mRNA_M-pyrifera_M_contig744.17614.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig744.17614.1
Unique NamemRNA_M-pyrifera_M_contig744.17614.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 6.050e-75
Identity = 142/286 (49.65%), Postives = 172/286 (60.14%), Query Frame = 1 
Query:    1 VANGDCDLKNNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCVDTPQFVCGDP-----QFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVSTPEYKCGD--TGGFDCIDPDSSC 837
            +A+GDCD  NNNEECGYD GDCC CTC+  + + CG     GFAC+DP A C +DDD  +++++ E NC     GDG CDL NN E C YDGGDCC CTC   P    GD      +   FAC+DP APCV+DDD+T          +  DT G +     DG CDD NNNK+CG+D GDCC CTCV    + CG V F+CVDP A C + DD  +TG+  D  +A        ++NG CD DNN EEC YDGGDCCECTC  +      D  T GFDC DP + C
Sbjct:  184 LADGDCDQINNNEECGYDGGDCCFCTCLD-DFYECG---IRGFACIDPSAECADDDD--VTVDTVE-NCGVRSIGDGQCDLDNNREECHYDGGDCCSCTCQ-VPDDDSGDDGSLCSESTVFACIDPDAPCVNDDDITV---------DMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCVDG-TYECGIVGFDCVDPSAECVD-DDYPSTGVTDDCGNAG------TVANGYCDFDNNKEECAYDGGDCCECTCEPSGLEDGSDSCTSGFDCQDPTAPC 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 2.980e-74
Identity = 138/277 (49.82%), Postives = 164/277 (59.21%), Query Frame = 1 
Query:   46 GYDDGDCCECTCVST--EAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCVDT--PQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTC--VSTEAFT-------CGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVSTPEYKCGDTGGFDCIDPDSSC 837
            G+D GDCCECTCVS   + ++C   +  GFACVDP A CV+DDD  I+IE +  NC    FGDG CD  NNNE CGYDGGDCCECTCV+     + C        AC+DPSAPCVDDDDVT    D      Y  + G   GW     CD+ NNN+ CG+DGGDCCECTC  + T+  T       CG+  F C+DP A C   DD         T    ++C    + NG CD+DNNNE C YDGGDCCECTC   P  +CG   GF CIDP++ C
Sbjct:    5 GFDGGDCCECTCVSVYDDDYSCS-STDSGFACVDPTAPCVDDDD--ITIEQA-LNCFPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCA----ANSACIDPSAPCVDDDDVTV---DMVENCGYVGSVG--NGW-----CDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNG-FACIDPNAPCVNDDDI--------TLDIVENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPC 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.140e-71
Identity = 140/302 (46.36%), Postives = 178/302 (58.94%), Query Frame = 1 
Query:    1 VANGDCDLKNNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCV-AAFFGDGDCDLFNNNEFCGYDGGDCCECTCVDTPQFV-------CGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTE---AFTCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSC-----LGDDISNGVCDLDNNNEECGYDGGDCCECTCV----STPEYKCGDT---GGFDCIDPDSSC 837
            + NG C++ NN EECG+D GDCCECTC   E +TCG     G+AC+DP A CV  DDD ++++  E NC   +  G+G CD   NNE C YDGGDCCECTC D  ++        C    +GGFAC+DP APCVDDD VTA         E  D   C+TG I +G CDDSNN+ +C +DGGDCCECTC S +    + C    F C+DP A C + DD+        TA   + C     +GD    G+CD +NN EECG+DGGDCC+CTCV    +  +Y C +      FDC+D  +SC
Sbjct:   98 IGNGRCNMGNNIEECGFDGGDCCECTCEDGE-YTCGQYY--GYACIDPDATCV--DDDAVTVDMME-NCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTC-DPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTA---------EMMDL--CSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDN--------TAEQYEHCGWVTRIGD----GMCDDENNKEECGFDGGDCCDCTCVVPSSAWSDYACQEVYNINSFDCLDTSASC 369
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 4.910e-65
Identity = 137/298 (45.97%), Postives = 169/298 (56.71%), Query Frame = 1 
Query:    4 ANGDCDLKNNNEECGYDDGDCCECTCVSTEA----FTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCV-------DTPQFV-CGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSC-----LGDDISNGVCDLDNNNEECGYDGGDCCECTCVST--PEYKCG-DTGGFDCIDPDSSC 837
             +G C   NNN ECGYD GDCCECTC + +     + C  ++  GFACVDP A C  +D   +++E+S+  C     GDG CD  NNNE CGYDGGDCCECTC        D   +V CG+    GFAC+DPSAPCV+DDD+T   D++           C+   + DG CD  NNN  C +DGGDCCECTC        G   F C+DPGA C + D        S T    D+C     +G    NG CD +NNNE C YDGGDCCECTC S    +Y C  + G F+C DP++SC
Sbjct:   37 GDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICS-KNGSGFACVDPDAPCYAEDG--VTVEASQ-ECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE----GFACIDPSAPCVNDDDITVDVDES-----------CDAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCG-GRSGFACIDPGAPCVDDD--------SVTVDMIDNCDYLRVMG----NGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASC 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.090e-60
Identity = 131/287 (45.64%), Postives = 159/287 (55.40%), Query Frame = 1 
Query:    1 VANGDCDLKNNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRAACVEDDDDVISIESS--EANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCV----DTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVS--TPEYKCGDTGGFDCIDPDSSC 837
            + +G C  +NNNE C YD GDCCECTCV    + CG  +   FAC+DP AACV+DD+    I  S  +     A  G+G C+  NN E C YD GDCC+CTC     D   F C D     FAC+DP+APCVDDD          T   + D F        DG C+D NNN+ CG+DGGDCCECTCV   +   G   F C+DP A C + DD         TA A ++C+ + + +G CD  NNNE C YDGGDCCECTC S  T      D   F CIDP +SC
Sbjct:   74 IGDGFCSDENNNEVCDYDGGDCCECTCVDA-FYPCGYVA---FACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVD-----FACVDPNAPCVDDD---------VTEGMFEDCFN-----FGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDV--------TADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCECTCGSDSTDVLVGSDCSDFVCIDPTASC 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 8.310e-60
Identity = 140/338 (41.42%), Postives = 178/338 (52.66%), Query Frame = 1 
Query:    4 ANGDCDLKNNNEECGYDDGDCCECTCVST----EAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCV---DTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAF---------------------TCGDVPFECVDPGASCYEGDDDGATGLESDTASA-------------------------TDSC-----LGDDISNGVCDLDNNNEECGYDGGDCCECTCVST--PEYKCGDTGGFDCIDPDSSC 837
             +G C L+NNN ECGYD GDCCECTC +     + + C  +  G FAC+DP A CV+DDD  I+IE ++ NCV +  G+G CD  NNNE CGYD GDCCECTCV   D   + C      GFAC+DP+APCVDDDDVT          +  +  G   G + DG CDD NNN+ CG+DGGDCCECTCV+  A                       CG   F C+DP A+C   DDD   G+++ +                             ++C     +GD    G C+  NNNE C YDGGDCC CTC +    ++ C     F CIDP+++C
Sbjct:   30 GDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYG-FACIDPDAPCVDDDD--ITIEIAQ-NCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSS-DGSGFACIDPAAPCVDDDDVTI---------DMVENCGYVRG-LGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGG-FACIDPNAACVN-DDDITVGMDTPSNKCGWRXXXXXXXXXXXXXXXXXXXXDMIENCEYPWGVGD----GYCNQQNNNELCAYDGGDCCSCTCQNDFDDDWACTT---FACIDPEAAC 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 5.680e-59
Identity = 122/262 (46.56%), Postives = 153/262 (58.40%), Query Frame = 1 
Query:  124 GFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCV-----------DTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAF-------------TCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVSTPEYKCGDTGGFDCIDPDSSC 837
            GFAC+DP A+CV+DDD  I+IE ++ NC  +  GDG CD  NNNE CGYDGGDCCECTCV           D   ++C      GFAC+DP+APCV+DDD+TA         +  +  G   G + DG C + NNN+ CG+DGGDCCECTCV+  A               CG   F C+DP A+C + DD+   G+        +SC    I +G C++DNNNE C YDGGDCCECTC  TP  +CG    F CIDP + C
Sbjct:   30 GFACIDPDASCVDDDD--ITIEMAQ-NCDTSELGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGG-SGFACIDPAAPCVEDDDITA---------DMVENCGYVRG-LGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGG-FACIDPSAACVD-DDEVTVGM-------VESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPC 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 5.510e-56
Identity = 126/286 (44.06%), Postives = 157/286 (54.90%), Query Frame = 1 
Query:   46 GYDDGDCCECTCVST----EAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCV----DTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWI---SDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFT-----------CGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVSTPEYKCGDTGGFDCIDPDSSC 837
            GYD GDCCECTCV+     + + C  + +G FAC+DP A+CV+DDD  I++E ++ NC     GDG CD  NNNE CGYDGGDCCECTCV    D   + C +      AC+DP APCVDDDD+TA       + E         GW+    DG CD+ NNN+ CG+DGGDCCECTC +  A             CG   F C+DP A C   DD         T    +SC   ++ +G CD+ NN E CG     C   +C  TP  KCG   GF CIDP++ C
Sbjct:   20 GYDGGDCCECTCVNPWGDDDDWVCSKDGSG-FACIDPDASCVDDDD--ITVEIAQ-NCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYN----ACIDPDAPCVDDDDITAVM-----VEEC--------GWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGSG-FACIDPNAPCVNDDDI--------TVDVDESCDAVNMGDGYCDISNNIEACGA----CSWLSCTDTPNNKCGRWSGFACIDPEAPC 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.170e-53
Identity = 122/276 (44.20%), Postives = 147/276 (53.26%), Query Frame = 1 
Query:   28 NNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCVDTPQFVCGDPQFG--GFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFE---CVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCV-----STPEYKCGDTGGFDCIDP 825
            NN EEC YD GDCC+CTC   E+    D S   FACVDP A CV+DD      E    +C    FGDG C+ +NNNE CGYDGGDCCECTCV     V    +FG   FAC+DP+APCVDDDDVTA   +            C   ++ DG CD  NN + C +DGGDCCECTC S               C+DP ASC++         E+ T    + C  + + + +C+L NN E C YD GDCCE TC      +  E  C     F CIDP
Sbjct:    5 NNIEECDYDAGDCCQCTC-GIESDDLPDFSCVDFACVDPNAPCVDDD----VTEGMFEDCFN--FGDGFCNDYNNNEQCGYDGGDCCECTCV-----VDWSAEFGCTEFACIDPTAPCVDDDDVTADALE-----------NCMMEYLGDGYCDTYNNIEICDYDGGDCCECTCGSDSTDVLDXXXXXXXXCIDPTASCFD---------ENITVDMYEYCDVELLGDSICNLSNNFEVCDYDFGDCCEATCGVDSSGTLDELSCS---SFACIDP 245
[Close]
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.280e-46
Identity = 107/277 (38.63%), Postives = 138/277 (49.82%), Query Frame = 1 
Query:    1 VANGDCDLKNNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRAACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTCVDTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGCNTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFECVDPGASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGDCCECTCVSTPEYKCGDTGGFDCIDPDS 831
            + NG CD   N   CGYD GDCC CTCV     +C   ST  F C+ P              +   + C   +  DG CDL NN+  C YDGGDCCEC+C+D P + CG     GFACLDP       +     P++TT          C   W++DG CD SNN   C +DGGDCCEC+CV    + CG   F C+DP  +C++        L ++        LG  + +G CD + N   CG+DGGDCC C+C  T    C     FDC DP++
Sbjct:   36 IGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSC---STSDFDCMYP--------------DCGGSECHEDWAKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDYGCGSI---GFACLDPDC----GNTTETAPENTT----------CEESWMNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDP--ACFD------PALVAEFPDCDAGWLG--LGDGFCDSELNTASCGWDGGDCCVCSCNGT---ACS-ISDFDCFDPNA 264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig744.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTT4_9PHAE6.050e-7549.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI2.980e-7449.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI2.140e-7146.36Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI4.910e-6545.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE2.090e-6045.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI8.310e-6041.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.680e-5946.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE5.510e-5644.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI1.170e-5344.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI2.280e-4638.63Polymorphic Outer membrane protein G/I family n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig744contigM-pyrifera_M_contig744:17578..24504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue1.5e-43
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size837
Cds size837
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig744.17614.1prot_M-pyrifera_M_contig744.17614.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig744 17578..24504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.3831458-CDS-M-pyrifera_M_contig744:17577..176811622816642.3831458-CDS-M-pyrifera_M_contig744:17577..17681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 17578..17681 -
1692278094.338524-CDS-M-pyrifera_M_contig744:17577..176811692278094.338524-CDS-M-pyrifera_M_contig744:17577..17681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 17578..17681 -
1622816642.3968709-CDS-M-pyrifera_M_contig744:18934..191591622816642.3968709-CDS-M-pyrifera_M_contig744:18934..19159Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 18935..19159 -
1692278094.351417-CDS-M-pyrifera_M_contig744:18934..191591692278094.351417-CDS-M-pyrifera_M_contig744:18934..19159Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 18935..19159 -
1622816642.409276-CDS-M-pyrifera_M_contig744:21776..220191622816642.409276-CDS-M-pyrifera_M_contig744:21776..22019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 21777..22019 -
1692278094.361206-CDS-M-pyrifera_M_contig744:21776..220191692278094.361206-CDS-M-pyrifera_M_contig744:21776..22019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 21777..22019 -
1622816642.420039-CDS-M-pyrifera_M_contig744:23120..233391622816642.420039-CDS-M-pyrifera_M_contig744:23120..23339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 23121..23339 -
1692278094.370739-CDS-M-pyrifera_M_contig744:23120..233391692278094.370739-CDS-M-pyrifera_M_contig744:23120..23339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 23121..23339 -
1622816642.431544-CDS-M-pyrifera_M_contig744:24458..245041622816642.431544-CDS-M-pyrifera_M_contig744:24458..24504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 24459..24504 -
1692278094.3891308-CDS-M-pyrifera_M_contig744:24458..245041692278094.3891308-CDS-M-pyrifera_M_contig744:24458..24504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig744 24459..24504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig744.17614.1

>prot_M-pyrifera_M_contig744.17614.1 ID=prot_M-pyrifera_M_contig744.17614.1|Name=mRNA_M-pyrifera_M_contig744.17614.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
VANGDCDLKNNNEECGYDDGDCCECTCVSTEAFTCGDESTGGFACVDPRA
ACVEDDDDVISIESSEANCVAAFFGDGDCDLFNNNEFCGYDGGDCCECTC
VDTPQFVCGDPQFGGFACLDPSAPCVDDDDVTAFPDDTTTLSEYTDTFGC
NTGWISDGDCDDSNNNKDCGFDGGDCCECTCVSTEAFTCGDVPFECVDPG
ASCYEGDDDGATGLESDTASATDSCLGDDISNGVCDLDNNNEECGYDGGD
CCECTCVSTPEYKCGDTGGFDCIDPDSSC
back to top

mRNA from alignment at M-pyrifera_M_contig744:17578..24504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig744.17614.1 ID=mRNA_M-pyrifera_M_contig744.17614.1|Name=mRNA_M-pyrifera_M_contig744.17614.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6927bp|location=Sequence derived from alignment at M-pyrifera_M_contig744:17578..24504- (Macrocystis pyrifera P11B4 male)
GTAGCAAATGGTGATTGTGACCTGAAGAACAACAACGAGGAGTGCGGTGC
GTTGCGTGCGAGGACTATCTGTGAACGTGCTGTCGACCCTGTTAAGATAT
CATTGTAAATACTGGTTTCGACTGCATCAATTTCTCTTGGAATCCGTGAC
AGCAGTGGCGTGCGCGATGAATGCCTAGCAATATGATGCCCCTTACTTGC
ATCCAGCAGGAAAAACGGCTATACTACCACCCTAGACGTTTGCTTTTGCT
GGGTTCAACATTATAACAAATCGAAGAAGTAGTAGAAACTGCGCCTCTAG
GTGAATTTGGGCAACAATTCACCATCAAGAACCATAGCGGGTTTCAGGGG
AACTTTGTTCCAAGCAAGATACCGGCCATTACTAGCAGCTCAACCCAGCT
TGCCACAAACATAGCCTAATTCGGATGTCGATGTGCAATTTCATTTTTCC
ATCGTGTAACGTCAGGTTACGACGGTGGCGACTGCTGCGAATGCACCTGC
GTCAGTGCGGACTTCACATGCGGCACCGACAGCGATGGCGGTTTCGCGTG
CCGCGACCCCAACGCCCCATGTGTCGAAGACGACGACGGCATCACCTTCC
TTGAAACGGAGACCTTTATGTCGAGTGCGTCGTCCGAATCAACAAACAGC
TCATCGTCCGGAGCAACAAACAGCTCGTCGCCGTGCGTTCCTGATTTTTT
CGCAGACGGTGACTGCGACCTATTCAACAACATCGAAGAATGCGGTACGT
CGCATCCGAGTACTCGTAAAAGTTTGCGATCGCCGCATAGTAAAGTTCCG
GGAAGCGTTCGGATCCCGTGCTAGTTTTCATTTCTTACTCAGAGAGATGC
CGTTTCTAACGAGCGTCTGGTGATGTGGTGATCCTCGCGGTTGCCCACGA
GGCGCACAACGGACCACCCCCTCTTCCACGCGACCTGCAGCCTTGGTACG
GTACCGGCAATGTGCATGCTCTTACGAGGTTCAGTGTACTACCAGGCACC
CGTTGGACAATGTTGTCTCGTCATGCGCGTGTAAATGGGGCGATAAGTCT
CGACAAAGAATAGACGACCGCATCCAGCTTGTGCCATGTATCCATGATGC
CATTCTGGAAGCATCGCCGGCAATCGACGTCATTGATTAATCGTTGTGTT
TTCGAGCGGTATCAGGTTATGACGATGGCGATTGTTGCGAGTGCACCTGC
GTCAGCACCGAGGCCTTCACCTGCGGCGATGAATCCACCGGCGGATTCGC
GTGCGTCGATCCCCGTGCTGCGTGCGTCGAGGACGACGACGACGTCATCA
GCATCGAATCTTCAGAAGCGAACTGCGTTGCTGCGTTTTTCGGAGACGGA
GACTGCGATCTTTTCAACAACAACGAATTTTGCGGTGCGTCGCATTCGGG
AACGAAGTTCGAATCAGACGTCACTTCTGTGCATATTTCGTGTCGCAAAC
AAATACACCCTGTACCTAGTCTGGTGGTACCCTACGACAGTGATGTGGCG
GACACGTGTCTGGCTATACGACGCTACATAGCCGTAGGCAGTTGGCAAAG
CTAACACCCCCCCACCGCTGCCCCTGGTCCGGTCATTCTGCCAACCATAC
ACTCACTCGTGTCGACCCGGGAGCAGAGACATAACGGGCGAAATGATGCA
CGGCTATATTACGCGCAACATAAGCCTAGCGTGGCCAACGTGTGCTACGT
ACATGACAACTGTGACGTGCGAAACTAGCTACGTGTTGCGGCGAACTTTA
TGGTATACAAATAGGCTAATCATGTATCAAAATGTTTCGATCGCTCTCAG
GTTACGACGGTGGCGATTGCTGCCTGTGCACCTGTGAGAGCACCTTGGAA
TTCACGTGTGGTGACGAAAGCCATGGTGGTTTCGCGTGCATCGACCCCAG
TGCTACGTGCGTTGATGACGACGGTTTTACCGTGAATCCAAGCTTTGAGG
AAACTACTTACTTCGGATCAACGACGTCGACGTTAGGTTGCATTCCTGAT
TATTTCTCCGACGGACTATGTGACCTGATCAACGACAACGAGGCCTGCGG
TACGTCAATATTCGTTGACGAATATTGAATGGAAAAGCTATCTCTACATG
GCTTCGTCCCGTACAGGGCCCCGTTCCGTGCTTTTTACTTTTCGTGCCGA
GGGCATTGAGGTCCATACATGGTGGTTTGGGACTCGGTGCATATTCCCAT
TTTCATGAAGGGAAGCCCACAAACCCTGTTTTTCCCCTAGCCTGTGGTTT
CTGCTGAGCTCGCCTTTATCAGCGTTTCGACCTTGTCTTATCGGTTGAAC
AGCTTGGGGAGTTACGCGCGTCTTGCCTACATGAAGTTGCCCTGTTCTAC
CATTTGCCATAGGTGCTTAGCCTCCATATATTCCACCCAAAAATAGTCTG
CCGTGGTCCGCATGAAAATCTCACGTTGTCCTTGCACTGCCGGCAACTGA
TATCGATATATGGCCATGCTGCCCAATGGGTTCAGGTTACGACGGTGGTG
ATTGCTGCGAATGCACCTGCGTCGACACGCCGCAATTCGTGTGCGGGGAC
CCACAGTTCGGCGGTTTCGCGTGCCTCGATCCCAGTGCTCCTTGTGTCGA
TGACGATGACGTGACTGCTTTTCCGGACGACACCACCACGCTCTCGGAAT
ATACCGATACCTTTGGATGTAATACTGGATGGATCTCAGACGGAGACTGT
GACGACAGCAACAATAATAAAGACTGCGGTGCGTCGCAAACGGGTACCTG
AGCAAATATTTACGGTTTTCAGTCGTTGCGTGGCATCTGCCCTTGAAGCG
CAAAGTCCGTGCTTGATAAGAATGCATTTAGTTCGTGAAGGTACCTCGCC
AAACGACCGCCTGGTGATGCGATCTTCTTACCGGTGCTAAGTAGGTGAAG
AAAAATGCATGCCATTTCCAGCTAACTGTAGCCTACCTACGCTGTAGGCC
TTGCAGATACTATCATGAGGTTGAAACCAAACCCAGGCACTAGTTTATCT
ATGCGATATGCCAAGCTGAGGTAAAGGTAACGGGCCAGGGATCCACGGTG
TGGCCGTCGTTGCCCAAGAATGCCTGAGACCACTCTGGATGAAACGTTAT
TTTAGGATATAGATGTATCGTCACTAAACCGCCGATCTGCCGACGTCGTT
GATTCGACGTTGTGGTGCCGAACGCCATCAGGTTTCGACGGCGGAGATTG
CTGCGAATGCACCTGCGAAGACACCATGTCCTTTACTTGCGGCGATGCCT
CTCACGGTGGTTTCGACTGCATTGACCCCGATGCTCCGTGCCTCGGCGAA
GACGACGACATTATCCTTCTCCCGACATCTGATGACGATTTCACGGACAC
AGAAATGACCACGGAATCAGGTTGTGTTCCCGACTACTTTTCCGACGGAA
TATGCGACTTCATCAACAACGACGCTGTCTGCGGTGGGTCGAGTTCGTTG
GCTAACAGTGAATACCATCGACCGTCTTTACGTGGTGTCGTCCTGTTTGC
ATCCCTATTCCGTGCCTGATGTCTATCTTCCCCAGTGCGGTGGCGTTCGA
AAAGAGCGCAGTGAGGCTCGACCCACCCTAGATGTCTGCAGCGAGCCACT
GTTTCACACACTGTTTTCCCCTAGCCTATGTTTGCGGCAGCATTCGCCAT
TGCCATCGTTCCGCTGTATATGATACCAGTGCCACAGCGTTCTAGGTAAT
GCCACGAACACTTCGAGTGAGAGTACCCGACCAATCACCGTACGTGCGCG
GCCCGCACATATCCCAGTCTTGAATACTGTCAGTCGGCATGAAACTAACA
CCATCATCGAACTGCTGGCACTCGATCGTCGTTGTATTGTCCTGCGTTTC
AATGAAATCAGGTTTTGACGGCGGCGATTGCTGCGAATGCACTTGTGTGG
ACTCCGACGACTTCACCTGTGGTGACGAAGAGTTCGGTACTTTCGATTGC
ATCGATCCCAGTGCTCCTCTTCCTCCTTGCCTCGGCCAAGACGACGACGA
CTCACCATGTCAGCCTGCTCTGTCCGCGAACGGAGAATGCAACGTTGAGA
ACAACGACGAAGCCTGCGGTGGGTCGCATTCGCCTATTAATTCGTCAATG
GAATGATGGTCTCTAGGTAGTGTCTTCCCGTCAAAGTCCAGAATCCGTGC
TTGTTGCGTTGGTGCTGGGTACCCTGTTGTCCGAACATCGTGTCGTCGGG
CTCGATGCACTGCGCCTGTCTTCAGCGAGCGAAACTAGCACACTCTGCCT
ACCCCACAGCCCATGTTTCCGGCTGATCTCGAGTTTTCCGTTTTTCCGTT
GGGCTTACCGCCAGTTGGATGCGTTCTTATGAGCAATGCGACGGTCGAGT
TGTTGCCTTGTGGGTTGAGCTCCATACACGCGGAGCTCAATGTCGTACCC
TGAAACATGTCGCCGAACAAGTTTGTTCGGGAAATCCGGCAATACGTTGA
ATCAGATATCCTGACACTAACGTTGTATGTCACTAACTGGTAGATGATCA
CGTGGAGAGCTCAACCGGCCAGGCAATACTGAGCCAAAAGTGCAACCCAT
ACTGCGGGAGGAGTGTTATGAAATGGGCGTATAGAAAGAGTGAGAACGCT
GCACCGAGCACGATATGTGCGAAGCCCGCATATGTCGTAAGTACAGGTTG
TCTGTGACGCTCCGCATACAAGGAACATTGTCATCGCATTGCTGACCACC
GACGCTGCTGCTGTATGTTCATGCCATCTAACGGAATCAGGTTTCGATGG
TGGCGATTGCTGCGAGTGCACCTGCGTCAGCACTGAGGAATACACTTGCG
GGGACGAAGCATTCGAATGTGTCGATCCCAGCGCTTCTTGCTATGAGGGG
GACGACGACGGGCCGTGCGATCCCGAACTTGTCTCGGACGGAGTATGCGA
CTTTGTGAACAACGACGAAATCTGCGGTGGGTCTTGTTCGCTTATAAAGC
GTAAATGGAATATAGTATACTGTATCTATATGGTGTCGTCCAGCGAACGT
CCTATTCCGTGCTTAATACCTCTTTTCCCACTACGGTGGCGTCTTGGGGC
TCAATGTAACATTCCCGTCTCAGCCAGTGTAACTGACACATTCTGTCTTC
TTCTGGCCTGCGTTGACAGGTGAGTTGGCCTCACCGACCGTTTGTTGGGC
GTCGTACTCGTGTGACGGCTTGGTAGGTGACCCGTGCTCAGATAGAGGGA
CAATGTCCGGCTGAAGACGATACGTGCGTGGCCCGCATACATCGCAGGTA
TTCGTGTTCGGTCGAGGTGTATTCAACCGATATTGTCGACGCACTGCTAA
CCACTGACGTCATTGTTGTATGATGGTGTTGTCTAACGAGATCAGGTTTC
GACGGGGGCGATTGCTGCGAATGCACCTGCGTCAGTACCGAGGCGTTCAC
GTGCGGGGATGTACCGTTCGAATGTGTCGATCCCGGTGCTTCTTGTTATG
AGGGGGACGACGACGGCGCTACAGGTCTCGAATCAGACACGGCCTCCGCA
ACCGACTCCTGTCTCGGTGATGATATCTCCAACGGTGTCTGCGACCTTGA
CAACAACAACGAAGAATGCGGTGAGACAAGGGCACCGCGCGTGATACGAT
AGAAGTAGTTTTTTTTCCGGCCCGAGTATTTCTGGCGGACGGGGTTCCTG
AATCGTCAGACTACCTAACGTCGTTGATCTCACATTTTTCTACTTGTTGG
TGAGTGATACCAATCATATGCCACGGTTAAGTGCCCGGGGTTCCTCGAAC
GTTTCGTATTAAGAGAAACACAGAGTTCCCCATGTCAGCAGCCGTTGAAA
CGTTAGGTGATACCTCTACCATAGCGCACGCCTCCACTAGTTTATGATTT
GGCACGATGCCTCTCCCTGTGCCGACCGGGGTTCGTTGACAGCGAGACAC
CTGTAATTAGCTGCCCTTCATGCGTAAACCGCTAACGTATAGCAACTAGA
GGTTGGCCCGTCTCGCTTACTTCACTGTTGCATCTGCACATTGCCGGGAC
TTGGTTGTCACGTTGTCACGCATAAAGTTTGTCGTGGATCAATGCGGTTG
ATATTGTTTGTCAAGATTTATCGATATTTGTCCAATCGAGCATCACGGGT
TGGTTCGTATTTTATGGCACGTGTGTTCTTGCGTTGACGCGGCCAAGTGA
GAGTGTCATATGGCCACGACGACGCTGACGTCTGCGGAGACAGTTGTTTT
TTGGACGTCCGAACCACGACATGCATGTGTGTTACGCGCGAAGGTTTCTA
GTTTGCGCAGGTTGATCTCGTCGCCCGTGCGTCGCGAAACACGAGCATCA
TTTTTTGTATTTCTCGAGCATTAGACCTGGTATAGACGGTCAGTCATCGA
GAAATCTTGAACATACATTCACTGTGTGTCCCGGACGATTTTCGTTATTA
GTGAACAGAGAAATGTGTTTCGTACAGTGTAAGAGCATGAGTAGGTATCA
TGTGGGCGGAGTATGGCGGCATGACCTCGTAGGACGCTTTCCCTTTGGGC
CGCCTGGCTTGAGTGACGGCCGTCTCTAGAATTTTGGCTTTTGACGCACA
AACGAGTCAACGGTGACACAAACCTCCTACCCAACGCACCACACGTTCGC
CTTATTTCGTACGTTTCAACCGACGCCGGTGAAAACATCCTCTCCTATGG
TTGTGTTAAGTTCTTCTTGAAAAGGTAACACAGAGAATAGGTCAAGAATT
TGCGCGGGCCGTCTGTCCGTATTCAATCAAAACGCTAGTACCCTGTCACA
CTGCACACGTACGGAGCACAAAGAAGCCCCGGTTTATCTGAGTGCACGCC
TCATATGGCACTAATGTTGTCAGGTTACGACGGGGGCGATTGCTGCGAAT
GCACCTGTGTCAGTACTCCGGAATACAAATGCGGCGACACCGGTGGCTTC
GACTGCATCGACCCGGACTCGTCTTGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig744:17578..24504-

>mRNA_M-pyrifera_M_contig744.17614.1 ID=mRNA_M-pyrifera_M_contig744.17614.1|Name=mRNA_M-pyrifera_M_contig744.17614.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig744:17578..24504- (Macrocystis pyrifera P11B4 male)
GTAGCAAATGGTGATTGTGACCTGAAGAACAACAACGAGGAGTGCGGTAG
CAAATGGTGATTGTGACCTGAAGAACAACAACGAGGAGTGCGGTTATGAC
GATGGCGATTGTTGCGAGTGCACCTGCGTCAGCACCGAGGCCTTCACCTG
CGGCGATGAATCCACCGGCGGATTCGCGTGCGTCGATCCCCGTGCTGCGT
GCGTCGAGGACGACGACGACGTCATCAGCATCGAATCTTCAGAAGCGAAC
TGCGTTGCTGCGTTTTTCGGAGACGGAGACTGCGATCTTTTCAACAACAA
CGAATTTTGCGGTTATGACGATGGCGATTGTTGCGAGTGCACCTGCGTCA
GCACCGAGGCCTTCACCTGCGGCGATGAATCCACCGGCGGATTCGCGTGC
GTCGATCCCCGTGCTGCGTGCGTCGAGGACGACGACGACGTCATCAGCAT
CGAATCTTCAGAAGCGAACTGCGTTGCTGCGTTTTTCGGAGACGGAGACT
GCGATCTTTTCAACAACAACGAATTTTGCGGTTACGACGGTGGTGATTGC
TGCGAATGCACCTGCGTCGACACGCCGCAATTCGTGTGCGGGGACCCACA
GTTCGGCGGTTTCGCGTGCCTCGATCCCAGTGCTCCTTGTGTCGATGACG
ATGACGTGACTGCTTTTCCGGACGACACCACCACGCTCTCGGAATATACC
GATACCTTTGGATGTAATACTGGATGGATCTCAGACGGAGACTGTGACGA
CAGCAACAATAATAAAGACTGCGGTTACGACGGTGGTGATTGCTGCGAAT
GCACCTGCGTCGACACGCCGCAATTCGTGTGCGGGGACCCACAGTTCGGC
GGTTTCGCGTGCCTCGATCCCAGTGCTCCTTGTGTCGATGACGATGACGT
GACTGCTTTTCCGGACGACACCACCACGCTCTCGGAATATACCGATACCT
TTGGATGTAATACTGGATGGATCTCAGACGGAGACTGTGACGACAGCAAC
AATAATAAAGACTGCGGTTTCGACGGGGGCGATTGCTGCGAATGCACCTG
CGTCAGTACCGAGGCGTTCACGTGCGGGGATGTACCGTTCGAATGTGTCG
ATCCCGGTGCTTCTTGTTATGAGGGGGACGACGACGGCGCTACAGGTCTC
GAATCAGACACGGCCTCCGCAACCGACTCCTGTCTCGGTGATGATATCTC
CAACGGTGTCTGCGACCTTGACAACAACAACGAAGAATGCGGTTTCGACG
GGGGCGATTGCTGCGAATGCACCTGCGTCAGTACCGAGGCGTTCACGTGC
GGGGATGTACCGTTCGAATGTGTCGATCCCGGTGCTTCTTGTTATGAGGG
GGACGACGACGGCGCTACAGGTCTCGAATCAGACACGGCCTCCGCAACCG
ACTCCTGTCTCGGTGATGATATCTCCAACGGTGTCTGCGACCTTGACAAC
AACAACGAAGAATGCGGTTACGACGGGGGCGATTGCTGCGAATGCACCTG
TGTCAGTACTCCGGAATACAAATGCGGCGACACCGGTGGCTTCGACTGCA
TCGACCCGGACTCGTCTTGTGTTACGACGGGGGCGATTGCTGCGAATGCA
CCTGTGTCAGTACTCCGGAATACAAATGCGGCGACACCGGTGGCTTCGAC
TGCATCGACCCGGACTCGTCTTGT
back to top