mRNA_M-pyrifera_M_contig74420.17617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74420.17617.1
Unique NamemRNA_M-pyrifera_M_contig74420.17617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74420.17617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74420contigM-pyrifera_M_contig74420:11..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1035
Cds size1035
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.9004877-CDS-M-pyrifera_M_contig74420:10..10451622816642.9004877-CDS-M-pyrifera_M_contig74420:10..1045Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74420 11..1045 -
1692278094.7667134-CDS-M-pyrifera_M_contig74420:10..10451692278094.7667134-CDS-M-pyrifera_M_contig74420:10..1045Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74420 11..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74420.17617.1prot_M-pyrifera_M_contig74420.17617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74420 11..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74420.17617.1

>prot_M-pyrifera_M_contig74420.17617.1 ID=prot_M-pyrifera_M_contig74420.17617.1|Name=mRNA_M-pyrifera_M_contig74420.17617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=345bp
AWWHAAEELEALAEERGEAWTFASAYHWAVRFRAEEPLELVKLPHHMDRW
GSLDADEREATLAAVEELDAFLAHLQILTQDPEILRRVNARFQIADIHFD
FEAFEDLGPLYVLVRRDVALETQGRRGPRTFFERLEGADPGAYQAALTGA
HSVDFRRRQPDGSAWQMVLLGYEVETGLAQNQLAWLTLHWYIGDAAGRSF
DVVARVTDRDDRSYDFNHELAAGAHPSDTLAPGTILAESMAIPVPLDPTL
FGGPDLRGDAVPVKLWLALAEYDRAPVDATPDAPPGPKRLVGGLNPFQPS
GALPIDRRGEGPGGISKAGYRWSADGLFQVGGFWLPVPDAARTD*
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mRNA from alignment at M-pyrifera_M_contig74420:11..1045-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74420.17617.1 ID=mRNA_M-pyrifera_M_contig74420.17617.1|Name=mRNA_M-pyrifera_M_contig74420.17617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at M-pyrifera_M_contig74420:11..1045- (Macrocystis pyrifera P11B4 male)
GCGTGGTGGCACGCGGCCGAGGAGCTCGAAGCGCTCGCCGAGGAGCGCGG
CGAAGCGTGGACGTTCGCCAGCGCGTACCACTGGGCGGTGCGCTTCCGCG
CCGAGGAGCCGCTCGAGCTCGTCAAGCTGCCGCACCACATGGACCGCTGG
GGCAGCCTGGACGCGGACGAGCGCGAGGCGACGCTCGCGGCCGTCGAAGA
GCTCGACGCCTTCCTCGCGCACCTGCAGATCCTGACCCAGGACCCGGAGA
TCCTGCGGCGCGTCAACGCGCGCTTCCAGATCGCGGACATCCACTTCGAC
TTCGAGGCGTTCGAGGACCTCGGGCCGCTGTACGTGTTGGTGCGCCGGGA
CGTCGCGCTCGAGACGCAGGGCCGGCGTGGTCCGCGCACGTTCTTCGAGC
GCTTGGAAGGCGCCGATCCGGGTGCGTACCAAGCGGCGCTGACCGGCGCC
CACAGCGTCGACTTCCGGCGCCGCCAACCCGACGGCTCTGCCTGGCAGAT
GGTGCTGCTGGGCTACGAGGTCGAGACCGGCCTCGCGCAGAACCAGCTCG
CGTGGCTGACCCTCCATTGGTACATCGGCGACGCGGCGGGGCGCAGCTTC
GACGTCGTCGCGCGGGTCACGGACCGCGATGACCGCTCGTACGACTTCAA
CCACGAGCTGGCCGCCGGCGCGCACCCTTCGGACACGCTCGCGCCGGGCA
CGATCCTGGCCGAGAGCATGGCGATCCCCGTGCCGCTGGATCCGACGCTC
TTTGGCGGCCCGGACCTGCGCGGTGATGCGGTGCCGGTGAAGCTCTGGCT
GGCGCTCGCCGAGTACGACCGCGCGCCGGTCGATGCAACACCGGACGCGC
CCCCCGGACCCAAGCGACTCGTCGGCGGGCTCAACCCGTTCCAGCCCTCG
GGCGCGCTGCCCATCGACCGGCGCGGGGAAGGTCCGGGCGGCATCAGCAA
GGCGGGATACCGCTGGAGCGCGGACGGGCTGTTCCAGGTCGGCGGCTTCT
GGCTGCCGGTGCCGGACGCCGCGCGCACCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74420:11..1045-

>mRNA_M-pyrifera_M_contig74420.17617.1 ID=mRNA_M-pyrifera_M_contig74420.17617.1|Name=mRNA_M-pyrifera_M_contig74420.17617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2070bp|location=Sequence derived from alignment at M-pyrifera_M_contig74420:11..1045- (Macrocystis pyrifera P11B4 male)
GCGTGGTGGCACGCGGCCGAGGAGCTCGAAGCGCTCGCCGAGGAGCGCGG
CGAAGCGTGGACGTTCGCCAGCGCGTACCACTGGGCGGTGCGCTTCCGCG
CCGAGGAGCCGCTCGAGCTCGTCAAGCTGCCGCACCACATGGACCGCTGG
GGCAGCCTGGACGCGGACGAGCGCGAGGCGACGCTCGCGGCCGTCGAAGA
GCTCGACGCCTTCCTCGCGCACCTGCAGATCCTGACCCAGGACCCGGAGA
TCCTGCGGCGCGTCAACGCGCGCTTCCAGATCGCGGACATCCACTTCGAC
TTCGAGGCGTTCGAGGACCTCGGGCCGCTGTACGTGTTGGTGCGCCGGGA
CGTCGCGCTCGAGACGCAGGGCCGGCGTGGTCCGCGCACGTTCTTCGAGC
GCTTGGAAGGCGCCGATCCGGGTGCGTACCAAGCGGCGCTGACCGGCGCC
CACAGCGTCGACTTCCGGCGCCGCCAACCCGACGGCTCTGCCTGGCAGAT
GGTGCTGCTGGGCTACGAGGTCGAGACCGGCCTCGCGCAGAACCAGCTCG
CGTGGCTGACCCTCCATTGGTACATCGGCGACGCGGCGGGGCGCAGCTTC
GACGTCGTCGCGCGGGTCACGGACCGCGATGACCGCTCGTACGACTTCAA
CCACGAGCTGGCCGCCGGCGCGCACCCTTCGGACACGCTCGCGCCGGGCA
CGATCCTGGCCGAGAGCATGGCGATCCCCGTGCCGCTGGATCCGACGCTC
TTTGGCGGCCCGGACCTGCGCGGTGATGCGGTGCCGGTGAAGCTCTGGCT
GGCGCTCGCCGAGTACGACCGCGCGCCGGTCGATGCAACACCGGACGCGC
CCCCCGGACCCAAGCGACTCGTCGGCGGGCTCAACCCGTTCCAGCCCTCG
GGCGCGCTGCCCATCGACCGGCGCGGGGAAGGTCCGGGCGGCATCAGCAA
GGCGGGATACCGCTGGAGCGCGGACGGGCTGTTCCAGGTCGGCGGCTTCT
GGCTGCCGGTGCCGGACGCCGCGCGCACCGACTGAGCGTGGTGGCACGCG
GCCGAGGAGCTCGAAGCGCTCGCCGAGGAGCGCGGCGAAGCGTGGACGTT
CGCCAGCGCGTACCACTGGGCGGTGCGCTTCCGCGCCGAGGAGCCGCTCG
AGCTCGTCAAGCTGCCGCACCACATGGACCGCTGGGGCAGCCTGGACGCG
GACGAGCGCGAGGCGACGCTCGCGGCCGTCGAAGAGCTCGACGCCTTCCT
CGCGCACCTGCAGATCCTGACCCAGGACCCGGAGATCCTGCGGCGCGTCA
ACGCGCGCTTCCAGATCGCGGACATCCACTTCGACTTCGAGGCGTTCGAG
GACCTCGGGCCGCTGTACGTGTTGGTGCGCCGGGACGTCGCGCTCGAGAC
GCAGGGCCGGCGTGGTCCGCGCACGTTCTTCGAGCGCTTGGAAGGCGCCG
ATCCGGGTGCGTACCAAGCGGCGCTGACCGGCGCCCACAGCGTCGACTTC
CGGCGCCGCCAACCCGACGGCTCTGCCTGGCAGATGGTGCTGCTGGGCTA
CGAGGTCGAGACCGGCCTCGCGCAGAACCAGCTCGCGTGGCTGACCCTCC
ATTGGTACATCGGCGACGCGGCGGGGCGCAGCTTCGACGTCGTCGCGCGG
GTCACGGACCGCGATGACCGCTCGTACGACTTCAACCACGAGCTGGCCGC
CGGCGCGCACCCTTCGGACACGCTCGCGCCGGGCACGATCCTGGCCGAGA
GCATGGCGATCCCCGTGCCGCTGGATCCGACGCTCTTTGGCGGCCCGGAC
CTGCGCGGTGATGCGGTGCCGGTGAAGCTCTGGCTGGCGCTCGCCGAGTA
CGACCGCGCGCCGGTCGATGCAACACCGGACGCGCCCCCCGGACCCAAGC
GACTCGTCGGCGGGCTCAACCCGTTCCAGCCCTCGGGCGCGCTGCCCATC
GACCGGCGCGGGGAAGGTCCGGGCGGCATCAGCAAGGCGGGATACCGCTG
GAGCGCGGACGGGCTGTTCCAGGTCGGCGGCTTCTGGCTGCCGGTGCCGG
ACGCCGCGCGCACCGACTGA
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