mRNA_M-pyrifera_M_contig74130.17554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74130.17554.1
Unique NamemRNA_M-pyrifera_M_contig74130.17554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: F0Y411_AURAN (DUF2012 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y411_AURAN)

HSP 1 Score: 104 bits (260), Expect = 8.320e-26
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    1 ANAPRCELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVLMALGMGVLMLLSSWSMGNMSKEELAEMREQ 417
            A+ P  E+VL+GG Y T++R +G FVFH+V  GVY L+V     +FS+ ++ +P    E ++ +EYR+PGAAK  + YPL +    +  YF  R+      L RNP +LM L  G +++L    M NM  EE+ +M+EQ
Sbjct:    1 ASLPTTEVVLNGGEYRTYTRPDGGFVFHDVEPGVYLLDVLSVDYIFSQVKLNLPKAGGEAIRCLEYRYPGAAKQPMAYPLELAAHVKQQYFEVRETPGLHTLFRNPMMLMLLFTGAVVVLMPKMMDNMDPEEMKKMQEQ 139          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A7S2SSA1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSA1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.110e-21
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   22 LVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVLMAL-GMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNM 474
            + L+GG + T S  +G FVFH+V  G+Y L+V   + +FS+ ++ +P++ + K++ +EYRFPGA K  + YPL +   A+  YF  R+       LRNP   M L G+ V+++     +GNM  E+L EM+E Q  M      +PM ML+NM
Sbjct:   68 VTLNGGEFETLSLVDGSFVFHHVPPGIYLLDVLSGAALFSQVKINLPSDPDGKIKCLEYRFPGAQKQPMSYPLDLQAHAKLKYFEEREKIGIHTFLRNPMSYMVLFGLFVIVVFPKM-IGNMDPEQLKEMQEMQSQMA--GAQDPMEMLKNM 216          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A7S2CRA1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CRA1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.360e-21
Identity = 50/136 (36.76%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   10 PRCELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVLMALGMGVLMLLSSWSMGNMSKEELAEMREQ 417
            P  +L L+ G Y TFSR +G F FH+V  GVY L+V   +++FS+ ++ +P + E KV+ +EYR+PGA K  + YPL +    +  YF  R+ F    +L+NP   MA+     +++    M +M  E++ EM++Q
Sbjct:   46 PTTKLTLNAGEYETFSRFDGSFTFHDVKPGVYLLDVLSTTVMFSQVKLNLPNDPEGKVRCLEYRYPGAMKQPISYPLDLMAHVKIKYFEVRESFGIHTILKNPMSYMAIFSLFFIIVFPKMMNSMDPEQMKEMQDQ 181          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A6G0WP47_9STRA (DUF2012 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP47_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.260e-17
Identity = 53/159 (33.33%), Postives = 96/159 (60.38%), Query Frame = 1
Query:   10 PRCELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNMMSG 483
            P  ++VLDGG+ ST S R+G FVF++V +G Y++++   + +FS+++V + A  E  ++V+E+++PG  K  V +PL +   A+  YF PR+ FS   L+RNP+ L + + + ++ +L   S   +  EE  + +E+  A+G     +P  ML+ +  G
Sbjct:   43 PVHQVVLDGGVRSTLSTRDGRFVFYDVPAGRYTVDIYSTTHMFSQFKVDISATNE--IRVLEFKYPGTPKLAVSHPLVVDAHAKIEYFVPREKFSVLDLIRNPSFLALVVPLVMIWILPRLSENMLDPEEYKQAQEEMAAVG-----DPQAMLKGLFGG 194          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A2P4XRR2_9STRA (DUF2012 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRR2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.780e-14
Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   19 ELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNMMSG 483
            ++ L+GG  +TF R +G FVF ++ +G Y +++     +FS+Y+V V A+    ++ +EY++PGA K +  YPL + P  +  YF  R+ F+   L+ NP+ L + + +G+L LL   S G M  EE   M++ Q+ MG  D   P  +L  M+ G
Sbjct:   40 KVQLNGGEQTTFVRSDGTFVFRDLGTGRYVVDIPSTQFLFSQYKVDVAAD--GLIRALEYKYPGAPKMRADYPLNVEPVKQLDYFEQREKFNLLGLIMNPSFLTIVVPIGLLYLLPKLSEG-MDPEE---MKKAQEEMGSTD---PSSLLAGMLGG 186          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A8H3WWW5_GIGMA (Putative membrane protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3WWW5_GIGMA)

HSP 1 Score: 72.8 bits (177), Expect = 1.050e-12
Identity = 50/140 (35.71%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   10 PRCELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEK--VQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVLMALGMGVLMLL-SSWSMGNMSKEELAEMREQQ 420
            P  ++VLDGG YSTF R++G FV  NV  G Y  EV     ++ R RV V +  E +  V ++   +     + + YPL ++ +A   YF PR+ FS  +LL NP +++ +G GV++LL     M N+ +  L E+++ Q
Sbjct:   50 PTTKVVLDGGKYSTFVRKDGKFVIDNVPPGSYLFEVLSRKFIYPRLRVDVDSNGEIRPFVTIIGSEWSNQGPS-LPYPLELFARAPADYFIPREGFSITSLLFNPYIIL-MGFGVILLLVMPKMMANLDQAALQELQQNQ 187          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A5D6XZN5_9STRA (DUF2012 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZN5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.010e-12
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   19 ELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQ 417
            +++L+GG   T++R +G FVF NV+SG Y +++     +FS+Y++ V  +    ++ +EY++PGA K +  YPL         YF  R+ F+   L+ +P+ L + + +G+L +L   S G M  EE  + +E+
Sbjct:   39 KVLLNGGEQVTYARADGSFVFRNVASGRYVVDIPSELFLFSQYKLDVAPD--GVIRALEYKYPGAGKQRAEYPLVAEAVTELNYFEQREKFNLLGLIMSPSFLTIVVPIGLLYVLPKLSEGMMDPEEFKKAQEE 170          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A662YEC2_9STRA (DUF2012 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEC2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.070e-12
Identity = 50/156 (32.05%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   19 ELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNMMSG 483
            ++ L+GG  + F R +G F+F +V+ G Y +++     +FS+Y++ V   E+  V+ +EY++PGA KA+  YPL      +  YF  R+ F+   L+ +P+ L + + +G+L +L   S G M  EE  + +E+   MG  D   P  +L  M+ G
Sbjct:   45 KVQLNGGEQTAFVRSDGSFLFRDVAPGRYVVDIPSQEFLFSQYKLDVA--EDGAVRALEYKYPGAPKARADYPLAAEAVKQLNYFEQREKFNLLGLIMSPSFLTVVVPIGLLYVLPKLSEGMMDPEEFKKAQEE---MGSQD---PSSLLSGMLGG 192          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: A0A3R7KBI6_9STRA (DUF2012 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KBI6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.690e-12
Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   19 ELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNMMSG 483
            ++ L+GG  + F R +G F+F +V+ G Y +++     +FS+Y++ V A+    ++ +EY++PGA KA+  YPL +    +  YF  R+ F+   L+ NP+ L + + +G+L LL     G M  EE   M++ Q+ MG  D   P  +L  M+ G
Sbjct:   43 KVQLNGGEQTAFVRSDGSFLFRDVAPGRYVVDIPSQEFLFSQYKLDVGAD--GLIRALEYKYPGAPKARADYPLDVEAVKQLNYFEQREKFNLLGLIMNPSFLTIIVPIGLLYLLPKLQEG-MDPEE---MKKAQEEMGSAD---PSSLLAGMLGG 189          
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Match: G4ZUC4_PHYSP (DUF2012 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZUC4_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 7.950e-11
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   19 ELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYRVRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPWALLRNPTVL-MALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSNPMGMLQNMMSG 483
            ++ L+GG  + F R +G F+F +V  G Y +++     +FS+Y+V V A+    ++ +EY++PGA KA+  YPL         YF  R+ F+   ++ +P+ L + + +G+L LL   S G M  EE   M++ Q+ MG  D   P  +L  M+ G
Sbjct:   41 KVQLNGGEQTVFVRSDGSFLFRDVGPGRYVVDIPSTQFLFSQYKVDVGAD--GLIRALEYKYPGAPKARASYPLVAEAVKELDYFEQREKFNLLGMIMSPSFLTIIVPIGLLYLLPKLSEG-MDPEE---MKKAQEEMGSTD---PSSLLAGMLGG 187          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74130.17554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
F0Y411_AURAN8.320e-2640.29DUF2012 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2SSA1_9STRA2.110e-2138.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CRA1_9STRA2.360e-2136.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0WP47_9STRA1.260e-1733.33DUF2012 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A2P4XRR2_9STRA1.780e-1434.62DUF2012 domain-containing protein n=1 Tax=Phytopht... [more]
A0A8H3WWW5_GIGMA1.050e-1235.71Putative membrane protein n=1 Tax=Gigaspora margar... [more]
A0A5D6XZN5_9STRA2.010e-1232.09DUF2012 domain-containing protein n=1 Tax=Pythium ... [more]
A0A662YEC2_9STRA3.070e-1232.05DUF2012 domain-containing protein n=2 Tax=Nothophy... [more]
A0A3R7KBI6_9STRA5.690e-1232.69DUF2012 domain-containing protein n=4 Tax=Phytopht... [more]
G4ZUC4_PHYSP7.950e-1132.69DUF2012 domain-containing protein n=3 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74130contigM-pyrifera_M_contig74130:536..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog44056.XP_009034766.1
Preferred nameEMC7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008092,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0072546,GO:0098796,GO:0098827
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3306@1,KOG3306@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.2124045-CDS-M-pyrifera_M_contig74130:535..10181622816639.2124045-CDS-M-pyrifera_M_contig74130:535..1018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74130 536..1018 -
1692278092.5293522-CDS-M-pyrifera_M_contig74130:535..10181692278092.5293522-CDS-M-pyrifera_M_contig74130:535..1018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74130 536..1018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74130.17554.1prot_M-pyrifera_M_contig74130.17554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74130 536..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74130.17554.1

>prot_M-pyrifera_M_contig74130.17554.1 ID=prot_M-pyrifera_M_contig74130.17554.1|Name=mRNA_M-pyrifera_M_contig74130.17554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
ANAPRCELVLDGGLYSTFSRRNGDFVFHNVSSGVYSLEVRHPSLVFSRYR
VRVPAEEEEKVQVVEYRFPGAAKAKVGYPLRIYPQARPFYFPPRQVFSPW
ALLRNPTVLMALGMGVLMLLSSWSMGNMSKEELAEMREQQKAMGLGDMSN
PMGMLQNMMSG
back to top

mRNA from alignment at M-pyrifera_M_contig74130:536..1018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74130.17554.1 ID=mRNA_M-pyrifera_M_contig74130.17554.1|Name=mRNA_M-pyrifera_M_contig74130.17554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig74130:536..1018- (Macrocystis pyrifera P11B4 male)
GCGAATGCGCCACGTTGCGAGCTGGTGCTGGACGGAGGCCTCTACTCGAC GTTTTCTCGTCGCAACGGGGATTTCGTGTTCCACAACGTGTCTTCCGGGG TGTATTCTCTGGAGGTGCGGCATCCCAGCCTGGTGTTTTCCCGCTATCGG GTGCGCGTGCCTGCGGAGGAGGAGGAGAAGGTGCAGGTGGTGGAATACCG CTTCCCAGGGGCAGCCAAGGCCAAAGTGGGGTATCCGTTGCGCATCTACC CACAGGCAAGACCCTTCTACTTCCCTCCTCGGCAAGTCTTCTCCCCATGG GCGCTGCTACGGAACCCAACAGTCCTCATGGCACTCGGAATGGGGGTCCT CATGCTCCTCTCCTCCTGGAGCATGGGGAATATGAGCAAAGAAGAGCTCG CCGAAATGAGAGAACAGCAAAAAGCCATGGGACTCGGAGACATGAGCAAT CCAATGGGAATGCTCCAAAACATGATGAGTGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74130:536..1018-

>mRNA_M-pyrifera_M_contig74130.17554.1 ID=mRNA_M-pyrifera_M_contig74130.17554.1|Name=mRNA_M-pyrifera_M_contig74130.17554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig74130:536..1018- (Macrocystis pyrifera P11B4 male)
GCGAATGCGCCACGTTGCGAGCTGGTGCTGGACGGAGGCCTCTACTCGAC
GTTTTCTCGTCGCAACGGGGATTTCGTGTTCCACAACGTGTCTTCCGGGG
TGTATTCTCTGGAGGTGCGGCATCCCAGCCTGGTGTTTTCCCGCTATCGG
GTGCGCGTGCCTGCGGAGGAGGAGGAGAAGGTGCAGGTGGTGGAATACCG
CTTCCCAGGGGCAGCCAAGGCCAAAGTGGGGTATCCGTTGCGCATCTACC
CACAGGCAAGACCCTTCTACTTCCCTCCTCGGCAAGTCTTCTCCCCATGG
GCGCTGCTACGGAACCCAACAGTCCTCATGGCACTCGGAATGGGGGTCCT
CATGCTCCTCTCCTCCTGGAGCATGGGGAATATGAGCAAAGAAGAGCTCG
CCGAAATGAGAGAACAGCAAAAAGCCATGGGACTCGGAGACATGAGCAAT
CCAATGGGAATGCTCCAAAACATGATGAGTGGAGCGAATGCGCCACGTTG
CGAGCTGGTGCTGGACGGAGGCCTCTACTCGACGTTTTCTCGTCGCAACG
GGGATTTCGTGTTCCACAACGTGTCTTCCGGGGTGTATTCTCTGGAGGTG
CGGCATCCCAGCCTGGTGTTTTCCCGCTATCGGGTGCGCGTGCCTGCGGA
GGAGGAGGAGAAGGTGCAGGTGGTGGAATACCGCTTCCCAGGGGCAGCCA
AGGCCAAAGTGGGGTATCCGTTGCGCATCTACCCACAGGCAAGACCCTTC
TACTTCCCTCCTCGGCAAGTCTTCTCCCCATGGGCGCTGCTACGGAACCC
AACAGTCCTCATGGCACTCGGAATGGGGGTCCTCATGCTCCTCTCCTCCT
GGAGCATGGGGAATATGAGCAAAGAAGAGCTCGCCGAAATGAGAGAACAG
CAAAAAGCCATGGGACTCGGAGACATGAGCAATCCAATGGGAATGCTCCA
AAACATGATGAGTGGA
back to top