mRNA_M-pyrifera_M_contig74288.17592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74288.17592.1
Unique NamemRNA_M-pyrifera_M_contig74288.17592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A383VM41_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VM41_TETOB)

HSP 1 Score: 80.9 bits (198), Expect = 9.540e-15
Identity = 62/178 (34.83%), Postives = 85/178 (47.75%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALR-DARARAKVRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAAD----REQEFDLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F PRV+EADARAF+D    L + FE DW RA              K + A + D +A  +V  +L+  Y +    F F++ G G DP+ M LN FT    DAGI   D    +  + D  F+     P       A   E     A+ R EF+E +VR A+  Y  G +T
Sbjct: 2177 PWTLPGSIFKPRVKEADARAFYDGGATLDKMFERDWQRACAKEKFTSMLARENKSNAAGKSDKQALQEVHDMLKRHYQVFYSTFVFYSNG-GNDPYHMSLNAFTTLLDDAGIPDPDSLSIKRSDCDTIFIVCNFQPDKNSPDVAVNDE----HAMMRFEFMECIVRLAIAKYGKGQST 2349          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A482UI44_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UI44_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 1.700e-14
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 PWSLEKS-VFAPRVREADARAFFDTPRLLARAFEADWARAKMDRALRDARARAKVRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEFDLAFL 333
            PW L  S  +A R +EAD+  ++DTP  L R FE DWA   + R + +   RA++++ ++PR+ LLRE+F+ H   +G + +++ L +F  FRR  G+++  R  E D+AF 
Sbjct:  695 PWKLSTSHTWANRPKEADSGDWYDTPAFLERVFENDWAALHLQRLVPNPAERARIKAAIKPRFTLLRELFK-HFASRGGNAFSVTLPQFIEFRRAIGLDSTSRTAELDMAFF 805          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A7S0RZH0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RZH0_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.370e-13
Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA-----------KMDRALRDAR----ARAKVRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEF------DLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F PR +E+DARAF DT   + + FE DWARA           + ++A +DA+    A   V  +L   Y L    F + A     DP+ M LN +TAF  +  I  AD E +F      D  F+     P       A   E     A+ R+EFLE++VR  +  Y  G  T
Sbjct:  263 PWTLPMSIFKPRAKESDARAFHDTDPAMEKMFERDWARACGKEKFTSMMARENKACKDAKDDKAALKDVHDVLLEYYNLWFSAFMYFAAFGSNDPYHMPLNAYTAFLDECQI--ADSESQFIKRSDCDTIFIVCNFQPDKKSAEAAVNVE----NAMMRYEFLESLVRSGIAKYGKGQAT 436          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A7S0YC55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YC55_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 2.460e-13
Identity = 58/177 (32.77%), Postives = 85/177 (48.02%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEF------DLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPG 468
            PW+L  S+F PRVRE+DA+ FFD+ ++  + FE DW RA              K  +A +D +   K +  +L   Y  L   F ++A     DP+ + LN FT+F  +  I  AD E +F      D  F+     P       +A  +     A+ R+E+LEA+VR AL  Y  G
Sbjct:  222 PWTLPSSIFKPRVRESDAKGFFDSHQVEEKMFERDWQRACAKEKFMSMLIRENKAGKAGKDEKVAIKEIHDVLLKNYLQLYGAFVYYAAAGTGDPYHLSLNAFTSFLDECAI--ADSESQFCKRSDCDTVFIVCNFQPDKK----SAEAQVNIENAMMRYEYLEAIVRLALSKYGKG 392          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A836C3S2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C3S2_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 2.840e-13
Identity = 56/178 (31.46%), Postives = 84/178 (47.19%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAAD----REQEFDLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F  RV+E DARAFFD+ ++  + FE DW RA              K ++  +D +   K V  +L   +  +   F ++A G   DP+ M LN FT F  +  I  +D    +  + D  F+     P       +A  +     A+ R+EFLEA+VR A+  Y  G  T
Sbjct: 2113 PWTLPSSIFKNRVKECDARAFFDSHQVEEKMFERDWMRATSKEKFASMMSRENKANKEGKDEKVAIKEVHDVLLKYWAQVLGAFVYYAAGGSGDPYHMSLNAFTTFLDECAIADSDSQYCKRSDCDTIFIVCNFQPDKK----SAEAQVNMENAMMRYEFLEAIVRLAIAKYGKGQAT 2286          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: D8TWU5_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TWU5_VOLCA)

HSP 1 Score: 75.5 bits (184), Expect = 7.130e-13
Identity = 59/180 (32.78%), Postives = 84/180 (46.67%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEF------DLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F  RV+E DARAF+D  ++  R FE DW RA              K ++  +D +   K +  +L   +  +   + ++A G   DP+ M LN FT F  D GI  AD E ++      D  F+     P       A   E     A+ R+EFLEA+VR A+  Y  G  T
Sbjct: 1826 PWTLPNSIFKNRVKECDARAFYDAHQVEERMFERDWQRACSKEKFTSMMSRENKANKEGKDEKVAIKEIHDVLLRHWPQVYGAYVYYAAGGTGDPYHMSLNAFTTFLDDCGI--ADPESQYCKRSDCDTIFIVCNFQPDKKSAEAAVNME----NAMMRYEFLEAIVRLAIAKYGKGQQT 1999          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A8J6CJV0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CJV0_DIALT)

HSP 1 Score: 74.7 bits (182), Expect = 1.330e-12
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARAKMDR------------ALRDARARAKVRSLLRPRYGLLREVFRFHAL-GQGLDPWTMGLNEFTAFRRDAGIEAAD----REQEFDLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLY 459
            PWSL+ S+FAPR R +DARA++ T  +L R F  DW+R +  R            AL      A+VR+ L  +  LL  VF ++ L G   D + + +NE+T F  +  I   +    R+ + D  F+ A             A + G  +AL R+++L+ VVR A+  Y
Sbjct: 2058 PWSLDTSIFAPRKRTSDARAYYTTAYVLKRGFALDWSRCESARFQRLISLEDDGGALGLVDELAEVRTALEAKCALLYSVFTYYCLRGSAYDNFVLSMNEYTRFCDECRIPEPESRFCRQADLDTIFIAACPKDDD------KAAQLGVDRALLRYQWLQVVVRIAIAKY 2221          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A8J4GTV8_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GTV8_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.760e-12
Identity = 59/180 (32.78%), Postives = 84/180 (46.67%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEF------DLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F  RV+E DARAF+D+ ++  R FE DW RA              K ++  +D +   K V  +L   +  +   + ++A G   DP+ M LN FT F  D  I  AD E ++      D  F+     P       A   E     A+ R+EFLEA+VR A+  Y  G  T
Sbjct: 1062 PWTLPNSIFKNRVKECDARAFYDSHQVEERMFERDWLRACSKEKFTSMMSRENKANKEGKDEKVAIKEVHDVLLKNWPQVFGAYVYYAAGGTGDPYHMSLNAFTTFLDDCNI--ADSESQYCKRSDCDTIFIVCNFQPDKKSAEAAVNME----NAMMRYEFLEAIVRLAIAKYGKGQQT 1235          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A835T4M1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T4M1_CHLIN)

HSP 1 Score: 73.9 bits (180), Expect = 2.150e-12
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAAD----REQEFDLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F  RV+E DARAFFD+  +  + FE DW RA              K ++  +D +   K V  +L   +  +   F ++A G   DP+ M LN FT F  +  I  +D    +  + D  F+     P       +A  +     A+ R+EFLEA+VR A+  Y  G  T
Sbjct:  188 PWTLPSSIFKNRVKECDARAFFDSHAVEEKMFERDWQRACAKEKFTSMMSRENKANKEGKDEKVAIKEVHDVLLKYWPQVVGAFVYYAAGGSSDPYHMSLNAFTTFLDECCIADSDSQYCKRSDCDTVFIVCNFQPDKK----SAEAQVNMENAMMRYEFLEAIVRLAISKYGKGQAT 361          
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Match: A0A8J4BQW0_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4BQW0_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 3.350e-12
Identity = 59/180 (32.78%), Postives = 83/180 (46.11%), Query Frame = 1
Query:    1 PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARA--------------KMDRALRDARARAK-VRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAADREQEF------DLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCALVLYPPGVTT 477
            PW+L  S+F  RV+E DARAF+D  ++  R FE DW RA              K ++  +D +   K V  +L   +  +   + ++A G   DP+ M LN FT F  D  I  AD E ++      D  F+     P       A   E     A+ R+EFLEA+VR A+  Y  G  T
Sbjct: 2072 PWTLPNSIFKNRVKECDARAFYDAHQVEERMFERDWQRACSKEKFTSMMSRENKANKEGKDEKVAIKEVHGVLLKNWPQVFGAYVYYAAGGTGDPYHMSLNAFTTFLDDCSI--ADPESQYCKRSDCDTIFIVCNFQPDKKSAEAAVNME----NAMMRYEFLEAIVRLAIAKYGKGQQT 2245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74288.17592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A383VM41_TETOB9.540e-1534.83Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A482UI44_9ARCH1.700e-1437.50Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S0RZH0_9CHLO1.370e-1333.89Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S0YC55_9CHLO2.460e-1332.77Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A836C3S2_9CHLO2.840e-1331.46Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
D8TWU5_VOLCA7.130e-1332.78Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A8J6CJV0_DIALT1.330e-1232.35Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J4GTV8_9CHLO1.760e-1232.78Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835T4M1_CHLIN2.150e-1231.46Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A8J4BQW0_9CHLO3.350e-1232.78Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74288contigM-pyrifera_M_contig74288:89..565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog3067.XP_002950897.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8BZ@1,2S345@2759,34JD3@3041,37Z2Z@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.3384573-CDS-M-pyrifera_M_contig74288:88..5651622816641.3384573-CDS-M-pyrifera_M_contig74288:88..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74288 89..565 -
1692278093.7419984-CDS-M-pyrifera_M_contig74288:88..5651692278093.7419984-CDS-M-pyrifera_M_contig74288:88..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74288 89..565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74288.17592.1prot_M-pyrifera_M_contig74288.17592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74288 89..565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74288.17592.1

>prot_M-pyrifera_M_contig74288.17592.1 ID=prot_M-pyrifera_M_contig74288.17592.1|Name=mRNA_M-pyrifera_M_contig74288.17592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
PWSLEKSVFAPRVREADARAFFDTPRLLARAFEADWARAKMDRALRDARA
RAKVRSLLRPRYGLLREVFRFHALGQGLDPWTMGLNEFTAFRRDAGIEAA
DREQEFDLAFLQATVAPGLGRGGGAAAGEAGAGKALRRHEFLEAVVRCAL
VLYPPGVTT
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mRNA from alignment at M-pyrifera_M_contig74288:89..565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74288.17592.1 ID=mRNA_M-pyrifera_M_contig74288.17592.1|Name=mRNA_M-pyrifera_M_contig74288.17592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig74288:89..565- (Macrocystis pyrifera P11B4 male)
CCGTGGTCGCTGGAAAAGAGCGTTTTCGCGCCTCGCGTGCGCGAAGCCGA CGCACGTGCGTTTTTCGACACGCCGCGGCTGCTCGCGCGCGCCTTCGAGG CGGACTGGGCGCGCGCGAAGATGGATCGGGCGCTACGGGACGCGAGGGCA CGCGCCAAGGTGCGATCTCTGTTGCGGCCTCGGTACGGGCTGCTTCGGGA GGTGTTTCGGTTCCATGCGTTGGGCCAGGGCCTGGACCCGTGGACGATGG GCTTGAACGAGTTCACTGCGTTCCGGCGGGACGCCGGGATCGAGGCGGCG GATCGGGAGCAAGAGTTTGACCTGGCGTTTTTGCAGGCCACGGTGGCGCC CGGGCTGGGTCGAGGTGGCGGGGCGGCGGCGGGGGAGGCCGGCGCGGGAA AGGCACTGCGCAGACACGAGTTCCTGGAGGCAGTGGTGCGTTGCGCACTT GTGCTCTATCCGCCGGGCGTTACAACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74288:89..565-

>mRNA_M-pyrifera_M_contig74288.17592.1 ID=mRNA_M-pyrifera_M_contig74288.17592.1|Name=mRNA_M-pyrifera_M_contig74288.17592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig74288:89..565- (Macrocystis pyrifera P11B4 male)
CCGTGGTCGCTGGAAAAGAGCGTTTTCGCGCCTCGCGTGCGCGAAGCCGA
CGCACGTGCGTTTTTCGACACGCCGCGGCTGCTCGCGCGCGCCTTCGAGG
CGGACTGGGCGCGCGCGAAGATGGATCGGGCGCTACGGGACGCGAGGGCA
CGCGCCAAGGTGCGATCTCTGTTGCGGCCTCGGTACGGGCTGCTTCGGGA
GGTGTTTCGGTTCCATGCGTTGGGCCAGGGCCTGGACCCGTGGACGATGG
GCTTGAACGAGTTCACTGCGTTCCGGCGGGACGCCGGGATCGAGGCGGCG
GATCGGGAGCAAGAGTTTGACCTGGCGTTTTTGCAGGCCACGGTGGCGCC
CGGGCTGGGTCGAGGTGGCGGGGCGGCGGCGGGGGAGGCCGGCGCGGGAA
AGGCACTGCGCAGACACGAGTTCCTGGAGGCAGTGGTGCGTTGCGCACTT
GTGCTCTATCCGCCGGGCGTTACAACGCCGTGGTCGCTGGAAAAGAGCGT
TTTCGCGCCTCGCGTGCGCGAAGCCGACGCACGTGCGTTTTTCGACACGC
CGCGGCTGCTCGCGCGCGCCTTCGAGGCGGACTGGGCGCGCGCGAAGATG
GATCGGGCGCTACGGGACGCGAGGGCACGCGCCAAGGTGCGATCTCTGTT
GCGGCCTCGGTACGGGCTGCTTCGGGAGGTGTTTCGGTTCCATGCGTTGG
GCCAGGGCCTGGACCCGTGGACGATGGGCTTGAACGAGTTCACTGCGTTC
CGGCGGGACGCCGGGATCGAGGCGGCGGATCGGGAGCAAGAGTTTGACCT
GGCGTTTTTGCAGGCCACGGTGGCGCCCGGGCTGGGTCGAGGTGGCGGGG
CGGCGGCGGGGGAGGCCGGCGCGGGAAAGGCACTGCGCAGACACGAGTTC
CTGGAGGCAGTGGTGCGTTGCGCACTTGTGCTCTATCCGCCGGGCGTTAC
AACG
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