mRNA_M-pyrifera_M_contig73937.17517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73937.17517.1
Unique NamemRNA_M-pyrifera_M_contig73937.17517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73937.17517.1 vs. uniprot
Match: A0A2K3DK03_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DK03_CHLRE)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-5
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:    1 MNKLCAENLHLGGAVCVAQAWLEG-VCGLRMATEAVELMVSQCL------LDPRPLSLPGTVSSLFLRFLTLVATFPWASKVLFVDPAASARATDREEAQAAFDRMRERAREGEAAPPPPIFLVTPSQRND--WVPPFTSTTPSAPSWRRVVSLA 438
            ++++   N     A  +A  W+   +    ++ +AVEL+V+         + P P    G+  + FLRFL L+A +PW+ K L VDPA   +  DR   +A   R  ER   GEA   P +++ TP  R+   W    TS  PSAP  +R+  LA
Sbjct: 1018 ISQVAGANASYAPAARLAGRWVAAHMMSNHVSPQAVELLVAAAFGGAGVPVGPPP----GSRITGFLRFLQLLARWPWSLKPLVVDPARELKEPDR---RALAHRFEERRAAGEA---PALYICTPRDRDSRHW----TSRGPSAPVLQRLSVLA 1158
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BLAST of mRNA_M-pyrifera_M_contig73937.17517.1 vs. uniprot
Match: A0A835Y8P3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y8P3_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 8.010e-5
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 1 
Query:    1 MNKLCAENLHLGGAVCVAQAWLEG-VCGLRMATEAVELMVSQCLLDPRPLSLPGTVSSL--FLRFLTLVATFPWASKVLFVDPAASARATDREEAQAAFDRMRERAREGEAAPPPPIFLVTPSQRND--WVPPFTSTTPSAPSWRRVVSLA 438
            ++ +   N   G A  +A  WL   +    +  + VEL+++         + P   S L  FLRFL L+AT+PW  + L VDPA   +  DR   +A   R  ER   GEA   PP+++ TP  R    W    TS  PS  + +R+  LA
Sbjct:  967 VSYVAGANASYGPAARLAGRWLAAHMMSYHVGPQTVELLMAAAYGGAGGPASPPPGSRLTGFLRFLQLLATWPWHLRPLVVDPARELKEPDR---RALRKRFEERRAAGEA---PPMYICTPRDRESRHW----TSKGPSTAALQRLTLLA 1107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73937.17517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2K3DK03_CHLRE3.200e-532.26Uncharacterized protein n=3 Tax=Chlamydomonas TaxI... [more]
A0A835Y8P3_9CHLO8.010e-532.45Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73937contigM-pyrifera_M_contig73937:632..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.325375-CDS-M-pyrifera_M_contig73937:631..10871622816637.325375-CDS-M-pyrifera_M_contig73937:631..1087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73937 632..1087 -
1692278091.3942695-CDS-M-pyrifera_M_contig73937:631..10871692278091.3942695-CDS-M-pyrifera_M_contig73937:631..1087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73937 632..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73937.17517.1prot_M-pyrifera_M_contig73937.17517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73937 632..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73937.17517.1

>prot_M-pyrifera_M_contig73937.17517.1 ID=prot_M-pyrifera_M_contig73937.17517.1|Name=mRNA_M-pyrifera_M_contig73937.17517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MNKLCAENLHLGGAVCVAQAWLEGVCGLRMATEAVELMVSQCLLDPRPLS
LPGTVSSLFLRFLTLVATFPWASKVLFVDPAASARATDREEAQAAFDRMR
ERAREGEAAPPPPIFLVTPSQRNDWVPPFTSTTPSAPSWRRVVSLAQAAL
HT
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mRNA from alignment at M-pyrifera_M_contig73937:632..1087-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73937.17517.1 ID=mRNA_M-pyrifera_M_contig73937.17517.1|Name=mRNA_M-pyrifera_M_contig73937.17517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig73937:632..1087- (Macrocystis pyrifera P11B4 male)
ATGAACAAGTTGTGTGCTGAGAATCTGCATCTTGGTGGTGCAGTTTGTGT
TGCTCAAGCATGGTTGGAAGGAGTGTGTGGGTTGCGGATGGCAACCGAGG
CTGTGGAACTGATGGTGAGCCAATGTTTGCTTGATCCACGCCCATTGTCT
TTGCCTGGAACTGTGTCAAGTCTCTTTCTCAGATTTCTAACACTTGTTGC
AACATTTCCATGGGCATCAAAAGTGCTGTTTGTAGATCCTGCTGCTTCTG
CACGTGCAACAGACCGTGAAGAGGCACAGGCAGCATTTGATCGAATGAGA
GAACGCGCGAGAGAAGGGGAGGCAGCACCACCACCTCCAATTTTCTTGGT
TACTCCATCACAACGAAATGATTGGGTTCCACCATTCACTTCCACGACAC
CATCAGCTCCAAGCTGGAGAAGAGTTGTCTCCTTAGCTCAAGCTGCACTT
CATACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73937:632..1087-

>mRNA_M-pyrifera_M_contig73937.17517.1 ID=mRNA_M-pyrifera_M_contig73937.17517.1|Name=mRNA_M-pyrifera_M_contig73937.17517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig73937:632..1087- (Macrocystis pyrifera P11B4 male)
ATGAACAAGTTGTGTGCTGAGAATCTGCATCTTGGTGGTGCAGTTTGTGT
TGCTCAAGCATGGTTGGAAGGAGTGTGTGGGTTGCGGATGGCAACCGAGG
CTGTGGAACTGATGGTGAGCCAATGTTTGCTTGATCCACGCCCATTGTCT
TTGCCTGGAACTGTGTCAAGTCTCTTTCTCAGATTTCTAACACTTGTTGC
AACATTTCCATGGGCATCAAAAGTGCTGTTTGTAGATCCTGCTGCTTCTG
CACGTGCAACAGACCGTGAAGAGGCACAGGCAGCATTTGATCGAATGAGA
GAACGCGCGAGAGAAGGGGAGGCAGCACCACCACCTCCAATTTTCTTGGT
TACTCCATCACAACGAAATGATTGGGTTCCACCATTCACTTCCACGACAC
CATCAGCTCCAAGCTGGAGAAGAGTTGTCTCCTTAGCTCAAGCTGCACTT
CATACTATGAACAAGTTGTGTGCTGAGAATCTGCATCTTGGTGGTGCAGT
TTGTGTTGCTCAAGCATGGTTGGAAGGAGTGTGTGGGTTGCGGATGGCAA
CCGAGGCTGTGGAACTGATGGTGAGCCAATGTTTGCTTGATCCACGCCCA
TTGTCTTTGCCTGGAACTGTGTCAAGTCTCTTTCTCAGATTTCTAACACT
TGTTGCAACATTTCCATGGGCATCAAAAGTGCTGTTTGTAGATCCTGCTG
CTTCTGCACGTGCAACAGACCGTGAAGAGGCACAGGCAGCATTTGATCGA
ATGAGAGAACGCGCGAGAGAAGGGGAGGCAGCACCACCACCTCCAATTTT
CTTGGTTACTCCATCACAACGAAATGATTGGGTTCCACCATTCACTTCCA
CGACACCATCAGCTCCAAGCTGGAGAAGAGTTGTCTCCTTAGCTCAAGCT
GCACTTCATACT
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