mRNA_M-pyrifera_M_contig74209.17575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74209.17575.1
Unique NamemRNA_M-pyrifera_M_contig74209.17575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A7X5WTN1_9ACTN (PIN domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTN1_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 3.860e-15
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPLA 126
            TVDA+HLAAADRLP P+ Y+TLD HQIPAAAALGF++VAPLA
Sbjct:   87 TVDAVHLAAADRLPRPVSYVTLDHHQIPAAAALGFDVVAPLA 128          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A6N7FL11_9ACTN (Ribonuclease VapC n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FL11_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-13
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPLAA 129
            T+DA+HLAAADRLP PLRY T DR QIPAAA LGFE++ PL A
Sbjct:   95 TIDAVHLAAADRLPRPLRYCTFDRRQIPAAAGLGFEVITPLMA 137          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A5Q2RMU9_9ACTN (Ribonuclease VapC n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RMU9_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAP 120
            TVDA+HLAAADRLP P+RYLT D  QIPAAAALGFE+V+P
Sbjct:   95 TVDAVHLAAADRLPRPVRYLTFDPQQIPAAAALGFEVVSP 134          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A349B9D6_9ACTN (Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B9D6_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 4.340e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAP 120
            + DAIHLAAA+RLPAP+RYLT DR QIPAAA LGFE++AP
Sbjct:   96 STDAIHLAAAERLPAPVRYLTFDRRQIPAAAGLGFEVIAP 135          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A6G0A629_9ACTN (PIN domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A629_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 8.310e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPLA 126
            T DAIHLAAADRLP PLRYLTLDR QIPAA ALG ++ +P+A
Sbjct:   95 TTDAIHLAAADRLPRPLRYLTLDRRQIPAALALGLDVASPVA 136          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A2E9XC86_9ACTN (PINc domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XC86_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 3.330e-12
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPL 123
            TVDA+HLAAADRLP PL+YLT D HQIPAA +LGFE+++ +
Sbjct:   95 TVDALHLAAADRLPKPLKYLTFDSHQIPAALSLGFEVISQM 135          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A3M2GR83_ACTSX (PIN domain-containing protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GR83_ACTSX)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPLA 126
            TVDA+HLAAADRLP P+ +LT D  QIPAAAALGFE+V+P+A
Sbjct:  161 TVDAVHLAAADRLPRPVVWLTFDHRQIPAAAALGFEVVSPVA 202          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A2E7A4R0_9ACTN (PINc domain-containing protein n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E7A4R0_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 1.450e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELV 114
            TVDA+HLAAADRLP PL YLT D HQIPAA  LGFE+V
Sbjct:   95 TVDALHLAAADRLPQPLTYLTFDSHQIPAALGLGFEVV 132          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A2E2BAG3_9GAMM (PINc domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E2BAG3_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 2.710e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELV 114
            TVDA+HLAAADRLP PL Y+T D HQIPAA  LGFE+V
Sbjct:   96 TVDALHLAAADRLPQPLTYITFDSHQIPAALGLGFEVV 133          
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Match: A0A2E6DS34_9ACTN (PINc domain-containing protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A2E6DS34_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 3.910e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELV 114
            TVDA+HLAAADRLP PL YLT D HQIPAA  LGF++V
Sbjct:   95 TVDALHLAAADRLPRPLTYLTFDSHQIPAALGLGFDVV 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74209.17575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WTN1_9ACTN3.860e-1580.95PIN domain-containing protein n=1 Tax=Actinomyceti... [more]
A0A6N7FL11_9ACTN1.060e-1374.42Ribonuclease VapC n=1 Tax=Acidimicrobiia bacterium... [more]
A0A5Q2RMU9_9ACTN2.940e-1380.00Ribonuclease VapC n=1 Tax=Actinomarinicola tropica... [more]
A0A349B9D6_9ACTN4.340e-1377.50Ribonuclease VapC n=1 Tax=Acidimicrobiaceae bacter... [more]
A0A6G0A629_9ACTN8.310e-1376.19PIN domain-containing protein n=2 Tax=Bacteria Tax... [more]
A0A2E9XC86_9ACTN3.330e-1270.73PINc domain-containing protein n=2 Tax=Actinobacte... [more]
A0A3M2GR83_ACTSX1.100e-1173.81PIN domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2E7A4R0_9ACTN1.450e-1178.95PINc domain-containing protein n=4 Tax=Acidimicrob... [more]
A0A2E2BAG3_9GAMM2.710e-1176.32PINc domain-containing protein n=2 Tax=Bacteria Ta... [more]
A0A2E6DS34_9ACTN3.910e-1176.32PINc domain-containing protein n=2 Tax=Acidimicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74209contigM-pyrifera_M_contig74209:950..1081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.6492367-CDS-M-pyrifera_M_contig74209:949..10811622816640.6492367-CDS-M-pyrifera_M_contig74209:949..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74209 950..1081 -
1692278093.372829-CDS-M-pyrifera_M_contig74209:949..10811692278093.372829-CDS-M-pyrifera_M_contig74209:949..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74209 950..1081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74209.17575.1prot_M-pyrifera_M_contig74209.17575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74209 950..1081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74209.17575.1

>prot_M-pyrifera_M_contig74209.17575.1 ID=prot_M-pyrifera_M_contig74209.17575.1|Name=mRNA_M-pyrifera_M_contig74209.17575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
TVDAIHLAAADRLPAPLRYLTLDRHQIPAAAALGFELVAPLAA*
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mRNA from alignment at M-pyrifera_M_contig74209:950..1081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74209.17575.1 ID=mRNA_M-pyrifera_M_contig74209.17575.1|Name=mRNA_M-pyrifera_M_contig74209.17575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig74209:950..1081- (Macrocystis pyrifera P11B4 male)
ACCGTCGACGCCATCCATCTCGCAGCGGCCGACCGCCTGCCGGCCCCCCT GCGGTACCTCACCCTGGACCGCCACCAGATCCCGGCTGCGGCCGCCCTCG GCTTCGAACTCGTCGCCCCGCTCGCAGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74209:950..1081-

>mRNA_M-pyrifera_M_contig74209.17575.1 ID=mRNA_M-pyrifera_M_contig74209.17575.1|Name=mRNA_M-pyrifera_M_contig74209.17575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig74209:950..1081- (Macrocystis pyrifera P11B4 male)
ACCGTCGACGCCATCCATCTCGCAGCGGCCGACCGCCTGCCGGCCCCCCT
GCGGTACCTCACCCTGGACCGCCACCAGATCCCGGCTGCGGCCGCCCTCG
GCTTCGAACTCGTCGCCCCGCTCGCAGCCTGAACCGTCGACGCCATCCAT
CTCGCAGCGGCCGACCGCCTGCCGGCCCCCCTGCGGTACCTCACCCTGGA
CCGCCACCAGATCCCGGCTGCGGCCGCCCTCGGCTTCGAACTCGTCGCCC
CGCTCGCAGCCTGA
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