mRNA_M-pyrifera_M_contig73940.17518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73940.17518.1
Unique NamemRNA_M-pyrifera_M_contig73940.17518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A7S0FP58_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP58_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.530e-28
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G++LA+PI+R +++E L EGEARA+LEDC RVL YRDCR LNR+Q+A+VT        KADG  LISEP+E+ T WD   FVEP    +  G W
Sbjct:   75 GFGSYLAIPILREKHREDLEEGEARALLEDCMRVLFYRDCRALNRIQIAKVT--------KADG-VLISEPYEIETSWDSASFVEPKGQLEGDGGW 161
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A482RGX8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGX8_9ARCH)

HSP 1 Score: 107 bits (266), Expect = 1.350e-27
Identity = 52/96 (54.17%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G+G HLA+P++R R+   +SEGEARA+LEDC RV  YRD R LN++ LA+VT   S          LISEP+ L TKWDFK FV P    D GGSW
Sbjct:   65 GMGTHLALPLIRERWSADMSEGEARALLEDCMRVCWYRDTRALNKITLAKVTSEGS----------LISEPYTLDTKWDFKSFVAPKAATDTGGSW 150
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A835Z5Q8_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.390e-25
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G GAHLA+PI+RRR++  + EGEARA+LEDC RVL YRDCR LNR+Q+A+ T              L+S+P+ + T W    F +P  G D  GSW
Sbjct:  186 GFGAHLALPILRRRWRADMEEGEARALLEDCMRVLFYRDCRALNRIQIAKATREG----------VLVSDPYTIETSWSLAAFAQPKAGADTDGSW 271
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A7S2S9Q9_9STRA (Proteasome subunit beta n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9Q9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.120e-24
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G++LA+P+MR +Y+  + EGEARA+LEDC RVL YRDCR LNR+Q+A+ TP           + LIS+P+EL T WD  ++++P    D  G W
Sbjct:  171 GFGSYLAMPLMREKYRPDMEEGEARALLEDCMRVLFYRDCRALNRIQIAKATPD----------EVLISDPYELETNWDSAEYMKPKGQLDGDGGW 256
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A812X8W8_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X8W8_9DINO)

HSP 1 Score: 102 bits (253), Expect = 1.330e-24
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G H+A+P++R  +K  +SE +ARA++E+C ++L YRDCRT+N++ LA++T         A+G  ++SEPF L TKWDF+ F++   G D GGSW
Sbjct:  163 GFGGHMAIPLIRESWKPDMSESDARALVEECMKILYYRDCRTINKITLAKIT---------AEGG-MVSEPFTLATKWDFQSFIKAKAGADTGGSW 248
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A7S2XLY0_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLY0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.940e-24
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMG-GSW 288
            G G++LA+PI+R +Y+  L EGEARA+LEDC RVL YRDCR LNR+Q+A+VT         A+   +I EP+E+ T WD + FV+   G D G G W
Sbjct:  181 GFGSYLALPILREKYRPDLEEGEARALLEDCMRVLFYRDCRALNRIQIAKVT---------AESGVIIHEPYEIDTSWDSEAFVQSKGGLDEGDGGW 268
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A7S4T5H5_9STRA (Proteasome subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T5H5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.010e-24
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G++LA+PI+R +Y+  L EGEARA+LEDC RVL YRDCR  NR+Q+A+VT        K DG  LISEP+EL T WD   FV P    +  G W
Sbjct:  183 GFGSYLALPILREKYRADLEEGEARALLEDCMRVLFYRDCRASNRIQIAKVT--------KEDG-VLISEPYELDTSWDSASFVVPKGELEGDGGW 269
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: D8LRR1_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.040e-24
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G HLA+PI+R++++  L EGEARA+LEDC RVL YRDCR LNR+Q+A+ T         A+G T++S+ +++ T+W    F +P  G+D  GSW
Sbjct:  167 GFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYRDCRALNRIQIAKAT---------AEG-TVVSDAYKVDTEWSLASFSQPKAGQDTDGSW 252
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: B8LBU0_THAPS (Proteasome subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBU0_THAPS)

HSP 1 Score: 99.4 bits (246), Expect = 2.080e-23
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMG--GSW 288
            G G ++A+P+MR +Y   + EGEARA+LEDC R+L YRDCR LNRVQ+A+V         +  G  L+SEP+EL T WDF+ FV  NKG +MG  G W
Sbjct:  180 GFGGYIALPLMREKYHPDMEEGEARALLEDCLRILFYRDCRALNRVQIAKV---------ERGGQVLVSEPYELDTHWDFEGFVT-NKG-EMGTDGGW 266
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BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Match: A0A7S3QBC8_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBC8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.060e-23
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 GLGAHLAVPIMRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDPKADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW 288
            G G++LA+PI+R +Y+  L EGEARA+LEDC RVL YRDCR LN++Q+A+VT        K DG  LIS+P+E+ T W    F+EP    D  G W
Sbjct:  924 GFGSYLAIPILREKYRADLEEGEARALLEDCMRVLFYRDCRALNKIQIAKVT--------KDDG-VLISDPYEIETDWKSASFIEPKGQLDGDGGW 1010
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73940.17518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0FP58_9STRA4.530e-2855.21Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A482RGX8_9ARCH1.350e-2754.17Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835Z5Q8_9STRA5.390e-2548.96Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S9Q9_9STRA1.120e-2447.92Proteasome subunit beta n=1 Tax=Eucampia antarctic... [more]
A0A812X8W8_9DINO1.330e-2445.83Proteasome subunit beta n=1 Tax=Symbiodinium sp. K... [more]
A0A7S2XLY0_9STRA3.940e-2450.52Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
A0A7S4T5H5_9STRA4.010e-2453.13Proteasome subunit beta n=1 Tax=Ditylum brightwell... [more]
D8LRR1_ECTSI4.040e-2447.92Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
B8LBU0_THAPS2.080e-2352.04Proteasome subunit beta n=1 Tax=Thalassiosira pseu... [more]
A0A7S3QBC8_9STRA5.060e-2351.04Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73940contigM-pyrifera_M_contig73940:3..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog35128.Thaps24318
Preferred namePSMB4
KEGG koko:K02736,ko:K05542,ko:K18740
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000502,GO:0001530,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007098,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022402,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031023,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0036211,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080134,GO:0090068,GO:0097367,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
EggNOG OGs2XC31@2836,KOG0185@1,KOG0185@2759
EC1.3.1.88,3.4.25.1
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016,ko03019,ko03051
Exons1
Model size291
Cds size261
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.3567061-UTR-M-pyrifera_M_contig73940:2..321622816637.3567061-UTR-M-pyrifera_M_contig73940:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73940 3..32 +
1692278091.412483-UTR-M-pyrifera_M_contig73940:2..321692278091.412483-UTR-M-pyrifera_M_contig73940:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73940 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.3674216-CDS-M-pyrifera_M_contig73940:32..2931622816637.3674216-CDS-M-pyrifera_M_contig73940:32..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73940 33..293 +
1692278091.4273775-CDS-M-pyrifera_M_contig73940:32..2931692278091.4273775-CDS-M-pyrifera_M_contig73940:32..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73940 33..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73940.17518.1prot_M-pyrifera_M_contig73940.17518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73940 33..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73940.17518.1

>prot_M-pyrifera_M_contig73940.17518.1 ID=prot_M-pyrifera_M_contig73940.17518.1|Name=mRNA_M-pyrifera_M_contig73940.17518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MRRRYKEGLSEGEARAILEDCARVLIYRDCRTLNRVQLARVTPPASTEDP
KADGDTLISEPFELPTKWDFKDFVEPNKGRDMGGSW*
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mRNA from alignment at M-pyrifera_M_contig73940:3..293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73940.17518.1 ID=mRNA_M-pyrifera_M_contig73940.17518.1|Name=mRNA_M-pyrifera_M_contig73940.17518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig73940:3..293+ (Macrocystis pyrifera P11B4 male)
GGCCTTGGTGCCCACTTGGCAGTCCCCATCATGCGTCGTCGCTACAAAGA
AGGCCTCAGTGAAGGCGAAGCACGTGCCATCCTTGAAGATTGCGCCAGAG
TTCTCATCTACCGTGATTGCAGAACACTCAACAGAGTACAACTTGCCCGA
GTCACGCCACCAGCATCCACAGAAGATCCCAAAGCTGACGGCGACACCCT
CATTAGTGAACCCTTTGAGCTCCCCACCAAATGGGACTTCAAAGACTTTG
TCGAGCCAAACAAGGGCAGAGACATGGGTGGGAGTTGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73940:3..293+

>mRNA_M-pyrifera_M_contig73940.17518.1 ID=mRNA_M-pyrifera_M_contig73940.17518.1|Name=mRNA_M-pyrifera_M_contig73940.17518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig73940:3..293+ (Macrocystis pyrifera P11B4 male)
ATGCGTCGTCGCTACAAAGAAGGCCTCAGTGAAGGCGAAGCACGTGCCAT
CCTTGAAGATTGCGCCAGAGTTCTCATCTACCGTGATTGCAGAACACTCA
ACAGAGTACAACTTGCCCGAGTCACGCCACCAGCATCCACAGAAGATCCC
AAAGCTGACGGCGACACCCTCATTAGTGAACCCTTTGAGCTCCCCACCAA
ATGGGACTTCAAAGACTTTGTCGAGCCAAACAAGGGCAGAGACATGGGTG
GGAGTTGGTAAATGCGTCGTCGCTACAAAGAAGGCCTCAGTGAAGGCGAA
GCACGTGCCATCCTTGAAGATTGCGCCAGAGTTCTCATCTACCGTGATTG
CAGAACACTCAACAGAGTACAACTTGCCCGAGTCACGCCACCAGCATCCA
CAGAAGATCCCAAAGCTGACGGCGACACCCTCATTAGTGAACCCTTTGAG
CTCCCCACCAAATGGGACTTCAAAGACTTTGTCGAGCCAAACAAGGGCAG
AGACATGGGTGGGAGTTGGTAA
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