mRNA_M-pyrifera_M_contig74099.17547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74099.17547.1
Unique NamemRNA_M-pyrifera_M_contig74099.17547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74099.17547.1 vs. uniprot
Match: A0A517PWW1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWW1_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 3.590e-14
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    4 KTLPEVVSKVYALLEPLESENRQKVMGSVMTLLGEQSLPT-----SSAKTSSPNLGGDEDPTFGPKVMRWLKQFEVPMTAIEEVFHIDG 255
            KTLP++V  ++ LL+PLESE+RQKV+ SVM LLG+ ++P         K  S + G  +D T+G +  RW+ Q  +    I E+FHIDG
Sbjct:    4 KTLPQIVQDIFVLLDPLESEDRQKVVDSVMALLGD-AMPRPGRNDGEGKKDSGDAG--DDATYGQRAKRWMDQNNISAVMISEIFHIDG 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74099.17547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517PWW1_9PLAN3.590e-1443.82Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74099contigM-pyrifera_M_contig74099:827..1081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.9245284-CDS-M-pyrifera_M_contig74099:826..10811622816638.9245284-CDS-M-pyrifera_M_contig74099:826..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74099 827..1081 +
1692278092.3717804-CDS-M-pyrifera_M_contig74099:826..10811692278092.3717804-CDS-M-pyrifera_M_contig74099:826..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74099 827..1081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74099.17547.1prot_M-pyrifera_M_contig74099.17547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74099 827..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74099.17547.1

>prot_M-pyrifera_M_contig74099.17547.1 ID=prot_M-pyrifera_M_contig74099.17547.1|Name=mRNA_M-pyrifera_M_contig74099.17547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
TKTLPEVVSKVYALLEPLESENRQKVMGSVMTLLGEQSLPTSSAKTSSPN
LGGDEDPTFGPKVMRWLKQFEVPMTAIEEVFHIDG
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mRNA from alignment at M-pyrifera_M_contig74099:827..1081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74099.17547.1 ID=mRNA_M-pyrifera_M_contig74099.17547.1|Name=mRNA_M-pyrifera_M_contig74099.17547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig74099:827..1081+ (Macrocystis pyrifera P11B4 male)
ACAAAAACATTGCCGGAAGTTGTTAGCAAGGTATACGCCCTTTTGGAACC
GCTGGAATCCGAAAACCGACAGAAGGTCATGGGCTCAGTTATGACACTTC
TCGGCGAGCAGTCGCTGCCGACATCAAGTGCGAAGACGTCTTCCCCTAAC
CTAGGTGGGGACGAAGATCCAACATTTGGGCCAAAAGTAATGAGGTGGCT
GAAACAGTTCGAGGTCCCCATGACTGCAATTGAAGAAGTGTTTCACATTG
ACGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74099:827..1081+

>mRNA_M-pyrifera_M_contig74099.17547.1 ID=mRNA_M-pyrifera_M_contig74099.17547.1|Name=mRNA_M-pyrifera_M_contig74099.17547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig74099:827..1081+ (Macrocystis pyrifera P11B4 male)
ACAAAAACATTGCCGGAAGTTGTTAGCAAGGTATACGCCCTTTTGGAACC
GCTGGAATCCGAAAACCGACAGAAGGTCATGGGCTCAGTTATGACACTTC
TCGGCGAGCAGTCGCTGCCGACATCAAGTGCGAAGACGTCTTCCCCTAAC
CTAGGTGGGGACGAAGATCCAACATTTGGGCCAAAAGTAATGAGGTGGCT
GAAACAGTTCGAGGTCCCCATGACTGCAATTGAAGAAGTGTTTCACATTG
ACGGTACAAAAACATTGCCGGAAGTTGTTAGCAAGGTATACGCCCTTTTG
GAACCGCTGGAATCCGAAAACCGACAGAAGGTCATGGGCTCAGTTATGAC
ACTTCTCGGCGAGCAGTCGCTGCCGACATCAAGTGCGAAGACGTCTTCCC
CTAACCTAGGTGGGGACGAAGATCCAACATTTGGGCCAAAAGTAATGAGG
TGGCTGAAACAGTTCGAGGTCCCCATGACTGCAATTGAAGAAGTGTTTCA
CATTGACGGT
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