mRNA_M-pyrifera_M_contig74193.17568.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74193.17568.1
Unique NamemRNA_M-pyrifera_M_contig74193.17568.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74193.17568.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.420e-27
Identity = 86/200 (43.00%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:    7 GASPGPYEACFEGLIDSGCIAGLALLDA-RGSPLYGKRVDNRLP--PLGGGDGDRLV--------------SPPEGKQLVSNPLSLLSPPAQPPSSFLTRPLPHTPPIHPSTASPCPPFSRGALLRSPMTQ--VAAVKSLTAD--GICGMDR---LLCTGVPFRVFGGTPLGVYAVGPGRRVGMIVRALHRVGFLVVFYR 534
            G+    Y+A F+GL+ SGCIAGLALLDA RG PLY  R+D+RLP  P                        +  +GK++V                              +      P  R  L+ S   Q  VAAVKSLT D   IC       L C GVPFRVFGGTPLG+YAVGPGRRVG++VRAL RVGFLVV YR
Sbjct:   80 GSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVG-----------------------------ARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYR 250
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74193.17568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE1.420e-2743.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74193contigM-pyrifera_M_contig74193:119..832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons2
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.3709724-CDS-M-pyrifera_M_contig74193:118..4541622816640.3709724-CDS-M-pyrifera_M_contig74193:118..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74193 119..454 -
1692278093.2744472-CDS-M-pyrifera_M_contig74193:118..4541692278093.2744472-CDS-M-pyrifera_M_contig74193:118..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74193 119..454 -
1622816640.3827372-CDS-M-pyrifera_M_contig74193:634..8321622816640.3827372-CDS-M-pyrifera_M_contig74193:634..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74193 635..832 -
1692278093.2837143-CDS-M-pyrifera_M_contig74193:634..8321692278093.2837143-CDS-M-pyrifera_M_contig74193:634..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74193 635..832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74193.17568.1prot_M-pyrifera_M_contig74193.17568.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74193 119..832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74193.17568.1

>prot_M-pyrifera_M_contig74193.17568.1 ID=prot_M-pyrifera_M_contig74193.17568.1|Name=mRNA_M-pyrifera_M_contig74193.17568.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
GEGASPGPYEACFEGLIDSGCIAGLALLDARGSPLYGKRVDNRLPPLGGG
DGDRLVSPPEGKQLVSNPLSLLSPPAQPPSSFLTRPLPHTPPIHPSTASP
CPPFSRGALLRSPMTQVAAVKSLTADGICGMDRLLCTGVPFRVFGGTPLG
VYAVGPGRRVGMIVRALHRVGFLVVFYR
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mRNA from alignment at M-pyrifera_M_contig74193:119..832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74193.17568.1 ID=mRNA_M-pyrifera_M_contig74193.17568.1|Name=mRNA_M-pyrifera_M_contig74193.17568.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig74193:119..832- (Macrocystis pyrifera P11B4 male)
GGAGAAGGAGCTTCACCTGGCCCGTACGAGGCATGCTTCGAGGGTCTCAT
CGACAGTGGCTGCATCGCAGGCCTCGCTCTGCTGGACGCCCGCGGGAGCC
CGCTGTACGGAAAGCGCGTCGACAATCGGTTGCCCCCCTTGGGCGGAGGG
GACGGCGACCGCCTGGTGTCCCCCCCGGAAGGAAAGCAGTTGGTGAGCGT
GCCGGACGCGGAGTTCCCCCCCCCCCCCCCGCCCCCCCCCGCTTCTCTCG
TCTTCATCCAACCCCCGTTTCGTCGTTTTGGTCGAGAAATATGCCCCCCC
CGCTCCCCTCTCCTCTCTTCCCCTCCCCGCCCGCCTCCGCTCTCAACGGG
AGTATGGCGCGCATCGATGACACTGCAGAATCCCCTCTCTCTCCTCTCCC
CCCCCGCCCAACCCCCTTCCTCCTTCCTCACCCGCCCTCTACCCCACACC
CCACCCATACACCCCTCCACTGCCTCCCCATGCCCTCCTTTCTCGCGGGG
CGCGCTCTTACGCTCTCCCATGACACAGGTGGCGGCCGTGAAGAGCTTGA
CGGCTGATGGCATTTGCGGTATGGATCGCTTGTTGTGCACTGGAGTGCCG
TTTCGCGTTTTCGGAGGTACCCCGCTCGGTGTCTACGCGGTGGGCCCGGG
GAGGCGGGTCGGCATGATCGTGAGAGCACTCCACCGCGTGGGTTTTCTTG
TGGTGTTTTACAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74193:119..832-

>mRNA_M-pyrifera_M_contig74193.17568.1 ID=mRNA_M-pyrifera_M_contig74193.17568.1|Name=mRNA_M-pyrifera_M_contig74193.17568.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig74193:119..832- (Macrocystis pyrifera P11B4 male)
GGAGAAGGAGCTTCACCTGGCCCGTACGAGGCATGCTTCGAGGGTCTCAT
CGACAGTGGCTGCATCGCAGGCCTCGCTCTGCTGGACGCCCGCGGGAGCC
CGCTGTACGGAAAGCGCGTCGACAATCGGTTGCCCCCCTTGGGCGGAGGG
GACGGCGACCGCCTGGTGTCCCCCCCGGAAGGAAAGCAGTTGGTGAGCGG
AGAAGGAGCTTCACCTGGCCCGTACGAGGCATGCTTCGAGGGTCTCATCG
ACAGTGGCTGCATCGCAGGCCTCGCTCTGCTGGACGCCCGCGGGAGCCCG
CTGTACGGAAAGCGCGTCGACAATCGGTTGCCCCCCTTGGGCGGAGGGGA
CGGCGACCGCCTGGTGTCCCCCCCGGAAGGAAAGCAGTTGGTGAGCAATC
CCCTCTCTCTCCTCTCCCCCCCCGCCCAACCCCCTTCCTCCTTCCTCACC
CGCCCTCTACCCCACACCCCACCCATACACCCCTCCACTGCCTCCCCATG
CCCTCCTTTCTCGCGGGGCGCGCTCTTACGCTCTCCCATGACACAGGTGG
CGGCCGTGAAGAGCTTGACGGCTGATGGCATTTGCGGTATGGATCGCTTG
TTGTGCACTGGAGTGCCGTTTCGCGTTTTCGGAGGTACCCCGCTCGGTGT
CTACGCGGTGGGCCCGGGGAGGCGGGTCGGCATGATCGTGAGAGCACTCC
ACCGCGTGGGTTTTCTTGTGGTGTTTTACAGGAATCCCCTCTCTCTCCTC
TCCCCCCCCGCCCAACCCCCTTCCTCCTTCCTCACCCGCCCTCTACCCCA
CACCCCACCCATACACCCCTCCACTGCCTCCCCATGCCCTCCTTTCTCGC
GGGGCGCGCTCTTACGCTCTCCCATGACACAGGTGGCGGCCGTGAAGAGC
TTGACGGCTGATGGCATTTGCGGTATGGATCGCTTGTTGTGCACTGGAGT
GCCGTTTCGCGTTTTCGGAGGTACCCCGCTCGGTGTCTACGCGGTGGGCC
CGGGGAGGCGGGTCGGCATGATCGTGAGAGCACTCCACCGCGTGGGTTTT
CTTGTGGTGTTTTACAGG
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