGACGTCGTGCCGCAGGCCTGGCTCGCCAGAATCATCGTCA
TGTTCCAAGCGCAGGTCGCCATGATCCTCAACATCGTCCTCCTCGGATTC
GGAATCGGAGTCGTTGGAGAAGCTTACGCCAGGAGACAAGCGCTCAAAGA
AAGGTGGCTCGCGTAGATCTTCCAGCTCTTCGTCGCAGTCGTTGTCGCAT
TTGCAGGCATCTACACCGTCGTCTTCTTCGTCGGGCCCACGCCCCCATTC
TCCGTGCCACAGAGAGCCTGGAGAGGCGCCTTCAACGCCGTCAAGAACGA
CGTCTCGGCAGTGATCGCTGTCTTCTTCGAGTTTATCTACTTCTCCCTCT
CCGTCGCCAGCACCGCAGGCTTTGGCGACGTCGTGCCGCAGGCCTGGCTC
GCCAGAATCATCGTCATGTTCCAAGCGCAGGTCGCCATGATCCTCAACAT
CGTCCTCCTCGGATTCGGAATCGGAGTCGTTGGAGAAGCTTACGCCAGGA
GACAAGCGCTCAAAGAAAGGTGGCTCGCGTAG
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