mRNA_M-pyrifera_M_contig74215.17578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74215.17578.1
Unique NamemRNA_M-pyrifera_M_contig74215.17578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A7Y4SUM1_9BACT (MCE family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4SUM1_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.620e-9
Identity = 43/136 (31.62%), Postives = 62/136 (45.59%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLRELSGRMTSGEGTMGKLFADDTLYTNLQTTVDGL 408
            +LLGGRHV I PG      L+ + G    G+V  NPI  L  I  L  +NR SI   F N+             LGRL+TDE L+ +    + + R      ++ S ++   +G  G L  D+T+      T+  L
Sbjct:  104 SLLGGRHVFIDPGTFGGRALQADEGGAYYGTVYKNPISMLGDIGTLFNENRESITQAFVNIRKITDDIAQGKGFLGRLVTDEALAADGKQVVADARLXXXXXKDASAQLKEKKGLAGALLYDETMKQQFSDTIASL 239
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A2D6HD39_9BACT (MlaD domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HD39_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-8
Identity = 38/129 (29.46%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLRELSGRMTSGEGTMGKLFADDTLYTNL 387
            TLLGGR ++I PG A +P  ++  G  L G+VAPN +++   ++EL+ +NR ++    + +             LG L  D+EL  +    +    +  +N+  ++  + +G+GT+G+L A+D +Y +L
Sbjct:  104 TLLGGRVLTIDPGPADSP--DLAAGADLTGTVAPNVMEA---VNELVAENRDALTEAISGVRELVSGVQEGRGALGPLFIDDELGADLKRGVASAADTFDNVERITADLAAGKGTIGRLLAEDEVYRSL 227
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A523PG00_9BACT (MCE family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PG00_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 5.980e-8
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLRELSGRMTSGEGTMGKLFADD 369
            T+LGG+H+S+ PG A++P+L   PG  L G V+PN    +  + +L+ +NR ++      L+           +L ++M D+E+S   + A+       EN+  LS  +  G GT G L  DD
Sbjct:  146 TILGGKHLSVDPGTASSPLLA--PGTELHGKVSPN---VMKAVEQLVEENRETLRGALAGLDIIIQDIQSSRSMLSKIMYDDEVSANFSSAVARIASSFENIDILSRDLRRGTGTFGMLLTDD 263
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A7C1X2P1_9BACT (MCE family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1X2P1_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.790e-7
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFR 288
            TLLGGRHV I PG    P  +  P   + G++  NPI++L  I E L+   GS+  I +NL+           L+GRL+TDE L+++ A ++   R
Sbjct:  105 TLLGGRHVQIEPGPYGGPPRD--PNAKIKGTIKRNPIEALGQIGEALSGGDGSLSRIISNLDEIVAGVRDGKGLVGRLLTDERLANDVADSVSSIR 198
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A521KQN6_9BACT (MCE family protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KQN6_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.060e-7
Identity = 43/168 (25.60%), Postives = 70/168 (41.67%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLRE----------------------------------LSGRMTSGEGTMGKLFADDTLYTNLQTTVD 402
            TLLGGR+++I PG A  P L++    PL G +A NP+++L     ++ +NR     +  NLE            +GRL+ DE+++ + + ++ +F                                           LSG + SG+G  GKL  D  L   L T ++
Sbjct:   56 TLLGGRNINIDPGPAGAPALDLASVGPLQGVIASNPLEALKDAGAVIAENRERFGQVVANLEAITSDVREGKGPIGRLLVDEKMASDLSTSLADFASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSGDLRSGQGLFGKLVYDQALADRLATEIE 223
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A2D5AUY0_9BACT (MlaD domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AUY0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 9.540e-7
Identity = 32/103 (31.07%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLR 309
            TLLGGRH+ I PG    P+L  +    L G +  NP+ +L  +  +L +NR +I NI  N +            +GR + DE +++E    I   R+  + L+
Sbjct:  104 TLLGGRHIDIDPGAFGGPLLVRDEDGALYGGIQKNPLQALGDLGAVLAENRAAIGNILNNTDAVIASVREGRGTVGRFLADEGMANEFVSTISNIRDATDQLQ 206
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BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Match: A0A518BPG4_9BACT (Mce related protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BPG4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.070e-5
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:    1 TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDNRGSIDNIFTNLEXXXXXXXXXXXLLGRLMTDEELSDETAVAIEEFREVAENLRELSGRMTSGEGTMGKLFADDTLY 378
            TLLGGR V+I PG   +P L I  G+ L G+V  +   ++  ++ ++ +    I NI  + E           ++G L  +  L++    A E+FR   E    L   + SGEG +G LF DD LY
Sbjct:  104 TLLGGRMVAIEPGPFGSPALTIGQGEVLTGTVPADIFAAMEDLASIIGEEGDGIRNIIRDAEK----------IVGDL-EEGGLAENLTKASEDFRTAGEGAASLVAGVESGEGNLGALFKDDALY 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74215.17578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7Y4SUM1_9BACT2.620e-931.62MCE family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A2D6HD39_9BACT2.200e-829.46MlaD domain-containing protein n=1 Tax=Planctomyce... [more]
A0A523PG00_9BACT5.980e-831.71MCE family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A7C1X2P1_9BACT1.790e-737.50MCE family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A521KQN6_9BACT2.060e-725.60MCE family protein (Fragment) n=1 Tax=Planctomycet... [more]
A0A2D5AUY0_9BACT9.540e-731.07MlaD domain-containing protein n=1 Tax=Planctomyce... [more]
A0A518BPG4_9BACT1.070e-532.54Mce related protein n=1 Tax=Planctomycetes bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74215contigM-pyrifera_M_contig74215:191..1081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size891
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.7625086-CDS-M-pyrifera_M_contig74215:190..10811622816640.7625086-CDS-M-pyrifera_M_contig74215:190..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74215 191..1081 -
1692278093.4145553-CDS-M-pyrifera_M_contig74215:190..10811692278093.4145553-CDS-M-pyrifera_M_contig74215:190..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74215 191..1081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74215.17578.1prot_M-pyrifera_M_contig74215.17578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74215 191..1081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74215.17578.1

>prot_M-pyrifera_M_contig74215.17578.1 ID=prot_M-pyrifera_M_contig74215.17578.1|Name=mRNA_M-pyrifera_M_contig74215.17578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=297bp
TLLGGRHVSILPGQATNPVLEIEPGKPLIGSVAPNPIDSLSGISELLTDN
RGSIDNIFTNLEGMTQDLRDGRGLLGRLMTDEELSDETAVAIEEFREVAE
NLRELSGRMTSGEGTMGKLFADDTLYTNLQTTVDGLADLTEGLQNGEGIA
GKLLNDDALAGELDRAVRNFTAVSDDLRAGKGTLGKLLADGTTADNIELI
SGDLRTITKQITEGQGTLGQLWANQELYDNLLGFSETMEAVMLDVQNGEG
TIAKLLTDDELYEELLTGVKLLNRSLEDYREAAPVSTFTNVLFNVF*
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mRNA from alignment at M-pyrifera_M_contig74215:191..1081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74215.17578.1 ID=mRNA_M-pyrifera_M_contig74215.17578.1|Name=mRNA_M-pyrifera_M_contig74215.17578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=891bp|location=Sequence derived from alignment at M-pyrifera_M_contig74215:191..1081- (Macrocystis pyrifera P11B4 male)
ACCCTGCTCGGGGGGCGCCACGTCAGCATCCTACCGGGCCAGGCCACGAA
CCCCGTGCTCGAGATCGAGCCGGGCAAGCCTCTGATCGGCAGCGTCGCGC
CGAACCCGATCGACAGCCTGAGTGGCATCTCGGAGCTCTTGACGGACAAC
CGCGGGTCGATCGACAACATCTTCACGAACCTCGAGGGCATGACCCAGGA
CCTGCGCGATGGGCGCGGTCTCCTGGGCCGGTTGATGACCGACGAGGAGC
TGTCCGACGAGACTGCGGTCGCGATCGAGGAGTTCCGCGAGGTGGCCGAG
AACCTGCGCGAGCTGAGCGGGCGCATGACCAGTGGCGAGGGCACGATGGG
CAAGCTGTTCGCGGACGACACGCTGTACACGAACCTGCAGACGACGGTCG
ACGGCCTGGCCGACCTGACCGAGGGGCTGCAGAACGGCGAGGGGATCGCG
GGCAAGCTCTTGAACGACGACGCCCTCGCCGGCGAGCTCGATCGCGCGGT
GCGCAACTTCACGGCGGTGTCGGACGACCTGCGCGCGGGCAAGGGCACGC
TCGGCAAGCTGCTCGCGGACGGCACGACGGCGGACAACATCGAGCTGATC
TCCGGCGACCTGCGCACGATCACCAAGCAGATCACCGAGGGCCAGGGCAC
GCTCGGCCAGCTGTGGGCGAACCAGGAGCTGTACGACAACCTGCTCGGCT
TCAGCGAGACGATGGAGGCGGTCATGCTGGACGTGCAGAACGGCGAGGGC
ACGATCGCCAAGCTGCTGACCGACGACGAGCTCTACGAGGAGCTCTTGAC
CGGCGTCAAGCTGCTCAACCGCAGCCTCGAGGACTACCGCGAAGCTGCGC
CGGTCTCGACCTTCACGAACGTGCTGTTCAACGTCTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74215:191..1081-

>mRNA_M-pyrifera_M_contig74215.17578.1 ID=mRNA_M-pyrifera_M_contig74215.17578.1|Name=mRNA_M-pyrifera_M_contig74215.17578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1782bp|location=Sequence derived from alignment at M-pyrifera_M_contig74215:191..1081- (Macrocystis pyrifera P11B4 male)
ACCCTGCTCGGGGGGCGCCACGTCAGCATCCTACCGGGCCAGGCCACGAA
CCCCGTGCTCGAGATCGAGCCGGGCAAGCCTCTGATCGGCAGCGTCGCGC
CGAACCCGATCGACAGCCTGAGTGGCATCTCGGAGCTCTTGACGGACAAC
CGCGGGTCGATCGACAACATCTTCACGAACCTCGAGGGCATGACCCAGGA
CCTGCGCGATGGGCGCGGTCTCCTGGGCCGGTTGATGACCGACGAGGAGC
TGTCCGACGAGACTGCGGTCGCGATCGAGGAGTTCCGCGAGGTGGCCGAG
AACCTGCGCGAGCTGAGCGGGCGCATGACCAGTGGCGAGGGCACGATGGG
CAAGCTGTTCGCGGACGACACGCTGTACACGAACCTGCAGACGACGGTCG
ACGGCCTGGCCGACCTGACCGAGGGGCTGCAGAACGGCGAGGGGATCGCG
GGCAAGCTCTTGAACGACGACGCCCTCGCCGGCGAGCTCGATCGCGCGGT
GCGCAACTTCACGGCGGTGTCGGACGACCTGCGCGCGGGCAAGGGCACGC
TCGGCAAGCTGCTCGCGGACGGCACGACGGCGGACAACATCGAGCTGATC
TCCGGCGACCTGCGCACGATCACCAAGCAGATCACCGAGGGCCAGGGCAC
GCTCGGCCAGCTGTGGGCGAACCAGGAGCTGTACGACAACCTGCTCGGCT
TCAGCGAGACGATGGAGGCGGTCATGCTGGACGTGCAGAACGGCGAGGGC
ACGATCGCCAAGCTGCTGACCGACGACGAGCTCTACGAGGAGCTCTTGAC
CGGCGTCAAGCTGCTCAACCGCAGCCTCGAGGACTACCGCGAAGCTGCGC
CGGTCTCGACCTTCACGAACGTGCTGTTCAACGTCTTCTGAACCCTGCTC
GGGGGGCGCCACGTCAGCATCCTACCGGGCCAGGCCACGAACCCCGTGCT
CGAGATCGAGCCGGGCAAGCCTCTGATCGGCAGCGTCGCGCCGAACCCGA
TCGACAGCCTGAGTGGCATCTCGGAGCTCTTGACGGACAACCGCGGGTCG
ATCGACAACATCTTCACGAACCTCGAGGGCATGACCCAGGACCTGCGCGA
TGGGCGCGGTCTCCTGGGCCGGTTGATGACCGACGAGGAGCTGTCCGACG
AGACTGCGGTCGCGATCGAGGAGTTCCGCGAGGTGGCCGAGAACCTGCGC
GAGCTGAGCGGGCGCATGACCAGTGGCGAGGGCACGATGGGCAAGCTGTT
CGCGGACGACACGCTGTACACGAACCTGCAGACGACGGTCGACGGCCTGG
CCGACCTGACCGAGGGGCTGCAGAACGGCGAGGGGATCGCGGGCAAGCTC
TTGAACGACGACGCCCTCGCCGGCGAGCTCGATCGCGCGGTGCGCAACTT
CACGGCGGTGTCGGACGACCTGCGCGCGGGCAAGGGCACGCTCGGCAAGC
TGCTCGCGGACGGCACGACGGCGGACAACATCGAGCTGATCTCCGGCGAC
CTGCGCACGATCACCAAGCAGATCACCGAGGGCCAGGGCACGCTCGGCCA
GCTGTGGGCGAACCAGGAGCTGTACGACAACCTGCTCGGCTTCAGCGAGA
CGATGGAGGCGGTCATGCTGGACGTGCAGAACGGCGAGGGCACGATCGCC
AAGCTGCTGACCGACGACGAGCTCTACGAGGAGCTCTTGACCGGCGTCAA
GCTGCTCAACCGCAGCCTCGAGGACTACCGCGAAGCTGCGCCGGTCTCGA
CCTTCACGAACGTGCTGTTCAACGTCTTCTGA
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