mRNA_M-pyrifera_M_contig7416.17561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7416.17561.1
Unique NamemRNA_M-pyrifera_M_contig7416.17561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7416.17561.1 vs. uniprot
Match: A0A6H5JST1_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JST1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.800e-36
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 3 
Query:    3 SSLSMGVLGTVKEIVQICLAVLVFSDRITLWKMVGLLLAMIGSLSYKVVRGKPSARASTGDGTKGDRQQGQNTGGAPGEGNPGSRLSYSAVSQQEVDEELRVFKYSNTEWELEGELEEFSSFD 371
            SSL+MGV GTVKEIVQI LAVLVF++++T + +VGL  A++GS+ YK+ R KPSAR   G G K  R+   N  G   + N G  + YSAVSQQEVDEELRVFKY NTEWELEGELEEFSSFD
Sbjct:  297 SSLTMGVFGTVKEIVQIVLAVLVFNEQVTWFNLVGLGWAIVGSMLYKISRAKPSARNGEGGGVKDARRPAHNAQGDE-KANAGVNMPYSAVSQQEVDEELRVFKYENTEWELEGELEEFSSFD 418
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BLAST of mRNA_M-pyrifera_M_contig7416.17561.1 vs. uniprot
Match: A0A7S2ANC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANC6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.180e-5
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 3 
Query:    3 SSLSMGVLGTVKEIVQICLAVLVFSDRITLWKMVGLLLAMIGSLSYKVVR 152
            SSL++GVLGT KE++QI +AVLVF D +T + ++GL LA+ G++ Y  VR
Sbjct:  277 SSLTLGVLGTSKELIQIVMAVLVFKDVVTWYNVIGLALAVGGTVIYNYVR 326
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7416.17561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JST1_9PHAE3.800e-3664.23TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2ANC6_9STRA8.180e-554.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7416contigM-pyrifera_M_contig7416:779..3704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3.6e-29
Seed eggNOG ortholog2880.D7FRB1
KEGG koko:K15280
KEGG TC2.A.7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.UDP-glucose transmembrane transport
EggNOG OGsCOG0697@1,KOG1443@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-26_002490.1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons4
Model size489
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7416.17561.1prot_M-pyrifera_M_contig7416.17561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7416 793..3598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.765402-UTR-M-pyrifera_M_contig7416:778..7921622816639.765402-UTR-M-pyrifera_M_contig7416:778..792Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7416 779..792 +
1692278092.8605728-UTR-M-pyrifera_M_contig7416:778..7921692278092.8605728-UTR-M-pyrifera_M_contig7416:778..792Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7416 779..792 +
1622816639.8239932-UTR-M-pyrifera_M_contig7416:3598..37041622816639.8239932-UTR-M-pyrifera_M_contig7416:3598..3704Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7416 3599..3704 +
1692278092.9149365-UTR-M-pyrifera_M_contig7416:3598..37041692278092.9149365-UTR-M-pyrifera_M_contig7416:3598..3704Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7416 3599..3704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.776574-CDS-M-pyrifera_M_contig7416:792..8281622816639.776574-CDS-M-pyrifera_M_contig7416:792..828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 793..828 +
1692278092.8731093-CDS-M-pyrifera_M_contig7416:792..8281692278092.8731093-CDS-M-pyrifera_M_contig7416:792..828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 793..828 +
1622816639.7869906-CDS-M-pyrifera_M_contig7416:1342..14941622816639.7869906-CDS-M-pyrifera_M_contig7416:1342..1494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 1343..1494 +
1692278092.8815875-CDS-M-pyrifera_M_contig7416:1342..14941692278092.8815875-CDS-M-pyrifera_M_contig7416:1342..1494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 1343..1494 +
1622816639.7988155-CDS-M-pyrifera_M_contig7416:2302..23871622816639.7988155-CDS-M-pyrifera_M_contig7416:2302..2387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 2303..2387 +
1692278092.8930678-CDS-M-pyrifera_M_contig7416:2302..23871692278092.8930678-CDS-M-pyrifera_M_contig7416:2302..2387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 2303..2387 +
1622816639.8096192-CDS-M-pyrifera_M_contig7416:3502..35981622816639.8096192-CDS-M-pyrifera_M_contig7416:3502..3598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 3503..3598 +
1692278092.90384-CDS-M-pyrifera_M_contig7416:3502..35981692278092.90384-CDS-M-pyrifera_M_contig7416:3502..3598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7416 3503..3598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7416.17561.1

>prot_M-pyrifera_M_contig7416.17561.1 ID=prot_M-pyrifera_M_contig7416.17561.1|Name=mRNA_M-pyrifera_M_contig7416.17561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MGVLGTVKEIVQICLAVLVFSDRITLWKMVGLLLAMIGSLSYKVVRGKPS
ARASTGDGTKGDRQQGQNTGGAPGEGNPGSRLSYSAVSQQEVDEELRVFK
YSNTEWELEGELEEFSSFDDRR*
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mRNA from alignment at M-pyrifera_M_contig7416:779..3704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7416.17561.1 ID=mRNA_M-pyrifera_M_contig7416.17561.1|Name=mRNA_M-pyrifera_M_contig7416.17561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2926bp|location=Sequence derived from alignment at M-pyrifera_M_contig7416:779..3704+ (Macrocystis pyrifera P11B4 male)
CGAGTAGCCTGTCGATGGGCGTCTTGGGCACGGTCAAAGAGATTGTGCAG
GTGAGACCGGTGCTGCTGTAGCTTCTTTTTTCGCGAGATGCTCCCGTCAC
GCCAGATTCGCCTTGATGTAGACCAGAGTCCTAGTGTTATCTGTTTTTTA
GCGAAGCGTTGCTATAGAGACAGCCAGCCATACTCGGGCTATCCAGTCTG
CAACGTTCTGTTAAGAGAGCGAAGTGGGCCTATAGCGGGGACCACTCCCG
AAGAGGTGCATGCATGCACGTCTGTGTCCATGGGGTCACTTGCTGCATCC
TTGTGTTTTGTGCATCTACCGCGTACTACGATTTTGTTTGCCCTTGTGCT
ACACCTGTTCGTTGGAGCGGACTCCCTGTTTGACTACCAAGTCAGCGCTG
ACTTGATTACGTGGGCTTGTTGACTGTATTCTTAGCCCGCGAAGGTGTGG
CTTCGGATTGAGACTGGTACGATTAGTCGTCTTTTCTTCATGTACTCTCC
CCGTGCTCGCAACTTGCAGAAAACGATCCCGCTTGTCCTCGTCGACCCGC
CGCCTTGAATTCAGATATGTTTAGCGGTGCTCGTGTTCAGCGACCGAATC
ACCCTCTGGAAGATGGTGGGGCTTCTCTTGGCAATGATTGGGAGCCTGAG
CTACAAGGTCGTCCGTGGAAAGCCGAGCGCCCGCGCTAGCACCGGGGACG
GAACTAAGGGAGATAGGCGAGGCGTTGCGGGTGTTACTGTAGCTGTGGTG
ATCGCTCTTATTTGTTTCGAATAGGTCCTGATAGTCGCCGCGACCCATCA
TCGGCGGCGATAGGGAAAGCGGTCGTCAACAGCGTTGCAACTCTTCTGCT
CTCGTGACTCTCGTGGACTGTAGCGGTCATGTTCGAAAGCGTGGTGTTTG
AAGACTTGCGTCTCGTCACAGCGGTGGTAGCTTTTGACTCTTCAGGTGTT
GAGTTTGCGAGATGGTCTCAGACCGCTCTGCTTTTCCCCCGAGTTGTCAC
GTTCCCCTGTGTCTACGTCGTGAGCCCGCTCGCCGGCTAGTTTCCAGCGG
AGCCATTGGTGCAGAATGATATTACACAGTTGGGCTTTTCTGAACAAAGC
AGGTTGCCCCGTCGGTGCTCTTTGTGCGCTCGTGCCCTTCGCAACTGCTT
TTTATGTGACGGCCTTTTATCTTAAGCCGCCACGTGAGAAGCGAGTTGGA
AGATAGCAAGATCACACGTGTGTTTCCTGCCTCAAGCACGTGGTTAAGTA
ATCAGAAAGACAGGTAGTTTTTTCCTTTGATAAGATACGAATTTCATCGG
AAGAGTTCCTTGTAGTAACACAGAACAACACGGAGTGGGCGTCGGTAGTA
GATAGATACGTTGCTGGCCTCACCCTTCCGGATGAACCTCCATCGCACCG
CGTGTCCGATCGCCACGGATCGACCGTGTATCCACGTCGAGCACACGGCG
GACGATCTAATCATTTGTTGTTTATGTCTTCTCATGGCCGCCGCTTTTAT
GTTGTTGCGATGCACCCAACGCAGACAACAAGGGCAGAATACAGGCGGGG
CGCCGGGAGAAGGCAACCCAGGATCAAGGCTGTCTTACTCGGCGGTTTCT
CAGCAGGAGGTATGATATTGATATTGCCGTATAACTGCTCGTAGTTGCAC
TTGTCGCGCCACGATATTTTACTGACTAGTTTCCGTGCTTGCAACGGAAC
GTGTTGCACAAAGGTGCGGGCTGGTGTAAGCAAAACAAAAAGAAGTGTCC
ACCATGAATGCTGCATGCAATAGCTACTCGAATGTCACGTACGTGGTATC
ATACTGACCGTAATTAACAGCGGAAGCGGATGGCAAAGCCAGTTTTTTGT
GTCAAGGGCCTAGGGCTGGCGCTAGCGGCGATATCGCGTCCCATCCAACC
ATAGGCCTTCATAAAGGTCTATAATACGAAGTCAAGTGTTTCCGCAGGAA
GAAAATATATATTTTTCCTTTTTATAAAAAAAAAGACGACTTCAGGTACT
CCAAGGCGTGTCCTTGAAAAGAGTTTTCGCATATATTCGACGAATTGAGT
GCGTAGGGTGGGATCATTCTTATGCAAAGTTGAGCAAAGCTTGTCCGCTC
TAAATCGATTTTATACTGAAAACAAGTTATTTCGAAAAGAACGGTGAAAA
CCGTGTTTTTTCCCACGAAAGCTCAGAAATTCACGCGTTTTTTTCGAATT
ATCACCCCTCCGCATAAGAGCGCGGAAGTTGTGTGCGAAGTTTCAGGGCC
TAACTAAAAAAGTGGCGTGAAAGTTCGATGTCGGCAACATTTCTGACGGA
ATCCCTGACCCAGTTACTTGTAAGTTTTACGTGACGATGCTCTTGTGTTT
GGTGTGCTTCAGCAGGGTGCTGCAAAGCCTGGCAGGCGGTGAATGGGACA
AATGAATCGGGAATGGTGTAGACCAAGGCGTACGCTCTGTGTTGGCTATC
AGTGGACGGAGGGAACACGCGTTTCTTTCCTTGAGTATCTTAGGCGTAGT
TCGTCACGCTTTGCCCTTGTCTGGGCTTCCTTTGGCGTCGTCTATGCTTC
AGGAGCGCGATGGTGATAGCCCTAGTTCCCCGCCCTCGCTTGCCGTTTCG
CTCTCCACGCTCTTCATCGCGACGAACAATCTAGTAACACGCTACTCTGT
GTAGGCCTCATTTGTGAACAGTTTAGTAAAGCTTGTACGTGTGCGTGCCG
CGTTATCTTGCACCGTTGCTGCAGGTGGACGAAGAACTGCGAGTCTTCAA
GTACAGTAACACGGAATGGGAGTTGGAAGGAGAGTTAGAGGAGTTCAGCT
CTTTCGACGACAGGAGATGACGGCTCCGTGCCGTCCGGTGTTGGCTTTGA
GTGTTGTTTTGCTGTCGAGTTGGGTGCATGGAGATGATACGGGTGCTACT
GTAGTTGCGCGCTTAGACCACCCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7416:779..3704+

>mRNA_M-pyrifera_M_contig7416.17561.1 ID=mRNA_M-pyrifera_M_contig7416.17561.1|Name=mRNA_M-pyrifera_M_contig7416.17561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig7416:779..3704+ (Macrocystis pyrifera P11B4 male)
ATGGGCGTCTTGGGCACGGTCAAAGAGATTGTGCAGATGGGCGTCTTGGG
CACGGTCAAAGAGATTGTGCAGATATGTTTAGCGGTGCTCGTGTTCAGCG
ACCGAATCACCCTCTGGAAGATGGTGGGGCTTCTCTTGGCAATGATTGGG
AGCCTGAGCTACAAGGTCGTCCGTGGAAAGCCGAGCGCCCGCGCTAGCAC
CGGGGACGGAACTAAGGGAGATAGATATGTTTAGCGGTGCTCGTGTTCAG
CGACCGAATCACCCTCTGGAAGATGGTGGGGCTTCTCTTGGCAATGATTG
GGAGCCTGAGCTACAAGGTCGTCCGTGGAAAGCCGAGCGCCCGCGCTAGC
ACCGGGGACGGAACTAAGGGAGATAGACAACAAGGGCAGAATACAGGCGG
GGCGCCGGGAGAAGGCAACCCAGGATCAAGGCTGTCTTACTCGGCGGTTT
CTCAGCAGGAGACAACAAGGGCAGAATACAGGCGGGGCGCCGGGAGAAGG
CAACCCAGGATCAAGGCTGTCTTACTCGGCGGTTTCTCAGCAGGAGGTGG
ACGAAGAACTGCGAGTCTTCAAGTACAGTAACACGGAATGGGAGTTGGAA
GGAGAGTTAGAGGAGTTCAGCTCTTTCGACGACAGGAGATGAGTGGACGA
AGAACTGCGAGTCTTCAAGTACAGTAACACGGAATGGGAGTTGGAAGGAG
AGTTAGAGGAGTTCAGCTCTTTCGACGACAGGAGATGA
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