mRNA_M-pyrifera_M_contig73935.17516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73935.17516.1
Unique NamemRNA_M-pyrifera_M_contig73935.17516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73935.17516.1 vs. uniprot
Match: D5G988_TUBMM (PfkB domain-containing protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5G988_TUBMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:    1 GGRVVMCTALGKDESGVALRNSLEKDGVEVCGQER-EGDRTPQYVAMMHDDGNLVAAIADTEALDSATFSTLFPSSHPSLASP-SVVVAEANLSESILTDLCSHLLSQPTPTPLFLDPVGPSKSARIMSPSI-----LGVTALLAPDSYELHAM 441
            G    + +A+GKD +G      L+  G+++ G ++ +G  T +YVA+ +  G L  A AD    +SA   TL   +  ++A    VV  + NLS   L  +           PL  +P  PSKS RI+SP++         +L  P+++EL AM
Sbjct:  441 GANARLVSAVGKDLAGTWALERLQALGMDISGVKKIDGGVTARYVAINNSSGELFVAGADMRVFESAEMGTL---ARGAIAKGVKVVCVDGNLSVEGLAGVVRAAAG--LDIPLAFEPTSPSKSTRILSPTLPIYPSTSTVSLTTPNTHELTAM 589
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73935.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D5G988_TUBMM1.140e-530.52PfkB domain-containing protein n=1 Tax=Tuber melan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73935contigM-pyrifera_M_contig73935:617..1066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.2817612-CDS-M-pyrifera_M_contig73935:616..10511622816637.2817612-CDS-M-pyrifera_M_contig73935:616..1051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73935 617..1051 -
1692278091.3579457-CDS-M-pyrifera_M_contig73935:616..10511692278091.3579457-CDS-M-pyrifera_M_contig73935:616..1051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73935 617..1051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.2921894-UTR-M-pyrifera_M_contig73935:1051..10661622816637.2921894-UTR-M-pyrifera_M_contig73935:1051..1066Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73935 1052..1066 -
1692278091.3775342-UTR-M-pyrifera_M_contig73935:1051..10661692278091.3775342-UTR-M-pyrifera_M_contig73935:1051..1066Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73935 1052..1066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73935.17516.1prot_M-pyrifera_M_contig73935.17516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73935 617..1051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73935.17516.1

>prot_M-pyrifera_M_contig73935.17516.1 ID=prot_M-pyrifera_M_contig73935.17516.1|Name=mRNA_M-pyrifera_M_contig73935.17516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MCTALGKDESGVALRNSLEKDGVEVCGQEREGDRTPQYVAMMHDDGNLVA
AIADTEALDSATFSTLFPSSHPSLASPSVVVAEANLSESILTDLCSHLLS
QPTPTPLFLDPVGPSKSARIMSPSILGVTALLAPDSYELHAMAST
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mRNA from alignment at M-pyrifera_M_contig73935:617..1066-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73935.17516.1 ID=mRNA_M-pyrifera_M_contig73935.17516.1|Name=mRNA_M-pyrifera_M_contig73935.17516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig73935:617..1066- (Macrocystis pyrifera P11B4 male)
GGAGGTAGAGTGGTGATGTGTACTGCATTGGGCAAGGATGAGAGTGGTGT
GGCATTGAGGAATAGCTTGGAAAAGGATGGTGTAGAGGTTTGTGGACAAG
AACGAGAAGGGGATCGTACACCTCAGTATGTTGCAATGATGCACGATGAT
GGCAATTTAGTTGCTGCAATTGCAGACACAGAAGCGCTGGATTCTGCCAC
CTTCTCAACCCTCTTTCCATCCTCACATCCTTCCCTTGCTTCTCCTTCAG
TAGTTGTTGCTGAAGCAAACTTGTCAGAATCCATCCTCACAGATCTATGC
TCCCATCTCCTCTCTCAACCCACTCCAACTCCACTCTTCCTTGATCCAGT
TGGCCCATCAAAGTCGGCCCGAATTATGAGTCCATCCATCTTAGGAGTCA
CTGCACTCCTCGCTCCAGATTCTTATGAACTCCATGCAATGGCATCAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73935:617..1066-

>mRNA_M-pyrifera_M_contig73935.17516.1 ID=mRNA_M-pyrifera_M_contig73935.17516.1|Name=mRNA_M-pyrifera_M_contig73935.17516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig73935:617..1066- (Macrocystis pyrifera P11B4 male)
ATGTGTACTGCATTGGGCAAGGATGAGAGTGGTGTGGCATTGAGGAATAG
CTTGGAAAAGGATGGTGTAGAGGTTTGTGGACAAGAACGAGAAGGGGATC
GTACACCTCAGTATGTTGCAATGATGCACGATGATGGCAATTTAGTTGCT
GCAATTGCAGACACAGAAGCGCTGGATTCTGCCACCTTCTCAACCCTCTT
TCCATCCTCACATCCTTCCCTTGCTTCTCCTTCAGTAGTTGTTGCTGAAG
CAAACTTGTCAGAATCCATCCTCACAGATCTATGCTCCCATCTCCTCTCT
CAACCCACTCCAACTCCACTCTTCCTTGATCCAGTTGGCCCATCAAAGTC
GGCCCGAATTATGAGTCCATCCATCTTAGGAGTCACTGCACTCCTCGCTC
CAGATTCTTATGAACTCCATGCAATGGCATCAACAATGTGTACTGCATTG
GGCAAGGATGAGAGTGGTGTGGCATTGAGGAATAGCTTGGAAAAGGATGG
TGTAGAGGTTTGTGGACAAGAACGAGAAGGGGATCGTACACCTCAGTATG
TTGCAATGATGCACGATGATGGCAATTTAGTTGCTGCAATTGCAGACACA
GAAGCGCTGGATTCTGCCACCTTCTCAACCCTCTTTCCATCCTCACATCC
TTCCCTTGCTTCTCCTTCAGTAGTTGTTGCTGAAGCAAACTTGTCAGAAT
CCATCCTCACAGATCTATGCTCCCATCTCCTCTCTCAACCCACTCCAACT
CCACTCTTCCTTGATCCAGTTGGCCCATCAAAGTCGGCCCGAATTATGAG
TCCATCCATCTTAGGAGTCACTGCACTCCTCGCTCCAGATTCTTATGAAC
TCCATGCAATGGCATCAACA
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