mRNA_M-pyrifera_M_contig73781.17483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73781.17483.1
Unique NamemRNA_M-pyrifera_M_contig73781.17483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73781.17483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73781contigM-pyrifera_M_contig73781:541..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue9.7e-07
Seed eggNOG ortholog1173028.ANKO01000246_gene4055
Preferred nametccB2
KEGG koko:K02004,ko:K06218,ko:K15125,ko:K16552,ko:K21449
KEGG TC1.B.18.1,1.B.40.2,3.A.1
KEGG Pathwayko05133,map05133
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tail collar domain protein
EggNOG OGs1G8RJ@1117,COG1566@1,COG1566@2,COG2755@1,COG2755@2,COG2931@1,COG2931@2,COG4675@1,COG4675@2
COG Functional cat.Q
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko02000,ko02048
Exons2
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.361015-CDS-M-pyrifera_M_contig73781:540..7011622816635.361015-CDS-M-pyrifera_M_contig73781:540..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73781 541..701 -
1692278090.2419229-CDS-M-pyrifera_M_contig73781:540..7011692278090.2419229-CDS-M-pyrifera_M_contig73781:540..701Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73781 541..701 -
1622816635.3752248-CDS-M-pyrifera_M_contig73781:770..10291622816635.3752248-CDS-M-pyrifera_M_contig73781:770..1029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73781 771..1029 -
1692278090.254961-CDS-M-pyrifera_M_contig73781:770..10291692278090.254961-CDS-M-pyrifera_M_contig73781:770..1029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73781 771..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73781.17483.1prot_M-pyrifera_M_contig73781.17483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73781 541..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73781.17483.1

>prot_M-pyrifera_M_contig73781.17483.1 ID=prot_M-pyrifera_M_contig73781.17483.1|Name=mRNA_M-pyrifera_M_contig73781.17483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
FEAFTSSNEEDGNDARGVMRVPHGAGLNPNSFTFSIMVRELVVDDLGVEV
ASSGGTAPDGTRRGWKLIFNRCGEWEFRIATGETPTRWSTVYATATVLGS
WSHIAAVYDEATGTQELWVESTLDETHGRATDVNYEPNVR
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mRNA from alignment at M-pyrifera_M_contig73781:541..1029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73781.17483.1 ID=mRNA_M-pyrifera_M_contig73781.17483.1|Name=mRNA_M-pyrifera_M_contig73781.17483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig73781:541..1029- (Macrocystis pyrifera P11B4 male)
TTTGAAGCATTCACTTCTTCCAACGAAGAGGATGGAAATGATGCTCGAGG
GGTCATGCGAGTCCCACATGGTGCTGGACTCAATCCCAACTCCTTTACTT
TCAGTATCATGGTGCGTGAATTAGTTGTGGATGATTTAGGAGTAGAAGTT
GCAAGTTCTGGTGGCACTGCGCCGGATGGAACGAGACGTGGTTGGAAACT
GATTTTCAATCGTTGTGGAGAGTGGGAATTTCGGATTGCAACTGGTGAGA
CACCAACACGTGATGACTCAGCGACACCAGATTGTGATTTCTCACTTGAC
ATTCATCGGGCTGCCATGTTACAAGCAGGTTGGAGTACAGTATATGCAAC
TGCTACCGTCCTTGGTTCATGGTCTCACATTGCTGCAGTGTATGATGAAG
CAACTGGAACCCAAGAATTGTGGGTCGAATCCACGTTGGATGAAACCCAT
GGTCGGGCTACTGATGTCAACTATGAACCAAATGTTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73781:541..1029-

>mRNA_M-pyrifera_M_contig73781.17483.1 ID=mRNA_M-pyrifera_M_contig73781.17483.1|Name=mRNA_M-pyrifera_M_contig73781.17483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig73781:541..1029- (Macrocystis pyrifera P11B4 male)
TTTGAAGCATTCACTTCTTCCAACGAAGAGGATGGAAATGATGCTCGAGG
GGTCATGCGAGTCCCACATGGTGCTGGACTCAATCCCAACTCCTTTACTT
TCAGTATCATGGTGCGTGAATTAGTTGTGGATGATTTAGGAGTAGAAGTT
GCAAGTTCTGGTGGCACTGCGCCGGATGGAACGAGACGTGGTTGGAAACT
GATTTTCAATCGTTGTGGAGAGTGGGAATTTCGGATTGCAACTGGTGAGA
CACCAACACTTTGAAGCATTCACTTCTTCCAACGAAGAGGATGGAAATGA
TGCTCGAGGGGTCATGCGAGTCCCACATGGTGCTGGACTCAATCCCAACT
CCTTTACTTTCAGTATCATGGTGCGTGAATTAGTTGTGGATGATTTAGGA
GTAGAAGTTGCAAGTTCTGGTGGCACTGCGCCGGATGGAACGAGACGTGG
TTGGAAACTGATTTTCAATCGTTGTGGAGAGTGGGAATTTCGGATTGCAA
CTGGTGAGACACCAACACGTTGGAGTACAGTATATGCAACTGCTACCGTC
CTTGGTTCATGGTCTCACATTGCTGCAGTGTATGATGAAGCAACTGGAAC
CCAAGAATTGTGGGTCGAATCCACGTTGGATGAAACCCATGGTCGGGCTA
CTGATGTCAACTATGAACCAAATGTTCGTGTTGGAGTACAGTATATGCAA
CTGCTACCGTCCTTGGTTCATGGTCTCACATTGCTGCAGTGTATGATGAA
GCAACTGGAACCCAAGAATTGTGGGTCGAATCCACGTTGGATGAAACCCA
TGGTCGGGCTACTGATGTCAACTATGAACCAAATGTTCGT
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