mRNA_M-pyrifera_M_contig74384.17610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74384.17610.1
Unique NamemRNA_M-pyrifera_M_contig74384.17610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A813A1G8_9DINO (FER1L6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1G8_9DINO)

HSP 1 Score: 105 bits (261), Expect = 1.960e-24
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYV++GRD +P D   + DPYL L LG E  + DR+ YIP T  P+FYRC E  A LPG SRL I  +DYD +TFDDFIG T++DL
Sbjct:  166 VYVMDGRDFIPTD-GNSGDPYLVLTLGDEK-VSDRKRYIPKTLSPQFYRCLEIKANLPGPSRLHIAAWDYDYVTFDDFIGETIVDL 249
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A5A8E513_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E513_CAFRO)

HSP 1 Score: 105 bits (261), Expect = 2.010e-24
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYV++GRD +P D   + DPYL L LG E  + DR+ YIP T  P+FYRC E  A LPG SRL I  +DYD +TFDDFIG T++DL
Sbjct: 1859 VYVMDGRDFIPTD-GNSGDPYLVLTLGDEK-VSDRKRYIPKTLSPQFYRCLEIKANLPGPSRLHIAAWDYDYVTFDDFIGETIVDL 1942
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A6G0X568_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X568_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.760e-23
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYVL+  +L PKD +G SDPYLRL LG +  + DR NY   T +P+FY+CY F   +PG S+L I V+DYD I  DDFIG TVIDL
Sbjct: 1278 VYVLKALNLQPKDRNGFSDPYLRLSLG-KTKLNDRVNYKKKTLNPDFYKCYVFDTTIPGPSQLAIQVWDYDRIGTDDFIGETVIDL 1362
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A485KP15_9STRA (Aste57867_9797 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KP15_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.130e-22
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VY+L   +L PK+ +G SDPYLRL LG +  I DR NY   T  PEFY+C+ F   +PG S+L I V+DYD I  DDFIG T+IDL
Sbjct: 1291 VYILRATNLQPKNSNGLSDPYLRLSLG-KTKINDRANYKKKTLCPEFYKCFVFDTTIPGPSQLAIQVWDYDRIGTDDFIGETIIDL 1375
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A024UM75_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM75_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.410e-22
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYVL   +L PKD +G SDPYLRL LG +    DR  Y   T +P+FY+CY F   +PG S+L I V+DYD I  DDFIG T+IDL
Sbjct: 1287 VYVLRATNLQPKDRNGLSDPYLRLTLG-KTRFNDRLAYKKKTLNPDFYKCYVFDTTIPGPSQLAIQVWDYDRIGTDDFIGETIIDL 1371
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A485K7P4_9STRA (Aste57867_468 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7P4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.390e-22
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITF-----DDFIGRTVIDL 258
            VYVL+   L  KD +G SDPYLRL+LG++    DR+ YI ++ +P+F+  YEF A LPGAS L I+ YDYD         DDFIG T IDL
Sbjct: 1326 VYVLDAFSLQAKDQNGKSDPYLRLKLGNDTIFNDRERYIEASLNPKFHNVYEFKANLPGASALTIECYDYDLFALSADCGDDFIGATTIDL 1416
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BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A397C6Y4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C6Y4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.910e-21
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYVL+  +L PKD +G SDPYLRL LG +  +  R  Y   T  P+FY+CY F   +PG S+L I V+DYD +  DDFIG TVIDL
Sbjct:   61 VYVLKAANLQPKDRNGLSDPYLRLTLG-KTKVNGRAAYKKKTLHPDFYKCYVFDTTIPGPSQLAIQVWDYDRMGTDDFIGETVIDL 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A024TTP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTP8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.570e-21
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITF-----DDFIGRTVIDL 258
            VY+L+   L  KD +G SDPYLRL+LG++  + DR  YI +T +P+F+  YEF A LPGAS L I+ +DYD  +      DDFIG T IDL
Sbjct: 1312 VYILDAFALQAKDQNGKSDPYLRLKLGNDTIVNDRARYIEATLNPKFHTLYEFKANLPGASELTIECFDYDLFSLSADCGDDFIGATKIDL 1402
[Close]
BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A3R7A704_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A704_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.250e-21
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            VYVL+  +L PKD +G SDPYLRL LG +  +  R  Y   T  P+FY+CY F   +PG S+L I V+DYD +  DDFIG TVIDL
Sbjct:  471 VYVLKAANLQPKDRNGLSDPYLRLTLG-KTKVNGRAAYKKKTLHPDFYKCYVFDTTIPGPSQLAIQVWDYDRMGTDDFIGETVIDL 555
[Close]
BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Match: A0A2G9RMD1_LITCT (Uncharacterized protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RMD1_LITCT)

HSP 1 Score: 95.9 bits (237), Expect = 3.330e-21
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 VYVLEGRDLMPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPGASRLEIDVYDYDTITFDDFIGRTVIDL 258
            +Y++ G DL PKD +G  DPY+++ L  +V I DR NYIP+T +P F R YE +  LP    L+I VYDYDT+T D+ +G T+IDL
Sbjct:  126 IYIIRGIDLQPKDSNGLCDPYIKITLSKKV-IEDRDNYIPNTLNPAFGRMYELSCFLPQEKDLKISVYDYDTVTRDEKVGETIIDL 210
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74384.17610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813A1G8_9DINO1.960e-2456.98FER1L6 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A5A8E513_CAFRO2.010e-2456.98Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A6G0X568_9STRA1.760e-2356.98Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KP15_9STRA2.130e-2254.65Aste57867_9797 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024UM75_9STRA5.410e-2254.65Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485K7P4_9STRA7.390e-2251.65Aste57867_468 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A397C6Y4_9STRA1.910e-2153.49Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024TTP8_9STRA2.570e-2150.55Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7A704_9STRA3.250e-2153.49Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A2G9RMD1_LITCT3.330e-2150.00Uncharacterized protein n=1 Tax=Lithobates catesbe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74384contigM-pyrifera_M_contig74384:1..258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog157072.XP_008865007.1
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size258
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.2351387-UTR-M-pyrifera_M_contig74384:0..271622816642.2351387-UTR-M-pyrifera_M_contig74384:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74384 1..27 +
1692278094.2548912-UTR-M-pyrifera_M_contig74384:0..271692278094.2548912-UTR-M-pyrifera_M_contig74384:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74384 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.250292-CDS-M-pyrifera_M_contig74384:27..2581622816642.250292-CDS-M-pyrifera_M_contig74384:27..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74384 28..258 +
1692278094.2718036-CDS-M-pyrifera_M_contig74384:27..2581692278094.2718036-CDS-M-pyrifera_M_contig74384:27..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74384 28..258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74384.17610.1prot_M-pyrifera_M_contig74384.17610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74384 28..258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74384.17610.1

>prot_M-pyrifera_M_contig74384.17610.1 ID=prot_M-pyrifera_M_contig74384.17610.1|Name=mRNA_M-pyrifera_M_contig74384.17610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MPKDMSGTSDPYLRLQLGSEVAIRDRQNYIPSTTDPEFYRCYEFTAQLPG
ASRLEIDVYDYDTITFDDFIGRTVIDL
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mRNA from alignment at M-pyrifera_M_contig74384:1..258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74384.17610.1 ID=mRNA_M-pyrifera_M_contig74384.17610.1|Name=mRNA_M-pyrifera_M_contig74384.17610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig74384:1..258+ (Macrocystis pyrifera P11B4 male)
GTGTACGTGTTGGAAGGAAGAGACTTGATGCCAAAAGATATGAGTGGCAC
TTCAGATCCATATTTGCGGTTGCAATTAGGGAGTGAGGTTGCCATTCGAG
ATCGACAGAATTACATCCCATCTACCACAGATCCAGAGTTTTATCGATGC
TATGAGTTTACAGCACAACTTCCAGGTGCTTCTCGATTGGAAATCGATGT
GTATGACTACGACACAATCACATTTGATGACTTTATCGGCCGCACCGTGA
TCGACTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74384:1..258+

>mRNA_M-pyrifera_M_contig74384.17610.1 ID=mRNA_M-pyrifera_M_contig74384.17610.1|Name=mRNA_M-pyrifera_M_contig74384.17610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig74384:1..258+ (Macrocystis pyrifera P11B4 male)
ATGCCAAAAGATATGAGTGGCACTTCAGATCCATATTTGCGGTTGCAATT
AGGGAGTGAGGTTGCCATTCGAGATCGACAGAATTACATCCCATCTACCA
CAGATCCAGAGTTTTATCGATGCTATGAGTTTACAGCACAACTTCCAGGT
GCTTCTCGATTGGAAATCGATGTGTATGACTACGACACAATCACATTTGA
TGACTTTATCGGCCGCACCGTGATCGACTTGATGCCAAAAGATATGAGTG
GCACTTCAGATCCATATTTGCGGTTGCAATTAGGGAGTGAGGTTGCCATT
CGAGATCGACAGAATTACATCCCATCTACCACAGATCCAGAGTTTTATCG
ATGCTATGAGTTTACAGCACAACTTCCAGGTGCTTCTCGATTGGAAATCG
ATGTGTATGACTACGACACAATCACATTTGATGACTTTATCGGCCGCACC
GTGATCGACTTG
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