mRNA_M-pyrifera_M_contig74385.17611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74385.17611.1
Unique NamemRNA_M-pyrifera_M_contig74385.17611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A7S1CEG3_9STRA (Nicotinate phosphoribosyltransferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEG3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-21
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 DAPGWRYAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            D  G     P+L +++E+VK Q+  LREDHLR +NPTPYKVSVS ELY F+H LW +EVP+PE+ 
Sbjct:   50 DTTGLTVRLPSLTELKEFVKAQLALLREDHLRHMNPTPYKVSVSPELYHFIHDLWMREVPIPELE 114          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: UPI0008707FE7 (nicotinate phosphoribosyltransferase 2-like n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI0008707FE7)

HSP 1 Score: 83.6 bits (205), Expect = 2.390e-19
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 GDAPGWRYAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            G   G R   P L+DIRE    Q+K +R DH+R LNPTPYKVSVSAELYDF+H LW  E PV E+ 
Sbjct:   44 GSPGGAREDLPPLKDIRERCITQLKKMRPDHMRRLNPTPYKVSVSAELYDFIHFLWLNEAPVGELQ 109          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A5A8D4E4_CAFRO (Nicotinate phosphoribosyltransferase n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8D4E4_CAFRO)

HSP 1 Score: 86.7 bits (213), Expect = 2.730e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 GDAPGWRYAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            G A G R  FP   ++R YV+ Q+  LREDH+R LNPTPYKVSV+A LY F+H LW++EVP+ E++
Sbjct:  559 GAALGHRVRFPTPTEVRSYVRAQLSILREDHVRPLNPTPYKVSVTAGLYHFIHELWSREVPIAELA 624          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A0R0K983_SOYBN (Nicotinate phosphoribosyltransferase n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0K983_SOYBN)

HSP 1 Score: 80.1 bits (196), Expect = 2.790e-18
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 FPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
             PAL DIRE    Q++ +R DH+R LNPTPYKVSVSA+LYDF+H LW  E PV E+ 
Sbjct:   27 LPALRDIREQCINQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 83          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A0B2P2I4_GLYSO (Nicotinate phosphoribosyltransferase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2P2I4_GLYSO)

HSP 1 Score: 80.1 bits (196), Expect = 7.420e-18
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 FPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
             PAL DIRE    Q++ +R DH+R LNPTPYKVSVSA+LYDF+H LW  E PV E+ 
Sbjct:   24 LPALRDIREQCINQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 80          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A445IJ53_GLYSO (Nicotinate phosphoribosyltransferase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IJ53_GLYSO)

HSP 1 Score: 80.5 bits (197), Expect = 1.220e-17
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   25 AFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            + PAL DIRE    Q++ +R DH+R LNPTPYKVSVSA+LYDF+H LW  E PV E+ 
Sbjct:   97 SLPALRDIRERCINQLEQMRSDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 154          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: L8HGS5_ACACA (Nicotinate phosphoribosyltransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGS5_ACACA)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   28 FPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            FP +E ++ YV  Q++ +R DHLR LNPTPYKVSVS+ELY F+H LW +E P+P++S
Sbjct:  565 FPTMESLKAYVTGQLQEMRPDHLRLLNPTPYKVSVSSELYSFIHDLWLQEAPIPDIS 621          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A7C6DN90_9CHLR (Nicotinate phosphoribosyltransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6DN90_9CHLR)

HSP 1 Score: 80.9 bits (198), Expect = 2.000e-17
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   28 FPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
             P++E++R  V  QI   REDH RALNPTPYKVSVSA LY+F+H LW +E P+ E+S
Sbjct:  136 LPSMEEVRRRVFDQIAATREDHRRALNPTPYKVSVSATLYEFIHGLWLQEAPITEIS 192          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A3A5ACL1_9DELT (Nicotinate phosphoribosyltransferase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A5ACL1_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 2.410e-17
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   22 YAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            YAFP L+ IR+YV+ QI  +R DH+RA+NPTPYKVSVS ELY  +H LW +E P+ E++
Sbjct:  527 YAFPPLDAIRQYVQDQIAAMRPDHMRAVNPTPYKVSVSEELYRSMHELWMQEAPISEIA 585          
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Match: A0A804MG42_MAIZE (Nicotinate phosphoribosyltransferase n=2 Tax=Zea mays TaxID=4577 RepID=A0A804MG42_MAIZE)

HSP 1 Score: 80.5 bits (197), Expect = 3.130e-17
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   19 RYAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYDFVHSLWAKEVPVPEVS 198
            R   P+LE IR    QQ++ LR DH+R LNPTPYKVSVSA+LYDF+H LW  E PV E+ 
Sbjct:  138 RAELPSLEKIRSRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYDFIHCLWLNEAPVGELQ 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74385.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CEG3_9STRA2.900e-2156.92Nicotinate phosphoribosyltransferase n=1 Tax=Bicos... [more]
UPI0008707FE72.390e-1959.09nicotinate phosphoribosyltransferase 2-like n=1 Ta... [more]
A0A5A8D4E4_CAFRO2.730e-1856.06Nicotinate phosphoribosyltransferase n=6 Tax=Sar T... [more]
A0A0R0K983_SOYBN2.790e-1861.40Nicotinate phosphoribosyltransferase n=1 Tax=Glyci... [more]
A0A0B2P2I4_GLYSO7.420e-1861.40Nicotinate phosphoribosyltransferase n=1 Tax=Glyci... [more]
A0A445IJ53_GLYSO1.220e-1760.34Nicotinate phosphoribosyltransferase n=1 Tax=Glyci... [more]
L8HGS5_ACACA1.300e-1757.89Nicotinate phosphoribosyltransferase n=1 Tax=Acant... [more]
A0A7C6DN90_9CHLR2.000e-1759.65Nicotinate phosphoribosyltransferase n=1 Tax=Chlor... [more]
A0A3A5ACL1_9DELT2.410e-1759.32Nicotinate phosphoribosyltransferase n=1 Tax=Desul... [more]
A0A804MG42_MAIZE3.130e-1760.00Nicotinate phosphoribosyltransferase n=2 Tax=Zea m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74385contigM-pyrifera_M_contig74385:110..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.8
Seed ortholog evalue6.7e-14
Seed eggNOG ortholog77586.LPERR04G09570.1
KEGG rclassRC00033
KEGG koko:K00763
KEGG ReactionR01724
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0016874,GO:0016879,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.nicotinate
EggNOG OGs37NGR@33090,3GAPU@35493,3I8JA@38820,3KUSM@4447,COG1488@1,KOG2511@2759
EC6.3.4.21
COG Functional cat.H
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.279998-CDS-M-pyrifera_M_contig74385:109..3101622816642.279998-CDS-M-pyrifera_M_contig74385:109..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74385 110..310 +
1692278094.283111-CDS-M-pyrifera_M_contig74385:109..3101692278094.283111-CDS-M-pyrifera_M_contig74385:109..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74385 110..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74385.17611.1prot_M-pyrifera_M_contig74385.17611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74385 110..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74385.17611.1

>prot_M-pyrifera_M_contig74385.17611.1 ID=prot_M-pyrifera_M_contig74385.17611.1|Name=mRNA_M-pyrifera_M_contig74385.17611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
GDAPGWRYAFPALEDIREYVKQQIKTLREDHLRALNPTPYKVSVSAELYD
FVHSLWAKEVPVPEVS*
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mRNA from alignment at M-pyrifera_M_contig74385:110..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74385.17611.1 ID=mRNA_M-pyrifera_M_contig74385.17611.1|Name=mRNA_M-pyrifera_M_contig74385.17611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig74385:110..310+ (Macrocystis pyrifera P11B4 male)
GGAGACGCGCCCGGGTGGAGGTACGCCTTCCCGGCGCTGGAGGACATCAG GGAGTACGTCAAGCAGCAAATCAAAACCCTCCGAGAAGACCACCTCCGCG CCCTCAACCCAACGCCATACAAGGTCTCCGTCTCCGCAGAACTCTACGAC TTTGTGCACTCCCTCTGGGCCAAAGAGGTACCGGTCCCAGAAGTGTCATA G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74385:110..310+

>mRNA_M-pyrifera_M_contig74385.17611.1 ID=mRNA_M-pyrifera_M_contig74385.17611.1|Name=mRNA_M-pyrifera_M_contig74385.17611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig74385:110..310+ (Macrocystis pyrifera P11B4 male)
GGAGACGCGCCCGGGTGGAGGTACGCCTTCCCGGCGCTGGAGGACATCAG
GGAGTACGTCAAGCAGCAAATCAAAACCCTCCGAGAAGACCACCTCCGCG
CCCTCAACCCAACGCCATACAAGGTCTCCGTCTCCGCAGAACTCTACGAC
TTTGTGCACTCCCTCTGGGCCAAAGAGGTACCGGTCCCAGAAGTGTCATA
GGGAGACGCGCCCGGGTGGAGGTACGCCTTCCCGGCGCTGGAGGACATCA
GGGAGTACGTCAAGCAGCAAATCAAAACCCTCCGAGAAGACCACCTCCGC
GCCCTCAACCCAACGCCATACAAGGTCTCCGTCTCCGCAGAACTCTACGA
CTTTGTGCACTCCCTCTGGGCCAAAGAGGTACCGGTCCCAGAAGTGTCAT
AG
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