mRNA_M-pyrifera_M_contig74217.17580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74217.17580.1
Unique NamemRNA_M-pyrifera_M_contig74217.17580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74217.17580.1 vs. uniprot
Match: UPI0019A52CE0 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A52CE0)

HSP 1 Score: 106 bits (265), Expect = 7.890e-27
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 1 
Query:    1 MTVRK-GFEGQALYGTAGTTASTLLENCRDITYNVENEFGDTTVRGDGSAVPIQTQSKTLRTMSIEITMLHDDIDTAFQALQTAAGGSDPVAIRTRSYSSGKGYDGDCHVAMGNPYPMAGEQLTTFTLTPTRDGGRMPQ 414
            M V+K GFEG+  YG AG+  ST + N RDIT + +   GDTTVRG G+  PI+T     R   IE  M++   DT   AL  AA   +PVAIRT++++SG GYDGD ++   +  P+ GEQ   F+ TP  D  R PQ
Sbjct:    1 MPVKKMGFEGKIYYGVAGSAGSTEITNSRDITESFDTGDGDTTVRGAGTNPPIETSRVVSRKYGIEWQMIYKSDDTTLLALIAAAVAGNPVAIRTKAFTSGLGYDGDMNIKYKHGKPLKGEQTLDFSGTPN-DDSRDPQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74217.17580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019A52CE07.890e-2745.32Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74217contigM-pyrifera_M_contig74217:84..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.827368-CDS-M-pyrifera_M_contig74217:83..5091622816640.827368-CDS-M-pyrifera_M_contig74217:83..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74217 84..509 -
1692278093.4589577-CDS-M-pyrifera_M_contig74217:83..5091692278093.4589577-CDS-M-pyrifera_M_contig74217:83..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74217 84..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74217.17580.1prot_M-pyrifera_M_contig74217.17580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74217 84..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74217.17580.1

>prot_M-pyrifera_M_contig74217.17580.1 ID=prot_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MTVRKGFEGQALYGTAGTTASTLLENCRDITYNVENEFGDTTVRGDGSAV
PIQTQSKTLRTMSIEITMLHDDIDTAFQALQTAAGGSDPVAIRTRSYSSG
KGYDGDCHVAMGNPYPMAGEQLTTFTLTPTRDGGRMPQAWV*
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mRNA from alignment at M-pyrifera_M_contig74217:84..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74217.17580.1 ID=mRNA_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:84..509- (Macrocystis pyrifera P11B4 male)
ATGACAGTACGAAAAGGCTTTGAAGGGCAGGCACTTTACGGCACCGCAGG
CACTACCGCCAGCACGCTTCTGGAGAACTGTCGAGACATTACCTACAACG
TCGAAAACGAGTTCGGTGATACGACCGTTCGCGGCGATGGCTCGGCAGTC
CCGATCCAGACGCAAAGCAAAACCCTGCGAACCATGAGCATTGAAATCAC
GATGTTGCATGATGACATCGATACCGCATTCCAAGCCCTGCAAACCGCCG
CCGGTGGAAGTGACCCGGTAGCTATTCGCACTAGGAGCTACTCCAGCGGC
AAGGGATACGACGGGGACTGCCATGTAGCCATGGGCAACCCTTACCCGAT
GGCCGGCGAACAGTTGACCACCTTCACGCTTACGCCGACTCGCGATGGTG
GCCGGATGCCGCAAGCCTGGGTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74217:84..509-

>mRNA_M-pyrifera_M_contig74217.17580.1 ID=mRNA_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:84..509- (Macrocystis pyrifera P11B4 male)
ATGACAGTACGAAAAGGCTTTGAAGGGCAGGCACTTTACGGCACCGCAGG
CACTACCGCCAGCACGCTTCTGGAGAACTGTCGAGACATTACCTACAACG
TCGAAAACGAGTTCGGTGATACGACCGTTCGCGGCGATGGCTCGGCAGTC
CCGATCCAGACGCAAAGCAAAACCCTGCGAACCATGAGCATTGAAATCAC
GATGTTGCATGATGACATCGATACCGCATTCCAAGCCCTGCAAACCGCCG
CCGGTGGAAGTGACCCGGTAGCTATTCGCACTAGGAGCTACTCCAGCGGC
AAGGGATACGACGGGGACTGCCATGTAGCCATGGGCAACCCTTACCCGAT
GGCCGGCGAACAGTTGACCACCTTCACGCTTACGCCGACTCGCGATGGTG
GCCGGATGCCGCAAGCCTGGGTTTAAATGACAGTACGAAAAGGCTTTGAA
GGGCAGGCACTTTACGGCACCGCAGGCACTACCGCCAGCACGCTTCTGGA
GAACTGTCGAGACATTACCTACAACGTCGAAAACGAGTTCGGTGATACGA
CCGTTCGCGGCGATGGCTCGGCAGTCCCGATCCAGACGCAAAGCAAAACC
CTGCGAACCATGAGCATTGAAATCACGATGTTGCATGATGACATCGATAC
CGCATTCCAAGCCCTGCAAACCGCCGCCGGTGGAAGTGACCCGGTAGCTA
TTCGCACTAGGAGCTACTCCAGCGGCAAGGGATACGACGGGGACTGCCAT
GTAGCCATGGGCAACCCTTACCCGATGGCCGGCGAACAGTTGACCACCTT
CACGCTTACGCCGACTCGCGATGGTGGCCGGATGCCGCAAGCCTGGGTTT
AA
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