mRNA_M-pyrifera_M_contig7416.17562.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7416.17562.1
Unique NamemRNA_M-pyrifera_M_contig7416.17562.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: D7FRB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB7_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 1.600e-121
Identity = 218/283 (77.03%), Postives = 232/283 (81.98%), Query Frame = 1
Query:   34 VVDLINKAKLEAKEQKIYLLIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLVDNGSAKGAQQDWSTLDGLRKVVLNTITSGPADISMVAVKFAESVVLACVGGRGLAPGASREGDKSVQRKLSPSHPFLLADTLDQAGHALARQMIGWLGTSDSDSGSVGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGAQHYTVLINALQNLATNRAALFADIVPALA 882
            VVDLINKAK+EAKEQKI+LL QVKE+C NRD S+LPEVIPMVAEFQ TDFNANCRKFVA FLREVVR+HP+HV LVVPVAS+LMHDS+T VKK A+LLANT YRPALQRLVDNGS KGAQQDWS L+GLRK VLNTI SGPADISMVA+KFAESVVLACVGGRGL P ASR GDKSVQR LSPSHPFLLADTLDQAGHALARQM+GWLG                                XXXXXXXX  FGAQHY++LINALQNLATNRAALFADIVPALA
Sbjct:    8 VVDLINKAKVEAKEQKIHLLAQVKEICFNRDRSLLPEVIPMVAEFQ-TDFNANCRKFVASFLREVVRSHPEHVGLVVPVASFLMHDSNTSVKKVAILLANTTYRPALQRLVDNGSVKGAQQDWSVLEGLRKAVLNTINSGPADISMVAIKFAESVVLACVGGRGLGPTASRGGDKSVQRDLSPSHPFLLADTLDQAGHALARQMVGWLGNGXXXXXXX-----------------------XXXXXXXXASFGAQHYSLLINALQNLATNRAALFADIVPALA 266          
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: A0A8C6GBD4_MUSSI (SYMPK_PTA1_N domain-containing protein n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6GBD4_MUSSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.310e-11
Identity = 57/215 (26.51%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   28 DNVVDLINKAKLEAKEQKIYLLIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLVDNGSAKGAQQD-WSTLDGLRKVVLNTITSGPADISMVAVKFAESVVLACVGGRGLAPGAS-------REGDKSVQRKLSPSHPFLLADTLDQAGHALARQMI 648
            + VVDL+N+A L   + KI +LIQV+EL +NR+ ++L   +  +  FQ  D +   RKFV GF+    +   + +  ++     L+ D +  V K A+L    +Y+ AL+ +V +   +  Q+  W  +  +   ++  + S    I   A+KF E +++       L+P  +       +E D S+ R +   HP++  + L + G A   Q++
Sbjct:   34 ERVVDLLNQAALITNDSKITVLIQVQELIINREPTLLDNFLDEIIAFQ-ADKSTEVRKFVIGFIETACKRDTELLLKLIANLHLLLRDENVNVVKKAILSMTQLYKVALRWMVKSPVIRDLQEACWGMVTSMAGEIILLLDSDNDGIRTHAIKFVEGLIVT------LSPRMADSVVPRRQEHDISLDR-IPRHHPYIQYNVLWEEGKAALEQLL 240          
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: A0A674BTZ5_SALTR (Symplekin n=4 Tax=Salmoninae TaxID=504568 RepID=A0A674BTZ5_SALTR)

HSP 1 Score: 75.5 bits (184), Expect = 6.020e-11
Identity = 56/194 (28.87%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   91 LIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLVDNGSAKGAQQD-WSTLDGLRKVVLNTITSGPADISMVAVKFAESVVLACVGGRGLAPGAS-------REGDKSVQRKLSPSHPFLLADTLDQAGHALARQMI 648
            +IQV+EL +N+D S+L   +  +  FQ TD +   RKFV GF+ E  +   + +  ++   + L+ D S  V K A+L    +Y+ ALQ  V + +    Q+  W  +  +++ VL  +      +   A+KF ES+++       L+P  S       +EGD S+  K+S  H ++  DTL   G +   Q++
Sbjct:    2 IIQVQELIINKDPSLLDNFLDEIIAFQ-TDKSMEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDESVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEDVLAMLEVDNDGVRTHAIKFTESLIIT------LSPRTSDSDTPKRQEGDISLD-KISKDHAYIRYDTLCGEGKSALEQLL 187          
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: A0A674BUJ4_SALTR (Symplekin n=3 Tax=Salmoninae TaxID=504568 RepID=A0A674BUJ4_SALTR)

HSP 1 Score: 75.5 bits (184), Expect = 6.080e-11
Identity = 56/194 (28.87%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   91 LIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLVDNGSAKGAQQD-WSTLDGLRKVVLNTITSGPADISMVAVKFAESVVLACVGGRGLAPGAS-------REGDKSVQRKLSPSHPFLLADTLDQAGHALARQMI 648
            +IQV+EL +N+D S+L   +  +  FQ TD +   RKFV GF+ E  +   + +  ++   + L+ D S  V K A+L    +Y+ ALQ  V + +    Q+  W  +  +++ VL  +      +   A+KF ES+++       L+P  S       +EGD S+  K+S  H ++  DTL   G +   Q++
Sbjct:   50 IIQVQELIINKDPSLLDNFLDEIIAFQ-TDKSMEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDESVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEDVLAMLEVDNDGVRTHAIKFTESLIIT------LSPRTSDSDTPKRQEGDISLD-KISKDHAYIRYDTLCGEGKSALEQLL 235          
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: A0A7S0REE9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0REE9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-5
Identity = 48/212 (22.64%), Postives = 91/212 (42.92%), Query Frame = 1
Query:   28 DNVVDLINKAKLEAK-EQKIYLLIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLVDNGS----AKGAQQDWSTLDGLRKVVLNTITSGPAD-ISMVAVKFAESVVLACVGGRGLAPGASREGDKSVQRKLSPSHPFLLADTLDQAGHALARQM 645
            + VV+L+N+  LE     +  L++ +KE+ +N+D  +LPE +P + E Q    NA+ R+ +AG L ++      H+  +       + D +  V K A+     +++ A       G+    +K  ++ W      +   +        D + + AVK  E++V+      G   GA+   D      L P+H  L    +   G  + R +
Sbjct:    9 EKVVELLNQCMLEQDGTAQAELMLDMKEILVNKDPQLLPEFLPKLLELQMYP-NASIRRNLAGMLEDIGLKMFTHLPEIFDTLRGFLDDEAPAVTKRALTAGGLLFKKAFTLAAQRGTGPVVSKEMKEIWDRAQQFKDRAVQLAGKASNDGVHLHAVKLVETLVMLYSAQPG---GANTNPDTIYPSTLDPNHKLLNGLKIANEGKEMFRTL 216          
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Match: A0A8J5HUG3_ZINOF (Uncharacterized protein n=8 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HUG3_ZINOF)

HSP 1 Score: 57.4 bits (137), Expect = 3.840e-5
Identity = 43/177 (24.29%), Postives = 84/177 (47.46%), Query Frame = 1
Query:   79 KIYLLIQVKELCMNRDSSILPEVIPMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSSTVVKKNAVLLANTIYRPALQRLV---------DNGSAKGAQQDWSTLDGLRKVVLNT-ITSGPADISMVAVKFAESVVLACVGGRGLAPGASREGDKSVQRKLS 579
            K+  L Q+KE+ +NRD+S+L E +  +AE Q ++  +  RKF+A  + ++   H   +  ++P     + D +  V + A+     ++   L++LV          N      +  W+ +   +  V++T   SG   + ++AVKF E++VL       ++    +E D  V   +S
Sbjct:   29 KLKQLRQLKEVLLNRDTSLLAEFVTRLAELQ-SERASPIRKFLAEMIGDIGSKHTDVLHEMLPCLISFLEDETPAVARQAITTGTALFGHVLEKLVIQACFFGLYSNDIDVSLKSSWTWMLQFKTTVVHTAFQSGSDGVRLLAVKFVETLVLLYTPDPYISSDPPQESDFDVGFNIS 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7416.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRB7_ECTSI1.600e-12177.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8C6GBD4_MUSSI2.310e-1126.51SYMPK_PTA1_N domain-containing protein n=1 Tax=Mus... [more]
A0A674BTZ5_SALTR6.020e-1128.87Symplekin n=4 Tax=Salmoninae TaxID=504568 RepID=A0... [more]
A0A674BUJ4_SALTR6.080e-1128.87Symplekin n=3 Tax=Salmoninae TaxID=504568 RepID=A0... [more]
A0A7S0REE9_9CHLO1.420e-522.64Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A8J5HUG3_ZINOF3.840e-524.29Uncharacterized protein n=8 Tax=Zingiber officinal... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7416contigM-pyrifera_M_contig7416:8023..12879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue6.8e-106
Seed eggNOG ortholog2880.D7FRB7
KEGG koko:K06100
KEGG Pathwayko03015,ko04530,map03015,map04530
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA polyadenylation
EggNOG OGsKOG1895@1,KOG1895@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons5
Model size1185
Cds size1185
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7416.17562.1prot_M-pyrifera_M_contig7416.17562.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7416 8023..12879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.8609936-CDS-M-pyrifera_M_contig7416:8022..81211622816639.8609936-CDS-M-pyrifera_M_contig7416:8022..8121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 8023..8121 +
1692278092.926808-CDS-M-pyrifera_M_contig7416:8022..81211692278092.926808-CDS-M-pyrifera_M_contig7416:8022..8121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 8023..8121 +
1622816639.8742976-CDS-M-pyrifera_M_contig7416:9263..93351622816639.8742976-CDS-M-pyrifera_M_contig7416:9263..9335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 9264..9335 +
1692278092.9406679-CDS-M-pyrifera_M_contig7416:9263..93351692278092.9406679-CDS-M-pyrifera_M_contig7416:9263..9335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 9264..9335 +
1622816639.8875892-CDS-M-pyrifera_M_contig7416:10342..104831622816639.8875892-CDS-M-pyrifera_M_contig7416:10342..10483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 10343..10483 +
1692278092.949179-CDS-M-pyrifera_M_contig7416:10342..104831692278092.949179-CDS-M-pyrifera_M_contig7416:10342..10483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 10343..10483 +
1622816639.897856-CDS-M-pyrifera_M_contig7416:11216..113261622816639.897856-CDS-M-pyrifera_M_contig7416:11216..11326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 11217..11326 +
1692278092.9584687-CDS-M-pyrifera_M_contig7416:11216..113261692278092.9584687-CDS-M-pyrifera_M_contig7416:11216..11326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 11217..11326 +
1622816639.9148562-CDS-M-pyrifera_M_contig7416:12116..128791622816639.9148562-CDS-M-pyrifera_M_contig7416:12116..12879Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 12117..12879 +
1692278092.9683108-CDS-M-pyrifera_M_contig7416:12116..128791692278092.9683108-CDS-M-pyrifera_M_contig7416:12116..12879Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 12117..12879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7416.17562.1

>prot_M-pyrifera_M_contig7416.17562.1 ID=prot_M-pyrifera_M_contig7416.17562.1|Name=mRNA_M-pyrifera_M_contig7416.17562.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=395bp
MSSSSSKLLDNVVDLINKAKLEAKEQKIYLLIQVKELCMNRDSSILPEVI
PMVAEFQQTDFNANCRKFVAGFLREVVRAHPQHVSLVVPVASYLMHDSST
VVKKNAVLLANTIYRPALQRLVDNGSAKGAQQDWSTLDGLRKVVLNTITS
GPADISMVAVKFAESVVLACVGGRGLAPGASREGDKSVQRKLSPSHPFLL
ADTLDQAGHALARQMIGWLGTSDSDSGSVGSGVGGGVASAGANATAGTAG
GGAAKVSGWGSGFGAQHYTVLINALQNLATNRAALFADIVPALASALESV
NGNGNGRGKAKAGVAGKKGPAATAVVPKGLRDAGGSLRSACLKLLKVAPG
PSKSVQRLAVAAALSGSDGEAKAAVDGNATLKGRIKLPVRVRERP
back to top

mRNA from alignment at M-pyrifera_M_contig7416:8023..12879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7416.17562.1 ID=mRNA_M-pyrifera_M_contig7416.17562.1|Name=mRNA_M-pyrifera_M_contig7416.17562.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4857bp|location=Sequence derived from alignment at M-pyrifera_M_contig7416:8023..12879+ (Macrocystis pyrifera P11B4 male)
ATGTCCTCCTCCTCGAGTAAGCTGCTGGACAATGTGGTCGACCTTATCAA CAAAGCAAAGCTGGAAGCGAAGGAACAAAAGATATATCTCCTCATTCAGG TGTGACACCCATCGATGTCGCCGAAATGGTTTGTTCCTGAAGATTGAGGT CGAAGCCTTCCTTTTACTTGACTTGTTTTATCATACTCGTAGCGTAGCGA CCCGAAAGACCAGAGGGTTTCAATTCTGGCGGCGGCGCACGACGCTTTGC TGCCGACTTTCGCGGGCGGGCGGGCACAGCAGCACCAGGGTCGTACGCAG TATGCAGGGGCTGGTGCTTGCCGTCCGTGTTATGTATAGTCGGGTCATGT TGCCTGTCTTGCGTACATACTCAGCTTCGCTGCCCACGCTTCATGGATCA AATACTCGTAGCACTAGCGGTACGAATCGTAGACTGCTGTACTGCTGTCT GCTTTGAGCTTGGGAGTCTAATTATATTATACCTGGTATGTGATCTGCCT CTGCCAGGTACGTGTCTACATCAACAGCAGCTGCTGCTCTCGCACATTAT CATACCTGGTAGCTGGTACTGCTTTAGGTCTAAGAGTGGATTCGCTCGTC TCGACTGTCGAAGACTCAACCTCACGAAGCCTTGTGATACAAATCAACCT TTCCCAACGGCGTCGCGCAGAAAAGGTATCGTGTCAAAAGAGCTCTACCA CGTACCTGGTACGAGATATGCCAGGTACCAGTCGCTGGCGTGATGCCTTT ATAAAGCACATCACCTTACCCAGCTGTCTGACCTCTGCCCCTCTCAGGCG GCCAGCATCGACGCCGACTGTCACCCTGCCCCACCCATTCCGACAAGACA TGAAATTCCGAACTGCTGCTATTTTGAACCGTGTACGTATACGACTTGGC CCAGCTTCGACATAATTGTTGTATGTAAGTATGCCTGGCCTTCTAACCTT TTTACTATTGCACTGCTGTACACAAACATGTGTTTGACTCTAATTCCAAG TATTTTGTCCCCAAAACGGGAGCGCGGTCCTAAAGGATCTATTATCCCTA ACCCCGACCGCCTGCGACTGCAGTTCTCAAAATGAAGCGGAGTTCGTCTG CAGCATCAGACCACTTCGTCCAAAGCTGGGCTGCTCTGCTTTTTTTCCCT ATTTTTTTCACGTACATGTATACCGTCCCCCGGGGGTCCTGCTGCTATAG ACTGTTACCTAATGCCGTTGTACCTGGTACATACAATTCAGGTGAAAGAG CTTTGCATGAACCGGGACAGCTCCATCCTGCCAGAAGTCATCCCGATGGT GGCCGAATTTCAGGTGCGTATATAGTGATCTGGTGATGTGGTGACGATCA ACCTCAAGGCCGACAGCGCTTGGGTTCAGAAATCAAAGGTCGTTCGGAAG GGCATGAGTCAATCGGTTTTGATATGATGCCGAATACCAACCTATCGGTA GATCGCCTACCGTTCGTGCAAGGAAGGGGGAAAGACAATATAGCAGTACT GGTGCACCAACAGTACAACAAATCGTGCTGGACGATAACTTTCATATTAT CAATATGTTTCCTCTACACACATGATGTAGATGCCGGTTGTGAACGATCG ACTCGCGCTTTGGTTGTGATTTATGGTCGCGCGCATCGGTGACTGCCTGA AAGGTAAGGCAGGTTGGACTTGAGAACTGCCGACCTGTTAGCAGCAGGAC TCTGCTCAAGCTGACTACAGCATTAGTGCAGGCAGCTGTTCTGATTCGCA GGCGTATAAAAGCTAGCCTCCGAATAGAGCTGCTCTTGACTTCGCTGAGA CGTTTCGTATCGAAATCGGACTTAGCCCCCCACCGCGTTCACGGCCATAT AGACATGTGAAGTTGTACAGCAACGCTGCTTTTCGCAACGAGCGACACTC TAACGTATCCCAACATCCCAACGTATATTTTGGCACGATGAACGCCGGAG CCGCAGTAACGATACCAACAGTATGACAACATTGGACTCAACTGCCGTAC TCGTACACTTCGAAGTATATGAAAAGCTCCCTGCGTTTATCGATGGCCGT GTTGGGCAAATACTCTTCGGCGGAGGAGTAGACTGCCACGAACCCCTGTA CATAGAGCACATCGGCCACAGACCTCGACGGCACGCCTGCCCTTTCGCAC TATTTCGGGCATTATTCCAGGTTCATCGGTAGTCCTGCTGTATTTTCATA CACAGGTACGTACCCAGCTGGTGTTTCATCTTTCCATGCCGACCGAATCC TGCTCGCGACCGCCACCTCCCACGATTATTTTTGTACCGGTATTGCTGTT CGTGTGCCTCTTCTGGGGAGCAGACGGACTTCAACGCCAATTGCCGCAAG TTTGTTGCGGGCTTCCTGCGAGAAGTGGTGAGAGCGCACCCGCAGCACGT GAGCTTGGTGGTTCCCGTGGCGTCGTACTTGATGCACGACAGCAGCACCG TCGTCAAGAAGGTGCAGTGCGCCCGCTATACGTGCTGCTTATATATACCT GATATTTGACAGCATTGTAACCACGTATTGCAAAGTTGAGCACAACATCG ACCGGTTCGGTAGAATTCACGCCTTACGCTAACTTGGTTGTAGCAATGAG TAAGGCCTATTGAATACCTGCTTCACTTGGTGTTTCGGTAACCTGTCGCA TCGTATTATGTTCGTACGGAAAATCGGTTCGGTACTTGCTTCCTGTGCGA TACATTCGTACGGTACTTCCGCTTCAAGGACGAGTAGTTTTTCTCGTTGG CGTTTTCGTGGTGCCTTGTTAGCCTTGCCTTGGGGAATCGCTCGGCCCGA ATTCTCAGCCTGCGTGTACTTTTAGTTCCACCCAGCGGGTGCTAGCCGAT ACTTGACTGGTCACGTCCATGCAAGCTTCGAGTCGAGCCTTTTTTTTTAC TGCTATTTTTGCCATCTTTACCAACTGTTTTCCCATGGCCGTGTGACGTT GAGACTAGTGTATGCATGCCCACTGTTTTGCTTGTTCTTTATCATTGCCA GCAGTACGTTTCTCGGTTGCGCAAACCTTTGATTTTTTTTGCTTCGTGGC GGCCAGGATGCTGTTCTTGCTGGGCAACACATGTACAAGATTAAGGTACC TGGTACCAAGTGTTGTTGTTTGGCTTGGTCTTCACTGACTACAGCGGTAT ATTACCCGCCTGCCCAAACCTTGATTTATATTCATGTCGGCCAGAACGCC GTCCTCCTGGCCAACACCATCTATAGACCTGCGCTGCAGCGGCTGGTAGA CAACGGAAGCGCGAAAGGCGCTCAGCAGGACTGGTCAACTCTGGATGGGC TCAGGTTGGTTTTAGTATTTACTTGTTTGCCCTTCGCGCGCAAGGAAGTG CTGTCGGGGCCCTTGCCGTGCACGCGTTCAAGCGAGCCTGCCCGCACGGC TCCTCGTTTCCATCTCTCCCTTGGTACTGATACAGTCCTACAATACTCCC GTATGATGCCGTGGTGTTTGTCGGTATACTAATTGTGCGTTACATCCTTC GAATACCATTGTGATACGTATGTGTCTCCGGAAATGCGTGCCGGTATTTG CCTTTGCTCTATTTCAAGTACTTTGTGTACCTGGCGGTACTCTTTGTTGA TTTGATCTTCGAGAAGTATTTTTATTGCGTTTTGAACTTTCAATAGCTTA TCAAGGGGTCCGCAAACTATTGATTATAGAAAAAAAACCCATTGCATGCA GCGCAGAACTGGCTGTTCATAAGTAGGGCATCTGTACTCGTAGAGATATT CACAATAGCAGCTGTACGTACTGTATATTGAGCTCTGTTGTGTAATCAGT TACCATAAAGTAGTAGTATACTATTTTGAAGACGAAGACTTGTTTCCGCG AGGATGGCATTCCCGTTTACGCTGCGATGACGGATGGTAAGCACGTTCGA TCAACGCCACTTCGTAATCATGGAACCTACTGGTAAAAAATGCCCAAAAT AGCCGGCCACCTTATCAACGCAGTTGCGCGCGCACATCGAACGTGACGAG CCGAGACACGCCACCCCCAGCTGTGATACACTTGACACCGAAACGTCGGT CGCATCATATCCTCGCCCCCCCCTCCTTGTCTACCGCCATGCAGGAAAGT GGTGCTGAACACGATCACCTCGGGACCTGCGGACATCTCCATGGTGGCCG TTAAGTTCGCGGAGAGCGTGGTCCTCGCGTGCGTCGGGGGGCGCGGGCTC GCTCCTGGCGCCTCGCGCGAGGGGGACAAGTCCGTCCAAAGGAAGCTCAG CCCCTCGCACCCTTTCCTCCTGGCGGACACGCTTGACCAAGCCGGCCACG CCCTGGCGAGGCAAATGATTGGGTGGCTGGGAACCAGTGATAGTGATAGC GGTAGCGTTGGTAGTGGTGTTGGTGGTGGCGTTGCTAGCGCTGGCGCAAA CGCTACCGCGGGCACTGCTGGTGGCGGTGCGGCGAAGGTTTCCGGGTGGG GCTCGGGGTTCGGGGCGCAGCACTACACGGTGCTGATCAACGCTCTCCAG AACCTGGCCACCAACCGCGCCGCCCTGTTCGCCGACATCGTTCCCGCCCT CGCGTCCGCGCTAGAGAGCGTCAACGGCAACGGTAACGGTAGGGGGAAGG CAAAGGCGGGTGTCGCCGGCAAGAAAGGCCCCGCGGCGACCGCTGTAGTG CCCAAGGGGCTGCGAGACGCGGGGGGCTCGCTCAGGAGCGCCTGCCTTAA GCTGCTCAAGGTGGCCCCGGGGCCGAGCAAGAGCGTGCAGAGGCTCGCGG TGGCAGCTGCCCTGTCGGGGTCGGACGGGGAAGCGAAGGCGGCCGTGGAC GGTAACGCGACGCTGAAAGGACGCATTAAGCTGCCCGTTCGGGTCAGAGA ACGACCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7416:8023..12879+

>mRNA_M-pyrifera_M_contig7416.17562.1 ID=mRNA_M-pyrifera_M_contig7416.17562.1|Name=mRNA_M-pyrifera_M_contig7416.17562.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2370bp|location=Sequence derived from alignment at M-pyrifera_M_contig7416:8023..12879+ (Macrocystis pyrifera P11B4 male)
ATGTCCTCCTCCTCGAGTAAGCTGCTGGACAATGTGGTCGACCTTATCAA
CAAAGCAAAGCTGGAAGCGAAGGAACAAAAGATATATCTCCTCATTCAGA
TGTCCTCCTCCTCGAGTAAGCTGCTGGACAATGTGGTCGACCTTATCAAC
AAAGCAAAGCTGGAAGCGAAGGAACAAAAGATATATCTCCTCATTCAGGT
GAAAGAGCTTTGCATGAACCGGGACAGCTCCATCCTGCCAGAAGTCATCC
CGATGGTGGCCGAATTTCAGGTGAAAGAGCTTTGCATGAACCGGGACAGC
TCCATCCTGCCAGAAGTCATCCCGATGGTGGCCGAATTTCAGCAGACGGA
CTTCAACGCCAATTGCCGCAAGTTTGTTGCGGGCTTCCTGCGAGAAGTGG
TGAGAGCGCACCCGCAGCACGTGAGCTTGGTGGTTCCCGTGGCGTCGTAC
TTGATGCACGACAGCAGCACCGTCGTCAAGAAGCAGACGGACTTCAACGC
CAATTGCCGCAAGTTTGTTGCGGGCTTCCTGCGAGAAGTGGTGAGAGCGC
ACCCGCAGCACGTGAGCTTGGTGGTTCCCGTGGCGTCGTACTTGATGCAC
GACAGCAGCACCGTCGTCAAGAAGAACGCCGTCCTCCTGGCCAACACCAT
CTATAGACCTGCGCTGCAGCGGCTGGTAGACAACGGAAGCGCGAAAGGCG
CTCAGCAGGACTGGTCAACTCTGGATGGGCTCAGAACGCCGTCCTCCTGG
CCAACACCATCTATAGACCTGCGCTGCAGCGGCTGGTAGACAACGGAAGC
GCGAAAGGCGCTCAGCAGGACTGGTCAACTCTGGATGGGCTCAGGAAAGT
GGTGCTGAACACGATCACCTCGGGACCTGCGGACATCTCCATGGTGGCCG
TTAAGTTCGCGGAGAGCGTGGTCCTCGCGTGCGTCGGGGGGCGCGGGCTC
GCTCCTGGCGCCTCGCGCGAGGGGGACAAGTCCGTCCAAAGGAAGCTCAG
CCCCTCGCACCCTTTCCTCCTGGCGGACACGCTTGACCAAGCCGGCCACG
CCCTGGCGAGGCAAATGATTGGGTGGCTGGGAACCAGTGATAGTGATAGC
GGTAGCGTTGGTAGTGGTGTTGGTGGTGGCGTTGCTAGCGCTGGCGCAAA
CGCTACCGCGGGCACTGCTGGTGGCGGTGCGGCGAAGGTTTCCGGGTGGG
GCTCGGGGTTCGGGGCGCAGCACTACACGGTGCTGATCAACGCTCTCCAG
AACCTGGCCACCAACCGCGCCGCCCTGTTCGCCGACATCGTTCCCGCCCT
CGCGTCCGCGCTAGAGAGCGTCAACGGCAACGGTAACGGTAGGGGGAAGG
CAAAGGCGGGTGTCGCCGGCAAGAAAGGCCCCGCGGCGACCGCTGTAGTG
CCCAAGGGGCTGCGAGACGCGGGGGGCTCGCTCAGGAGCGCCTGCCTTAA
GCTGCTCAAGGTGGCCCCGGGGCCGAGCAAGAGCGTGCAGAGGCTCGCGG
TGGCAGCTGCCCTGTCGGGGTCGGACGGGGAAGCGAAGGCGGCCGTGGAC
GGTAACGCGACGCTGAAAGGACGCATTAAGCTGCCCGTTCGGGTCAGAGA
ACGACCGGAAAGTGGTGCTGAACACGATCACCTCGGGACCTGCGGACATC
TCCATGGTGGCCGTTAAGTTCGCGGAGAGCGTGGTCCTCGCGTGCGTCGG
GGGGCGCGGGCTCGCTCCTGGCGCCTCGCGCGAGGGGGACAAGTCCGTCC
AAAGGAAGCTCAGCCCCTCGCACCCTTTCCTCCTGGCGGACACGCTTGAC
CAAGCCGGCCACGCCCTGGCGAGGCAAATGATTGGGTGGCTGGGAACCAG
TGATAGTGATAGCGGTAGCGTTGGTAGTGGTGTTGGTGGTGGCGTTGCTA
GCGCTGGCGCAAACGCTACCGCGGGCACTGCTGGTGGCGGTGCGGCGAAG
GTTTCCGGGTGGGGCTCGGGGTTCGGGGCGCAGCACTACACGGTGCTGAT
CAACGCTCTCCAGAACCTGGCCACCAACCGCGCCGCCCTGTTCGCCGACA
TCGTTCCCGCCCTCGCGTCCGCGCTAGAGAGCGTCAACGGCAACGGTAAC
GGTAGGGGGAAGGCAAAGGCGGGTGTCGCCGGCAAGAAAGGCCCCGCGGC
GACCGCTGTAGTGCCCAAGGGGCTGCGAGACGCGGGGGGCTCGCTCAGGA
GCGCCTGCCTTAAGCTGCTCAAGGTGGCCCCGGGGCCGAGCAAGAGCGTG
CAGAGGCTCGCGGTGGCAGCTGCCCTGTCGGGGTCGGACGGGGAAGCGAA
GGCGGCCGTGGACGGTAACGCGACGCTGAAAGGACGCATTAAGCTGCCCG
TTCGGGTCAGAGAACGACCG
back to top