mRNA_M-pyrifera_M_contig73928.17512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73928.17512.1
Unique NamemRNA_M-pyrifera_M_contig73928.17512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73928.17512.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.520e-36
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 LLWTRCIRLAHHQRLQARTGVARYDQEADGAMRWVTAAWATGALGAALLFVGASVPGDDRASFSAQGVVHLTLFVSAAAGFVGQATCTAWALRKAR 288
            L W  C++LAHHQRLQARTGVARYD EA+GA+RWV+ AW TGALGA L++  ASVPG++ ASFS QGV HL L  SAA G +GQA CTAWALRKAR
Sbjct:   98 LFW--CVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKAR 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73928.17512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE4_ECTSI2.520e-3670.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73928contigM-pyrifera_M_contig73928:153..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.1161358-CDS-M-pyrifera_M_contig73928:152..4701622816637.1161358-CDS-M-pyrifera_M_contig73928:152..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73928 153..470 +
1692278091.2821584-CDS-M-pyrifera_M_contig73928:152..4701692278091.2821584-CDS-M-pyrifera_M_contig73928:152..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73928 153..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73928.17512.1prot_M-pyrifera_M_contig73928.17512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73928 153..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73928.17512.1

>prot_M-pyrifera_M_contig73928.17512.1 ID=prot_M-pyrifera_M_contig73928.17512.1|Name=mRNA_M-pyrifera_M_contig73928.17512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
LLWTRCIRLAHHQRLQARTGVARYDQEADGAMRWVTAAWATGALGAALLF
VGASVPGDDRASFSAQGVVHLTLFVSAAAGFVGQATCTAWALRKARCGDA
SVLMD*
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mRNA from alignment at M-pyrifera_M_contig73928:153..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73928.17512.1 ID=mRNA_M-pyrifera_M_contig73928.17512.1|Name=mRNA_M-pyrifera_M_contig73928.17512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig73928:153..470+ (Macrocystis pyrifera P11B4 male)
TTGCTTTGGACAAGGTGCATTCGGTTGGCCCACCACCAGCGTCTGCAGGC TCGCACCGGGGTGGCAAGGTACGACCAGGAGGCCGACGGCGCGATGCGGT GGGTCACGGCCGCCTGGGCCACGGGCGCGCTCGGCGCCGCGCTCCTCTTC GTCGGGGCCAGCGTGCCCGGAGACGACAGAGCGTCTTTCTCCGCTCAGGG CGTCGTCCACCTGACGCTGTTCGTTTCGGCGGCGGCGGGCTTCGTCGGGC AGGCGACTTGCACCGCGTGGGCGCTTCGGAAGGCTAGGTGCGGAGATGCC AGTGTGTTGATGGATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73928:153..470+

>mRNA_M-pyrifera_M_contig73928.17512.1 ID=mRNA_M-pyrifera_M_contig73928.17512.1|Name=mRNA_M-pyrifera_M_contig73928.17512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig73928:153..470+ (Macrocystis pyrifera P11B4 male)
TTGCTTTGGACAAGGTGCATTCGGTTGGCCCACCACCAGCGTCTGCAGGC
TCGCACCGGGGTGGCAAGGTACGACCAGGAGGCCGACGGCGCGATGCGGT
GGGTCACGGCCGCCTGGGCCACGGGCGCGCTCGGCGCCGCGCTCCTCTTC
GTCGGGGCCAGCGTGCCCGGAGACGACAGAGCGTCTTTCTCCGCTCAGGG
CGTCGTCCACCTGACGCTGTTCGTTTCGGCGGCGGCGGGCTTCGTCGGGC
AGGCGACTTGCACCGCGTGGGCGCTTCGGAAGGCTAGGTGCGGAGATGCC
AGTGTGTTGATGGATTGATTGCTTTGGACAAGGTGCATTCGGTTGGCCCA
CCACCAGCGTCTGCAGGCTCGCACCGGGGTGGCAAGGTACGACCAGGAGG
CCGACGGCGCGATGCGGTGGGTCACGGCCGCCTGGGCCACGGGCGCGCTC
GGCGCCGCGCTCCTCTTCGTCGGGGCCAGCGTGCCCGGAGACGACAGAGC
GTCTTTCTCCGCTCAGGGCGTCGTCCACCTGACGCTGTTCGTTTCGGCGG
CGGCGGGCTTCGTCGGGCAGGCGACTTGCACCGCGTGGGCGCTTCGGAAG
GCTAGGTGCGGAGATGCCAGTGTGTTGATGGATTGA
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