mRNA_M-pyrifera_M_contig73894.17505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73894.17505.1
Unique NamemRNA_M-pyrifera_M_contig73894.17505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A6I6AGJ3_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AGJ3_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 1.630e-29
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPG+AHQYEVISVNTAGLKSR
Sbjct:  397 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGQAHQYEVISVNTAGLKSR 452          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A350KJ08_9PLAN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KJ08_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 1.160e-25
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKS 165
            EKPTNRFGRPLFQNMSYGDTPVLPL KF++VDK A+PGK +QY+VI+VNTAG+KS
Sbjct:  114 EKPTNRFGRPLFQNMSYGDTPVLPLQKFEYVDKTAKPGKTYQYKVIAVNTAGVKS 168          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A2D5GZ61_9PLAN (Fibronectin type-III domain-containing protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ61_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 2.130e-24
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            EKPTNRFGRPLFQNMSYGDTPVLPL KF+FVDK A+PGK +QY+VI+VNTAG+KS+
Sbjct:  399 EKPTNRFGRPLFQNMSYGDTPVLPLQKFEFVDKTAKPGKTYQYKVIAVNTAGVKSK 454          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A518FTV9_9PLAN (Esterase PHB depolymerase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FTV9_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-22
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            EKPTNRFGRPL Q MSYGDTPVLPLLKFQFVDK A+ GK++QY+V SVNT GL+SR
Sbjct:  397 EKPTNRFGRPLLQGMSYGDTPVLPLLKFQFVDKTAQKGKSYQYDVTSVNTTGLESR 452          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A517RK22_9PLAN (Fibronectin type-III domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RK22_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-22
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            EKPTNRFGRPLFQ MSYGDTPVLPLLKFQFVDK AE GK +QY V +VNTAGL+S+
Sbjct:  399 EKPTNRFGRPLFQGMSYGDTPVLPLLKFQFVDKTAENGKQYQYRVKAVNTAGLQSK 454          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A353DE01_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A353DE01_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 2.130e-17
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            EKPT +FGRPLFQ M Y DTP  PL++ +F D   E G+ HQY VI+VNT GLKSR
Sbjct:   96 EKPTKKFGRPLFQGMLYSDTPAQPLVQMRFTDPKPEAGRTHQYRVIAVNTVGLKSR 151          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A2V8KV86_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8KV86_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 1.080e-16
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKS 165
            EKP  +FGRPLFQ+M+Y DTP  PLL+ +++D +A+PG+ H Y +I+VN+ GLKS
Sbjct:    3 EKPIGKFGRPLFQSMTYHDTPSQPLLEMRYLDASAKPGETHTYSIITVNSVGLKS 57          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A354TKG2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A354TKG2_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 4.430e-16
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            E+P N FGRP+FQ + Y DTP +PL+K  F D  AE GK H Y VISVNTAGLKS+
Sbjct:  384 EQPKNPFGRPIFQGLQYSDTPAMPLVKMTFTDSQAEAGKKHAYRVISVNTAGLKSK 439          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: M5SRG2_9BACT (Putative secreted protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5SRG2_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 6.280e-16
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   13 NRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            NRFGRPLFQN+ Y DTPV PL K +FVD+ AEPG  H Y V++VNT GL+S+
Sbjct:  396 NRFGRPLFQNLQYSDTPVQPLAKMEFVDRTAEPGVDHDYSVVAVNTMGLESK 447          
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Match: A0A8J7PXJ0_9BACT (Uncharacterized protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7PXJ0_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 6.610e-16
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNTAGLKSR 168
            E+  N FGRP+FQN+ Y DTP  PL+  QF D  AEPGK H Y VI+VNT GLKSR
Sbjct:  259 EQGKNPFGRPVFQNLQYSDTPTQPLVPMQFTDAGAEPGKTHAYRVIAVNTVGLKSR 314          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73894.17505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AGJ3_9PLAN1.630e-2998.21Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A350KJ08_9PLAN1.160e-2581.82Fibronectin type-III domain-containing protein (Fr... [more]
A0A2D5GZ61_9PLAN2.130e-2482.14Fibronectin type-III domain-containing protein n=8... [more]
A0A518FTV9_9PLAN1.020e-2280.36Esterase PHB depolymerase n=3 Tax=Gimesia panareen... [more]
A0A517RK22_9PLAN1.030e-2282.14Fibronectin type-III domain-containing protein n=2... [more]
A0A353DE01_9BACT2.130e-1762.50Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A2V8KV86_9BACT1.080e-1656.36Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A354TKG2_9BACT4.430e-1662.50Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
M5SRG2_9BACT6.280e-1665.38Putative secreted protein n=2 Tax=Rhodopirellula T... [more]
A0A8J7PXJ0_9BACT6.610e-1662.50Uncharacterized protein n=1 Tax=Zavarzinella sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73894contigM-pyrifera_M_contig73894:918..1088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.7
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog344747.PM8797T_21888
KEGG koko:K18650
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.lipolytic protein G-D-S-L family
EggNOG OGs2IYDB@203682,COG2755@1,COG2755@2
EC3.2.1.82
COG Functional cat.E
CAZyGH28
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.6947968-CDS-M-pyrifera_M_contig73894:917..10881622816636.6947968-CDS-M-pyrifera_M_contig73894:917..1088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73894 918..1088 -
1692278090.9965484-CDS-M-pyrifera_M_contig73894:917..10881692278090.9965484-CDS-M-pyrifera_M_contig73894:917..1088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73894 918..1088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73894.17505.1prot_M-pyrifera_M_contig73894.17505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73894 918..1088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73894.17505.1

>prot_M-pyrifera_M_contig73894.17505.1 ID=prot_M-pyrifera_M_contig73894.17505.1|Name=mRNA_M-pyrifera_M_contig73894.17505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
EKPTNRFGRPLFQNMSYGDTPVLPLLKFQFVDKAAEPGKAHQYEVISVNT
AGLKSR*
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mRNA from alignment at M-pyrifera_M_contig73894:918..1088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73894.17505.1 ID=mRNA_M-pyrifera_M_contig73894.17505.1|Name=mRNA_M-pyrifera_M_contig73894.17505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig73894:918..1088- (Macrocystis pyrifera P11B4 male)
GAAAAACCAACCAATCGCTTCGGTCGCCCGCTGTTTCAGAACATGAGCTA CGGTGATACTCCCGTGCTGCCGCTGCTGAAGTTTCAGTTCGTGGACAAAG CCGCTGAACCAGGGAAAGCGCATCAGTATGAAGTGATTTCCGTCAACACG GCAGGGCTGAAATCCAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73894:918..1088-

>mRNA_M-pyrifera_M_contig73894.17505.1 ID=mRNA_M-pyrifera_M_contig73894.17505.1|Name=mRNA_M-pyrifera_M_contig73894.17505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig73894:918..1088- (Macrocystis pyrifera P11B4 male)
GAAAAACCAACCAATCGCTTCGGTCGCCCGCTGTTTCAGAACATGAGCTA
CGGTGATACTCCCGTGCTGCCGCTGCTGAAGTTTCAGTTCGTGGACAAAG
CCGCTGAACCAGGGAAAGCGCATCAGTATGAAGTGATTTCCGTCAACACG
GCAGGGCTGAAATCCAGGTAGGAAAAACCAACCAATCGCTTCGGTCGCCC
GCTGTTTCAGAACATGAGCTACGGTGATACTCCCGTGCTGCCGCTGCTGA
AGTTTCAGTTCGTGGACAAAGCCGCTGAACCAGGGAAAGCGCATCAGTAT
GAAGTGATTTCCGTCAACACGGCAGGGCTGAAATCCAGGTAG
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