mRNA_M-pyrifera_M_contig73925.17511.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73925.17511.1
Unique NamemRNA_M-pyrifera_M_contig73925.17511.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig73925.17511.1 vs. uniprot
Match: A0A1V9Y4P0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4P0_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.560e-6
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 TGNPANRQNGAFGYLGLLAMLGMSVELAVSLIRSS 105
            +GNPA R NG FGYLGL A +G+S+E A++LI S+
Sbjct:  110 SGNPAKRMNGGFGYLGLFASIGLSIEAAITLINSA 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig73925.17511.1 vs. uniprot
Match: A0A1V9Y7C0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7C0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.900e-6
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 TGNPANRQNGAFGYLGLLAMLGMSVELAVSLIRSS 105
            TG+P  R NGAFGYLGL A +G+S+E AV LI S+
Sbjct:  110 TGDPTKRMNGAFGYLGLFAAIGLSIEAAVRLITSA 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig73925.17511.1 vs. uniprot
Match: A0A067CU62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CU62_SAPPC)

HSP 1 Score: 46.2 bits (108), Expect = 5.410e-5
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 TGNPANRQNGAFGYLGLLAMLGMSVELAVSLIRSS 105
            TG+PA R +G FGYLGL A LG+S+E A++L+ S+
Sbjct:  110 TGDPAKRMHGGFGYLGLFASLGLSIEAAITLLYSA 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73925.17511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1V9Y4P0_9STRA3.560e-660.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9Y7C0_9STRA9.900e-662.86Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CU62_SAPPC5.410e-557.14Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73925contigM-pyrifera_M_contig73925:915..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.082383-CDS-M-pyrifera_M_contig73925:914..10221622816637.082383-CDS-M-pyrifera_M_contig73925:914..1022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73925 915..1022 +
1692278091.2720466-CDS-M-pyrifera_M_contig73925:914..10221692278091.2720466-CDS-M-pyrifera_M_contig73925:914..1022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73925 915..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73925.17511.1prot_M-pyrifera_M_contig73925.17511.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73925 915..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73925.17511.1

>prot_M-pyrifera_M_contig73925.17511.1 ID=prot_M-pyrifera_M_contig73925.17511.1|Name=mRNA_M-pyrifera_M_contig73925.17511.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
TGNPANRQNGAFGYLGLLAMLGMSVELAVSLIRSS*
back to top

mRNA from alignment at M-pyrifera_M_contig73925:915..1022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73925.17511.1 ID=mRNA_M-pyrifera_M_contig73925.17511.1|Name=mRNA_M-pyrifera_M_contig73925.17511.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig73925:915..1022+ (Macrocystis pyrifera P11B4 male)
ACCGGAAATCCCGCAAACCGTCAAAATGGAGCGTTCGGCTACCTCGGCCT
GCTGGCCATGCTCGGCATGTCGGTGGAGCTGGCGGTGTCCCTTATCCGGT
CCTCCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig73925:915..1022+

>mRNA_M-pyrifera_M_contig73925.17511.1 ID=mRNA_M-pyrifera_M_contig73925.17511.1|Name=mRNA_M-pyrifera_M_contig73925.17511.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig73925:915..1022+ (Macrocystis pyrifera P11B4 male)
ACCGGAAATCCCGCAAACCGTCAAAATGGAGCGTTCGGCTACCTCGGCCT
GCTGGCCATGCTCGGCATGTCGGTGGAGCTGGCGGTGTCCCTTATCCGGT
CCTCCTAAACCGGAAATCCCGCAAACCGTCAAAATGGAGCGTTCGGCTAC
CTCGGCCTGCTGGCCATGCTCGGCATGTCGGTGGAGCTGGCGGTGTCCCT
TATCCGGTCCTCCTAA
back to top