mRNA_M-pyrifera_M_contig74331.17605.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74331.17605.1
Unique NamemRNA_M-pyrifera_M_contig74331.17605.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: D7FKW8_ECTSI (SAS-6_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW8_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.260e-53
Identity = 84/144 (58.33%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L   D  A+ E+DPS+ DGFR++YDRE PFE+RVQE  DGP +VGTLEA++V+VL  GD    +S+RVEL SE+DLFF Y+HS+ +  +  +QEEQ+LMV FQDY  VL R LN+ I  PH+HL V VM  D +ARLDFI+NME
Sbjct:    5 LQTCDFGAIEEMDPSIADGFRVIYDREVPFELRVQESADGPQQVGTLEAIKVKVLMLGDDAAPQSVRVELSSEADLFFHYTHSIDDASFQVMQEEQKLMVEFQDYPNVLIRMLNNCIKEPHSHLVVFVMQHDVNARLDFIQNME 148          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A8J1ZE14_9DINO (Hypothetical protein n=2 Tax=unclassified Amoebophrya TaxID=2558461 RepID=A0A8J1ZE14_9DINO)

HSP 1 Score: 172 bits (435), Expect = 2.020e-51
Identity = 79/144 (54.86%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L + D +A+ E+DPS+ +G R+ YDRECPFE+RVQ+ + GP EVGTLEA++ ++L  GD ++   IR+EL SE+DLFF Y+HSV E+ +  +QE Q+LM+ F DY  V+ + LN+ I  PH+ LAV VM RDGHARLDFI+NME
Sbjct:   13 LDSFDFTAIEEMDPSLTEGHRVTYDRECPFELRVQDADTGPQEVGTLEAIKCKILLLGDEQQPNHIRIELTSENDLFFHYTHSVDEQGFRQMQESQKLMIDFPDYCSVVIKMLNNCIKEPHSFLAVFVMQRDGHARLDFIQNME 156          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A7S1XUL9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUL9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 7.290e-51
Identity = 78/144 (54.17%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L   D+SA+ E+DPS  +GF ++YDRE PFE+RVQ+ +DGP +VGTLEA++V++L  GD     ++R+EL SE+DLF+ Y+H + E  +  +QE+Q+LMV F DY  VL R LN+ I  PH HLAV VM +DG ARLDFI+NME
Sbjct:   12 LQTFDMSAIEEMDPSCAEGFNVIYDREVPFELRVQQNQDGPSQVGTLEAIKVKILLQGDDARPSAVRIELSSEADLFYHYAHLIDEAGFQVVQEQQKLMVEFADYPNVLIRMLNNCIREPHNHLAVFVMQQDGTARLDFIQNME 155          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A7S3JM65_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JM65_9SPIT)

HSP 1 Score: 170 bits (430), Expect = 1.420e-50
Identity = 77/144 (53.47%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L+A D  A+ E+DPS+ +G ++ Y+RE PFE+R+QE E GP EVGTLEA++V++L  GD   +E+I+VEL SE+D+FF Y+HS+ E+ +  +QE+Q+LM+ F DY+ +L + LNS I  PH+ LAV +M RDG ARLDFI+NME
Sbjct:   12 LNAFDFRAIDEMDPSLAEGHKLYYEREVPFELRIQESEGGPQEVGTLEAIKVKILVLGDEGNIENIKVELTSENDMFFHYTHSLTEDSFKIVQEDQKLMIEFNDYSNILIKMLNSCIKEPHSFLAVFIMQRDGSARLDFIQNME 155          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A0G4G043_9ALVE (SAS-6_N domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G043_9ALVE)

HSP 1 Score: 169 bits (428), Expect = 3.500e-50
Identity = 79/144 (54.86%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            LS  D SA+ E+DPS+RDG R+VYDRECPFE+RVQ+    P EVGTLEA++ +++  G+    + +RVEL+SE DLFF + H+V EE +  +QE Q+LM+ F DY  VL + LNS I  PH+ LAV VM + G ARLDFI+NME
Sbjct:    8 LSTFDFSAIEEMDPSIRDGHRVVYDRECPFELRVQDSRSSPTEVGTLEAIKCKIVVLGEESMPQEVRVELISEHDLFFHFHHTVNEERFRGMQETQKLMIDFNDYVNVLVKMLNSCIKEPHSFLAVFVMQKTGQARLDFIQNME 151          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A835YXQ7_9STRA (SAS-6_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXQ7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.680e-50
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            +   + +++ ++DPSV DGFRIVYDRE PFE+RVQ+G DGP  VGTLEA++V+VL  GDG   + +RVEL SE+DLFF Y H V E  +AA+QE+QRL + F DY  VL R LN  I  PH+HLAV VM  +  ARLDFI+NME
Sbjct:    1 MQTFEYTSIEDMDPSVADGFRIVYDREVPFELRVQDGADGPQHVGTLEAIKVKVLVLGDGALPQGVRVELSSEADLFFHYMHVVDEGAFAAMQEQQRLTLDFADYPAVLIRMLNQCIREPHSHLAVYVMQHELDARLDFIQNME 144          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A7S0F8G2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0F8G2_9DINO)

HSP 1 Score: 169 bits (428), Expect = 4.540e-50
Identity = 78/144 (54.17%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L A D +A+ E+DPS+ +G R+VYDRE PFE+RVQ+ + GP EVGTLEAV+ ++L  G+ +  +  R+EL SE+DLFF Y+H V E  + ++QE Q+LM+ FQ+Y+ VL + LN+ I  PH++LAV +M RDGHARLDFI+NME
Sbjct:   38 LDAFDFTAIEEMDPSLAEGHRVVYDREVPFELRVQDADTGPQEVGTLEAVKCKILALGEEQTPQHCRIELTSENDLFFHYTHGVDEHGFRSMQEHQKLMIDFQEYSAVLIKMLNNCIKEPHSYLAVFIMQRDGHARLDFIQNME 181          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A1Q9DXU8_SYMMI (SAS-6_N domain-containing protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DXU8_SYMMI)

HSP 1 Score: 168 bits (426), Expect = 5.730e-50
Identity = 81/144 (56.25%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L A D SAL E+DPS+ +G R+VYDRE PFE+RVQ+ E GP EVGTLEA+R ++L  G+    +  R+EL SE+DLFF + HSV E  +  +QE+Q+LM+ F DY  V+ + LN+ I  PH+ LAV VM RDGHARLDFI+NME
Sbjct:   22 LDAFDFSALEEMDPSLSEGHRVVYDREVPFELRVQDAESGPQEVGTLEAIRCKILALGEELSPQHCRIELTSENDLFFHFVHSVDEHSFREMQEQQKLMIDFPDYVAVVIKMLNNCIKEPHSFLAVFVMQRDGHARLDFIQNME 165          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A7S3NQG3_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NQG3_EUPCR)

HSP 1 Score: 166 bits (419), Expect = 6.550e-50
Identity = 77/144 (53.47%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L+A D  A+ E+DPS+ +G RIVY+RE PFE+R+Q+ + GP EVGTLEA++V++L  G+    E IRVEL SE+D+FF Y+H++ E  ++ +QE Q+LMV + DY  +L + LNS I  PH+ LAV +M RDG ARLDFI+NME
Sbjct:    7 LNAFDFQAIDEMDPSLSEGHRIVYEREVPFELRIQDNDTGPQEVGTLEAIKVKILVLGEDGNPEQIRVELSSENDMFFHYTHNIEEGSFSKVQETQKLMVEYPDYPNILIKMLNSCIKEPHSFLAVFIMQRDGSARLDFIQNME 150          
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Match: A0A7S3KUF3_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KUF3_EUPCR)

HSP 1 Score: 167 bits (422), Expect = 1.930e-49
Identity = 77/144 (53.47%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAVRVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMVPFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME 432
            L+A D  A+ E+DPS+ +G RIVY+RE PFE+R+Q+G+ GP EVGTLEA++V++L  G+    E I+VEL SE+D+FF Y+H++ E  ++ +QE Q+LMV + DY  +L + LNS I  PH+ LAV +M RDG ARLDFI+NME
Sbjct:   11 LNAFDFQAIDEMDPSLSEGHRIVYEREVPFELRIQDGDTGPQEVGTLEAIKVKILVLGEDGNPEQIKVELSSENDMFFHYTHNIEELSFSKVQESQKLMVDYPDYPNILIKMLNSCIKEPHSFLAVFIMQRDGSARLDFIQNME 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74331.17605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW8_ECTSI1.260e-5358.33SAS-6_N domain-containing protein n=2 Tax=Ectocarp... [more]
A0A8J1ZE14_9DINO2.020e-5154.86Hypothetical protein n=2 Tax=unclassified Amoeboph... [more]
A0A7S1XUL9_9STRA7.290e-5154.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JM65_9SPIT1.420e-5053.47Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A0G4G043_9ALVE3.500e-5054.86SAS-6_N domain-containing protein n=1 Tax=Chromera... [more]
A0A835YXQ7_9STRA3.680e-5057.64SAS-6_N domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S0F8G2_9DINO4.540e-5054.17Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A1Q9DXU8_SYMMI5.730e-5056.25SAS-6_N domain-containing protein n=3 Tax=Symbiodi... [more]
A0A7S3NQG3_EUPCR6.550e-5053.47Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A7S3KUF3_EUPCR1.930e-4953.47Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74331contigM-pyrifera_M_contig74331:1..565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue5.6e-42
Seed eggNOG ortholog2880.D7FKW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Centriolar protein SAS N-terminal
EggNOG OGs299C8@1,2RGE2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.0061367-CDS-M-pyrifera_M_contig74331:0..3501622816642.0061367-CDS-M-pyrifera_M_contig74331:0..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74331 1..350 -
1692278094.1466827-CDS-M-pyrifera_M_contig74331:0..3501692278094.1466827-CDS-M-pyrifera_M_contig74331:0..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74331 1..350 -
1622816642.0268326-CDS-M-pyrifera_M_contig74331:483..5651622816642.0268326-CDS-M-pyrifera_M_contig74331:483..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74331 484..565 -
1692278094.1590664-CDS-M-pyrifera_M_contig74331:483..5651692278094.1590664-CDS-M-pyrifera_M_contig74331:483..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74331 484..565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74331.17605.1prot_M-pyrifera_M_contig74331.17605.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74331 1..565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74331.17605.1

>prot_M-pyrifera_M_contig74331.17605.1 ID=prot_M-pyrifera_M_contig74331.17605.1|Name=mRNA_M-pyrifera_M_contig74331.17605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
LSAVDVSALRELDPSVRDGFRIVYDRECPFEMRVQEGEDGPGEVGTLEAV
RVRVLTAGDGEEVESIRVELMSESDLFFSYSHSVREEEYAAIQEEQRLMV
PFQDYAGVLSRSLNSVITHPHTHLAVLVMHRDGHARLDFIENME
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mRNA from alignment at M-pyrifera_M_contig74331:1..565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74331.17605.1 ID=mRNA_M-pyrifera_M_contig74331.17605.1|Name=mRNA_M-pyrifera_M_contig74331.17605.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=565bp|location=Sequence derived from alignment at M-pyrifera_M_contig74331:1..565- (Macrocystis pyrifera P11B4 male)
CTTTCTGCAGTGGATGTATCTGCGTTGCGAGAGCTTGACCCTTCGGTGAG GGATGGATTTCGGATCGTTTACGATCGAGAGTGTACGTGTGTGGAGAGTT TGGTGTGGGTTGTGTGTTGGGCGGGTTTGGGTGGAGGGAGGAGGGGTGAG TGTTGGTGATTTGGCGTCTGGTCGTGGATTAGCTGTTGGTGGGGTGTTGG TTCGTTGCGATGCAGGTCCTTTCGAGATGCGAGTGCAAGAGGGCGAGGAC GGTCCTGGGGAGGTTGGCACGTTGGAGGCAGTGCGGGTGCGAGTGTTGAC TGCAGGGGACGGGGAGGAGGTGGAGAGCATTCGCGTGGAGCTGATGAGCG AGAGCGACCTCTTCTTCAGCTACTCGCACTCGGTGCGGGAGGAGGAGTAT GCGGCGATCCAGGAGGAGCAGAGGCTGATGGTGCCGTTCCAAGACTACGC CGGGGTCTTGTCCCGTTCCCTCAACTCGGTGATCACACACCCCCACACCC ACCTGGCAGTGCTCGTGATGCACAGAGACGGACATGCGCGGCTCGATTTT ATCGAGAACATGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74331:1..565-

>mRNA_M-pyrifera_M_contig74331.17605.1 ID=mRNA_M-pyrifera_M_contig74331.17605.1|Name=mRNA_M-pyrifera_M_contig74331.17605.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig74331:1..565- (Macrocystis pyrifera P11B4 male)
CTTTCTGCAGTGGATGTATCTGCGTTGCGAGAGCTTGACCCTTCGGTGAG
GGATGGATTTCGGATCGTTTACGATCGAGAGTCTTTCTGCAGTGGATGTA
TCTGCGTTGCGAGAGCTTGACCCTTCGGTGAGGGATGGATTTCGGATCGT
TTACGATCGAGAGTGTCCTTTCGAGATGCGAGTGCAAGAGGGCGAGGACG
GTCCTGGGGAGGTTGGCACGTTGGAGGCAGTGCGGGTGCGAGTGTTGACT
GCAGGGGACGGGGAGGAGGTGGAGAGCATTCGCGTGGAGCTGATGAGCGA
GAGCGACCTCTTCTTCAGCTACTCGCACTCGGTGCGGGAGGAGGAGTATG
CGGCGATCCAGGAGGAGCAGAGGCTGATGGTGCCGTTCCAAGACTACGCC
GGGGTCTTGTCCCGTTCCCTCAACTCGGTGATCACACACCCCCACACCCA
CCTGGCAGTGCTCGTGATGCACAGAGACGGACATGCGCGGCTCGATTTTA
TCGAGAACATGGAGGTCCTTTCGAGATGCGAGTGCAAGAGGGCGAGGACG
GTCCTGGGGAGGTTGGCACGTTGGAGGCAGTGCGGGTGCGAGTGTTGACT
GCAGGGGACGGGGAGGAGGTGGAGAGCATTCGCGTGGAGCTGATGAGCGA
GAGCGACCTCTTCTTCAGCTACTCGCACTCGGTGCGGGAGGAGGAGTATG
CGGCGATCCAGGAGGAGCAGAGGCTGATGGTGCCGTTCCAAGACTACGCC
GGGGTCTTGTCCCGTTCCCTCAACTCGGTGATCACACACCCCCACACCCA
CCTGGCAGTGCTCGTGATGCACAGAGACGGACATGCGCGGCTCGATTTTA
TCGAGAACATGGAG
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