mRNA_M-pyrifera_M_contig74386.17612.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A6I1I6A5_9BURK (Autotransporter domain-containing protein n=1 Tax=Janthinobacterium violaceinigrum TaxID=2654252 RepID=A0A6I1I6A5_9BURK) HSP 1 Score: 84.7 bits (208), Expect = 6.320e-15 Identity = 73/223 (32.74%), Postives = 101/223 (45.29%), Query Frame = 1 Query: 10 ADVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAPSVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRL--FSY-DRPFVLDISPSYAFTGPDIEEDFV-LYGENFGASILADGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGPPVITTISPTK--ASAGDTILILGSNF 660 AD + P++S ISPTSGP G ++T+SG+N V G AA T S T++ PPG G +DV + T GG+S + F+Y P V ISP+ +GP V + G NF + ++A V GG F + QI GT + V G F VG PV+++ISPT A+ G T+ I G+NF Sbjct: 992 ADQFTYVAAPVVSSISPTSGPAAGGSTVTISGTNFSG----ATAVTFGGAAASGFTVNSATQITATAPPGVGT-VDVRVTTAGGTSATGAADQFTYIAAPVVSSISPT---SGPATGGTTVTISGTNF-SGLMA---------VTFGGTAATAFTFNSATQITATAPAGTGTVDVRVTTSGGTSATGAADQFTYVGAPVVSSISPTAGPAAGGTTVTISGTNF 1196
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A7W1VWH1_9BACT (IPT/TIG domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VWH1_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 8.450e-11 Identity = 70/212 (33.02%), Postives = 97/212 (45.75%), Query Frame = 1 Query: 37 PLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAPSVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEEDFV-LYGENFGASILADGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGPPVITTISPT--KASAGDTILILGSNFG 663 P + FIS T+GPT G ++ITV+G+N G VL G +VT S T + F LPPG G+ L + + G SS FSY P + +P+ GP V L G +FG S V G C+ L + QI G + N + + VAG + RLF PPV+ +I+P +S G + + G NFG Sbjct: 193 PSIHFISHTTGPTTGGITITVNGNNFGTNSTIVL-----GDTPCNVTFNSHTSISFTLPPGQGSNLSLVMNASGQSSTLVGAFSYTAPNITSHTPN---NGPTAGGTTVYLSGTDFGISPN----------VTFNGQPCDILSSSHT-QIAFVTPPG-QGLNQVIRVNVAGQLSN-VRLFS-YDPPVLNSINPAGGPSSGGTLVTLSGGNFG 382
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A8C5BHH4_GADMO (Plexin b1a n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BHH4_GADMO) HSP 1 Score: 70.1 bits (170), Expect = 5.550e-10 Identity = 72/233 (30.90%), Postives = 99/233 (42.49%), Query Frame = 1 Query: 13 DVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLG-VFVNGVAAPSVTPKSRTELEFLL---PPGAGAQLDVNIVTI---GGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILA-------DGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGP-PVITTISPTKA--SAGDTILILGSNF 660 +V P++ FI P SGP +G +T+SGSNLG KP++V V V GV P SR E+ + G+GA+ V GG S +FS+ P + +SP L G G S L G AG+V V IGGV C L +D QINC + + ++ G + P P IT +P+K+ G TI + G N Sbjct: 767 EVTHTCPAPVIHFIDPVSGPVEGGTVVTISGSNLGQKPEDVENSVTVAGV--PCHVIPSRYEVSSRIVCETTGSGAEKSGQAVVSVRGGGHGRSTHVFSFQDPILTSVSP--------------LRGPKAGGSRLRIRGHRLRTGHAGEVS-VAIGGVPCLVLT-IDDDQINCQSGSSNRTGDHGITVRFGGTERHLQGITYHYTPNPNITRAAPSKSFLRGGRTIRVSGHNL 981
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A8C5A6F7_GADMO (Plexin b1a n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5A6F7_GADMO) HSP 1 Score: 70.1 bits (170), Expect = 5.600e-10 Identity = 72/233 (30.90%), Postives = 99/233 (42.49%), Query Frame = 1 Query: 13 DVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLG-VFVNGVAAPSVTPKSRTELEFLL---PPGAGAQLDVNIVTI---GGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILA-------DGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGP-PVITTISPTKA--SAGDTILILGSNF 660 +V P++ FI P SGP +G +T+SGSNLG KP++V V V GV P SR E+ + G+GA+ V GG S +FS+ P + +SP L G G S L G AG+V V IGGV C L +D QINC + + ++ G + P P IT +P+K+ G TI + G N Sbjct: 930 EVTHTCPAPVIHFIDPVSGPVEGGTVVTISGSNLGQKPEDVENSVTVAGV--PCHVIPSRYEVSSRIVCETTGSGAEKSGQAVVSVRGGGHGRSTHVFSFQDPILTSVSP--------------LRGPKAGGSRLRIRGHRLRTGHAGEVS-VAIGGVPCLVLT-IDDDQINCQSGSSNRTGDHGITVRFGGTERHLQGITYHYTPNPNITRAAPSKSFLRGGRTIRVSGHNL 1144
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A8C5CT73_GADMO (Plexin b1a n=4 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5CT73_GADMO) HSP 1 Score: 70.1 bits (170), Expect = 5.610e-10 Identity = 72/233 (30.90%), Postives = 99/233 (42.49%), Query Frame = 1 Query: 13 DVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLG-VFVNGVAAPSVTPKSRTELEFLL---PPGAGAQLDVNIVTI---GGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILA-------DGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGP-PVITTISPTKA--SAGDTILILGSNF 660 +V P++ FI P SGP +G +T+SGSNLG KP++V V V GV P SR E+ + G+GA+ V GG S +FS+ P + +SP L G G S L G AG+V V IGGV C L +D QINC + + ++ G + P P IT +P+K+ G TI + G N Sbjct: 1132 EVTHTCPAPVIHFIDPVSGPVEGGTVVTISGSNLGQKPEDVENSVTVAGV--PCHVIPSRYEVSSRIVCETTGSGAEKSGQAVVSVRGGGHGRSTHVFSFQDPILTSVSP--------------LRGPKAGGSRLRIRGHRLRTGHAGEVS-VAIGGVPCLVLT-IDDDQINCQSGSSNRTGDHGITVRFGGTERHLQGITYHYTPNPNITRAAPSKSFLRGGRTIRVSGHNL 1346
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A8C5B2F9_GADMO (Plexin b1a n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5B2F9_GADMO) HSP 1 Score: 70.1 bits (170), Expect = 5.640e-10 Identity = 72/233 (30.90%), Postives = 99/233 (42.49%), Query Frame = 1 Query: 13 DVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLG-VFVNGVAAPSVTPKSRTELEFLL---PPGAGAQLDVNIVTI---GGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILA-------DGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGP-PVITTISPTKA--SAGDTILILGSNF 660 +V P++ FI P SGP +G +T+SGSNLG KP++V V V GV P SR E+ + G+GA+ V GG S +FS+ P + +SP L G G S L G AG+V V IGGV C L +D QINC + + ++ G + P P IT +P+K+ G TI + G N Sbjct: 1132 EVTHTCPAPVIHFIDPVSGPVEGGTVVTISGSNLGQKPEDVENSVTVAGV--PCHVIPSRYEVSSRIVCETTGSGAEKSGQAVVSVRGGGHGRSTHVFSFQDPILTSVSP--------------LRGPKAGGSRLRIRGHRLRTGHAGEVS-VAIGGVPCLVLT-IDDDQINCQSGSSNRTGDHGITVRFGGTERHLQGITYHYTPNPNITRAAPSKSFLRGGRTIRVSGHNL 1346
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A7K4Y911_BUCAB (PLXB2 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K4Y911_BUCAB) HSP 1 Score: 68.6 bits (166), Expect = 1.740e-9 Identity = 66/218 (30.28%), Postives = 96/218 (44.04%), Query Frame = 1 Query: 37 PLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAP------SVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRLFSYDRPFVLDISPSYAFTGPDIEED-FVLYGENFGASILADGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGPPVITTISPTKA--SAGDTILILGSNFG 663 P ++ I P +GP G + +T+ GSNLG K ++V V V A SV+ + ++ + P G Q++VNI G SPS LF+Y +P+ I P +GP + G N LA GS DV V +G C EF D +I C ++ E +V + G F P +T P + S G I + G+ FG Sbjct: 221 PEITRIEPKTGPLSGGILLTIMGSNLGIKAEDVKNVMVADKACLFKEEYYSVSTRIVCQVGPMYEPKQG-QIEVNINGKLGKSPSEVLFTYQKPYPSGIKPE---SGPQAGGTALTITGTN-----LATGSKKDVQ-VSVGSQPCNVTEFGD--EIVCITGPNSKVETVDVTVDYGGTAISVPANFSYSENPTVTKFLPVNSFSSGGRNITVTGTGFG 426
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A2N3BLS6_9PROT (Transporter (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-6 TaxID=2013669 RepID=A0A2N3BLS6_9PROT) HSP 1 Score: 66.2 bits (160), Expect = 8.160e-9 Identity = 60/222 (27.03%), Postives = 90/222 (40.54%), Query Frame = 1 Query: 4 TRADVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAPSVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRLFSY-DRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILADGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGPPVITTISPTKA--SAGDTILILGSNF 660 T + + I P ++ ISPTSGPT G S+T++G+N V V G AA +T + T + + P G DV + T GGS + L++Y P V +SP Y T + G +F V + V+ IN GT + G G L+ + P +T ISPT + G ++ I G++F Sbjct: 101 TGSGLYTYIAAPTVTAISPTSGPTAGGTSVTITGTNFTG----ATSVTVGGAAASGITVVNPTTITAVTPAGTAGARDVIVTTPGGSGTGSGLYTYVAAPTVTGVSPGYGSTAGGTS--VTITGTSFTXXXXXXXXXXXXXXVTV----------VNPTTINAVTPAGTAGARDVIVTTPGGSGTG-SGLYTYIAAPTVTAISPTNGPTAGGTSVTITGTSF 305
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: A0A2N2ACK7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 TaxID=2013791 RepID=A0A2N2ACK7_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 1.040e-8 Identity = 60/222 (27.03%), Postives = 90/222 (40.54%), Query Frame = 1 Query: 4 TRADVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAPSVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRLFSY-DRPFVLDISPSYAFTGPDIEEDFVLYGENFGASILADGSAGDVDWVEIGGVRCETLEFVDSGQINCGGVDGTEWENSNVNLQVAGVRAGPFRLFDPVGPPVITTISPTKA--SAGDTILILGSNF 660 T + + I P ++ ISPTSGPT G S+T++G+N V V G AA +T + T + + P G DV + T GGS + L++Y P V +SP Y T + G +F V + V+ IN GT + G G L+ + P +T ISPT + G ++ I G++F Sbjct: 100 TGSGLYTYIAAPTVTAISPTSGPTAGGTSVTITGTNFTG----ATSVTVGGAAASGITVVNPTTITAVTPAGTAGARDVIVTTPGGSGTGSGLYTYVAAPTVTGVSPGYGSTAGGTS--VTITGTSFTXXXXXXXXXXXXXXVTV----------VNPTTINAVTPAGTAGARDVIVTTPGGSGTG-SGLYTYIAAPTVTAISPTNGPTAGGTSVTITGTSF 304
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Match: UPI000F794183 (IPT/TIG domain-containing protein n=2 Tax=Paenibacillus baekrokdamisoli TaxID=1712516 RepID=UPI000F794183) HSP 1 Score: 65.1 bits (157), Expect = 2.630e-8 Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 37 PLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVNGVAAPSVTPKSRTELEFLLPPGAGAQLDVNIVTIGGSSPSNRLFSYD---RPFVLDISPS 324 P +S ISPTSGPT G ++T++GSNL + V + A S T S T++ + PPG+ +DV + T+GG+S ++ Y P + ISP+ Sbjct: 40 PAISSISPTSGPTSGGTTVTLTGSNLFG----TMAVTFDATEATSFTVDSATQITAIAPPGSAGTVDVRVTTLGGTSATSAADQYTFIAAPTITSISPT 134 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74386.17612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74386.17612.1 >prot_M-pyrifera_M_contig74386.17612.1 ID=prot_M-pyrifera_M_contig74386.17612.1|Name=mRNA_M-pyrifera_M_contig74386.17612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp MTRADVLEVIGRPLLSFISPTSGPTDGNVSITVSGSNLGNKPDEVLGVFVback to top mRNA from alignment at M-pyrifera_M_contig74386:223..984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig74386.17612.1 ID=mRNA_M-pyrifera_M_contig74386.17612.1|Name=mRNA_M-pyrifera_M_contig74386.17612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig74386:223..984+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig74386:223..984+ >mRNA_M-pyrifera_M_contig74386.17612.1 ID=mRNA_M-pyrifera_M_contig74386.17612.1|Name=mRNA_M-pyrifera_M_contig74386.17612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig74386:223..984+ (Macrocystis pyrifera P11B4 male)back to top |