mRNA_M-pyrifera_M_contig74208.17573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74208.17573.1
Unique NamemRNA_M-pyrifera_M_contig74208.17573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A6I6AI73_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AI73_9PLAN)

HSP 1 Score: 267 bits (683), Expect = 6.600e-86
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 1
Query:   13 MRDLRMKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAPEKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIG 435
            MRDLRMKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGK QKT PEKEA VKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTD ATKEIGKKKGLWFVSLESTAIG
Sbjct:    1 MRDLRMKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKAQKTVPEKEAAVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDEATKEIGKKKGLWFVSLESTAIG 141          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A518A8F4_9PLAN (Leucine Rich repeats (2 copies) n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8F4_9PLAN)

HSP 1 Score: 194 bits (494), Expect = 1.290e-57
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQ-PTEGKEQKTAPEKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIGDAG 444
            MK KI+LSLAGLCL +GCP++N   +Q +Q+ +Q P   K+  TA E E   + DDPEAVKAFKALDAKMVT+DDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTD AT+EIGK+K LWFVSLESTAIGD G
Sbjct:    1 MKIKIMLSLAGLCLLTGCPSSNTTPEQTKQESQQTPDTAKKTPTAAE-EVKAELDDPEAVKAFKALDAKMVTTDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDVATEEIGKQKNLWFVSLESTAIGDQG 139          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A517XDT2_9PLAN (Internalin-A n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XDT2_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 1.850e-53
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAPEKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIGDAGVKNLADLQ 468
            MK ++ LSLAGLCL +GCP  + PS   ++             A +K A V+PD PEAVKAFK LDAK+  SDDGRVLILDLKGTNA+D DLKHLAGLPSLERLI+WGPNFTD +T+EIGKK  LWF+SLESTAIGD GVKNL+DLQ
Sbjct:    1 MKTRVFLSLAGLCLLTGCPGASTPSADPEKAATSAKSDPAPDAATQKPA-VEPDSPEAVKAFKDLDAKLGMSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDEGVKNLSDLQ 146          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A518IEF7_9PLAN (Internalin-A n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IEF7_9PLAN)

HSP 1 Score: 167 bits (423), Expect = 4.410e-47
Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANN-PPSDQGQQKQEQPTEGKEQKTAPEKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSL 417
            MK K +LSL GLCL +GCP+++ PP+   Q+K      G++ K A +K A  +PD PEAV+AFK LDAKMV SDDGRVLILDLKGTNAKDEDLKHL GLPSLERL IWGPNFTD AT+EIGKKK LWF++L
Sbjct:    1 MKMKAILSLVGLCLLTGCPSSSAPPTPASQEKSSSTGAGEQAKDAKQKSAA-EPDSPEAVQAFKDLDAKMVLSDDGRVLILDLKGTNAKDEDLKHLEGLPSLERLTIWGPNFTDTATEEIGKKKKLWFLNL 130          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A517VG69_9PLAN (Leucine Rich repeats (2 copies) n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VG69_9PLAN)

HSP 1 Score: 164 bits (416), Expect = 4.660e-46
Identity = 90/142 (63.38%), Postives = 107/142 (75.35%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANN-PPSDQGQQKQEQPTEGKEQKTAPEKE-ATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIGDAGV 447
            MK ++ LSLA L L +GCP+ + PP+D  +      TE   Q  A +K+ A  +PD PEAVK FK LDAK+  S DGRVLILDLKGTNAKDEDL+HL+GLPSLERLI+WGP FTD AT+EIGKK  LWF+SLESTA+GD GV
Sbjct:    1 MKTRVFLSLAALSLLTGCPSTSTPPADPEKAATSAKTE---QSPATDKQRAAAEPDSPEAVKVFKDLDAKLGMSKDGRVLILDLKGTNAKDEDLRHLSGLPSLERLILWGPQFTDVATEEIGKKNKLWFLSLESTAVGDEGV 139          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A517WZC6_9PLAN (Internalin-A n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZC6_9PLAN)

HSP 1 Score: 161 bits (407), Expect = 1.010e-44
Identity = 86/141 (60.99%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAPEKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIGDAGVK 450
            MK K +LSL GLCL SGCP +N       + +    E         +    KPD PEAV+AFK L A M  SDDGRVLILDLKG+ AKDEDLKHLAGLPSLERL IWGP+FTD AT+EI KKK LW++++ESTAIGD GVK
Sbjct:    1 MKMKAILSLLGLCLLSGCPDSNTSKTPDSKAKSTSAEESHSNKQTNEAVQPKPDAPEAVQAFKDLGATMKLSDDGRVLILDLKGSTAKDEDLKHLAGLPSLERLTIWGPDFTDTATEEISKKKNLWYLNMESTAIGDEGVK 141          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A355GAF4_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GAF4_9PLAN)

HSP 1 Score: 159 bits (401), Expect = 7.560e-44
Identity = 85/131 (64.89%), Postives = 102/131 (77.86%), Query Frame = 1
Query:   28 MKNKILLSLAGLCLFSGCPANN-PPSDQGQQKQEQPTEGKEQKTAPEKEATVK-PDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVS 414
            MK ++ LSLA +CL +GCP  + PP+D    ++   +E  +Q  A EK+     PD PEAVKAFK LDAK+  SDDGR+LILDLKGTNAKDEDLKHL+GLPSLERLI+WGPNFTD AT+EIGKKKGLWF+S
Sbjct:    1 MKTRVFLSLAAICLLTGCPGTSTPPADP---EKTVSSETSQQAPAAEKQQXXXXPDSPEAVKAFKELDAKLGLSDDGRILILDLKGTNAKDEDLKHLSGLPSLERLILWGPNFTDLATEEIGKKKGLWFLS 128          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A2E7RTU8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7RTU8_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 2.280e-6
Identity = 40/94 (42.55%), Postives = 47/94 (50.00%), Query Frame = 1
Query:  187 DDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLE-STAIGDAGVKNLADL 465
            DD EAVKA KAL A M T ++G V+ +D   + A D+DL HL GLP L  L I G                L FV    +T I D GV  LA L
Sbjct:   27 DDAEAVKALKALKAGMGTDENGSVIEVDFSNSQATDDDLVHLKGLPKLSTLFI-GSXXXXXXXXXXXXLTTLTFVDCTFNTKITDKGVSYLASL 119          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A3D4A1N5_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D4A1N5_9PLAN)

HSP 1 Score: 53.9 bits (128), Expect = 1.520e-5
Identity = 41/143 (28.67%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   37 KILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAPEKEATVKP---DDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFT-DAATKEIGKKKGLWFVSLESTAIGDAGVKN 453
            ++LL  A    F+ C  N   SD   + Q +    + +  +    + ++P   DDPE+VK  + +  +  T+DDG V  +D  G   +  DL  +AGLPS+E LI+ G + T D A + + +        L +  + ++GV N
Sbjct:    7 QLLLLYAVTTFFALCGCNGEESDDQSETQRKNAIQQSEDISTNAPSVIEPVADDDPESVKQIEDMYGEYKTNDDGNVTFVDFTGAFGESVDLSIMAGLPSVEHLIVIGKSVTGDDALENLSE-----LTRLRTLNVSESGVTN 144          
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Match: A0A2E4M645_9BACT (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E4M645_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 4.230e-5
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   37 KILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAPEKEATVKP---DDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHLAGLPSLERLIIWGPNFT-DAATKEIGKKKGLWFVSLESTAIGDAGVKN 453
            ++LL  A    F+ C  N   SD   + Q +    + +  +      ++P   DDPE+VK  + +  +  T+DDG V  +D  G   +  DL  +AGLPS+E LI+ G + T D A + + +        L +  + ++GV N
Sbjct:    7 QLLLLYAVTTFFALCGCNGEESDDQAETQRKNAVQQSEDISTNAPPVIEPVADDDPESVKQIEDMYGEYKTNDDGNVTFVDFTGAFGEPVDLSIMAGLPSVEHLIVIGKSVTGDDALENLSE-----LTRLRTLNVSESGVTN 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74208.17573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6I6AI73_9PLAN6.600e-8697.16Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A518A8F4_9PLAN1.290e-5775.00Leucine Rich repeats (2 copies) n=3 Tax=Gimesia pa... [more]
A0A517XDT2_9PLAN1.850e-5366.67Internalin-A n=7 Tax=Planctomycetaceae TaxID=126 R... [more]
A0A518IEF7_9PLAN4.410e-4767.94Internalin-A n=2 Tax=Gimesia TaxID=1649453 RepID=A... [more]
A0A517VG69_9PLAN4.660e-4663.38Leucine Rich repeats (2 copies) n=1 Tax=Gimesia al... [more]
A0A517WZC6_9PLAN1.010e-4460.99Internalin-A n=2 Tax=Gimesia aquarii TaxID=2527964... [more]
A0A355GAF4_9PLAN7.560e-4464.89Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E7RTU8_9PLAN2.280e-642.55Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3D4A1N5_9PLAN1.520e-528.67Uncharacterized protein (Fragment) n=2 Tax=Plancto... [more]
A0A2E4M645_9BACT4.230e-528.67Uncharacterized protein n=2 Tax=Planctomycetia Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74208contigM-pyrifera_M_contig74208:612..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score193.4
Seed ortholog evalue8e-47
Seed eggNOG ortholog344747.PM8797T_26210
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Leucine-rich repeat
EggNOG OGs2IZW9@203682,COG4886@1,COG4886@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.562005-UTR-M-pyrifera_M_contig74208:611..6231622816640.562005-UTR-M-pyrifera_M_contig74208:611..623Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74208 612..623 +
1692278093.3418348-UTR-M-pyrifera_M_contig74208:611..6231692278093.3418348-UTR-M-pyrifera_M_contig74208:611..623Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74208 612..623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.576054-CDS-M-pyrifera_M_contig74208:623..10821622816640.576054-CDS-M-pyrifera_M_contig74208:623..1082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74208 624..1082 +
1692278093.3559322-CDS-M-pyrifera_M_contig74208:623..10821692278093.3559322-CDS-M-pyrifera_M_contig74208:623..1082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74208 624..1082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74208.17573.1prot_M-pyrifera_M_contig74208.17573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74208 624..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74208.17573.1

>prot_M-pyrifera_M_contig74208.17573.1 ID=prot_M-pyrifera_M_contig74208.17573.1|Name=mRNA_M-pyrifera_M_contig74208.17573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MRDLRMKNKILLSLAGLCLFSGCPANNPPSDQGQQKQEQPTEGKEQKTAP
EKEATVKPDDPEAVKAFKALDAKMVTSDDGRVLILDLKGTNAKDEDLKHL
AGLPSLERLIIWGPNFTDAATKEIGKKKGLWFVSLESTAIGDAGVKNLAD
LQD
back to top

mRNA from alignment at M-pyrifera_M_contig74208:612..1082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74208.17573.1 ID=mRNA_M-pyrifera_M_contig74208.17573.1|Name=mRNA_M-pyrifera_M_contig74208.17573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig74208:612..1082+ (Macrocystis pyrifera P11B4 male)
CAATTGAAATCTATGAGGGATCTCAGGATGAAGAATAAGATATTACTTTC TCTGGCAGGTTTGTGTCTGTTTAGCGGCTGCCCCGCTAACAATCCTCCGT CTGATCAGGGACAGCAGAAACAGGAACAGCCGACAGAAGGTAAAGAACAG AAAACCGCACCAGAGAAAGAAGCGACGGTAAAACCCGATGATCCTGAAGC GGTCAAAGCCTTCAAAGCTCTGGATGCGAAAATGGTAACCTCCGACGATG GGCGGGTGCTCATTCTCGATTTGAAAGGGACCAACGCCAAGGACGAAGAC CTGAAGCATCTGGCTGGTTTGCCTTCCCTGGAACGGCTGATTATCTGGGG GCCAAATTTTACCGATGCAGCGACCAAAGAGATCGGTAAAAAGAAGGGGC TCTGGTTTGTCAGTCTGGAAAGCACGGCCATTGGAGATGCAGGGGTCAAA AATCTTGCCGACCTGCAGGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74208:612..1082+

>mRNA_M-pyrifera_M_contig74208.17573.1 ID=mRNA_M-pyrifera_M_contig74208.17573.1|Name=mRNA_M-pyrifera_M_contig74208.17573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig74208:612..1082+ (Macrocystis pyrifera P11B4 male)
ATGAGGGATCTCAGGATGAAGAATAAGATATTACTTTCTCTGGCAGGTTT
GTGTCTGTTTAGCGGCTGCCCCGCTAACAATCCTCCGTCTGATCAGGGAC
AGCAGAAACAGGAACAGCCGACAGAAGGTAAAGAACAGAAAACCGCACCA
GAGAAAGAAGCGACGGTAAAACCCGATGATCCTGAAGCGGTCAAAGCCTT
CAAAGCTCTGGATGCGAAAATGGTAACCTCCGACGATGGGCGGGTGCTCA
TTCTCGATTTGAAAGGGACCAACGCCAAGGACGAAGACCTGAAGCATCTG
GCTGGTTTGCCTTCCCTGGAACGGCTGATTATCTGGGGGCCAAATTTTAC
CGATGCAGCGACCAAAGAGATCGGTAAAAAGAAGGGGCTCTGGTTTGTCA
GTCTGGAAAGCACGGCCATTGGAGATGCAGGGGTCAAAAATCTTGCCGAC
CTGCAGGATATGAGGGATCTCAGGATGAAGAATAAGATATTACTTTCTCT
GGCAGGTTTGTGTCTGTTTAGCGGCTGCCCCGCTAACAATCCTCCGTCTG
ATCAGGGACAGCAGAAACAGGAACAGCCGACAGAAGGTAAAGAACAGAAA
ACCGCACCAGAGAAAGAAGCGACGGTAAAACCCGATGATCCTGAAGCGGT
CAAAGCCTTCAAAGCTCTGGATGCGAAAATGGTAACCTCCGACGATGGGC
GGGTGCTCATTCTCGATTTGAAAGGGACCAACGCCAAGGACGAAGACCTG
AAGCATCTGGCTGGTTTGCCTTCCCTGGAACGGCTGATTATCTGGGGGCC
AAATTTTACCGATGCAGCGACCAAAGAGATCGGTAAAAAGAAGGGGCTCT
GGTTTGTCAGTCTGGAAAGCACGGCCATTGGAGATGCAGGGGTCAAAAAT
CTTGCCGACCTGCAGGAT
back to top