mRNA_M-pyrifera_M_contig73710.17470.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73710.17470.1
Unique NamemRNA_M-pyrifera_M_contig73710.17470.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A7S2DLT4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DLT4_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 1.380e-16
Identity = 46/93 (49.46%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDED 279
            +++ ELDR  +RL SL SVRPAF+ E+E+LE+EL + +E+YV   RNL+YL+ EL    R E+E+ + + RAL+R+Q++LR+EE +  RG+ED
Sbjct:   52 KKKQELDRCKKRLGSLASVRPAFMDEYEQLEQELERYYEQYVGRFRNLDYLDHELDQLNREEKERMEENDRALKRIQKRLRDEEWRLLRGEED 144          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A507DT24_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DT24_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 4.000e-16
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   13 ELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVG---EDVFSGRG 309
            ELDRA +RL SLQSVRPA++ E+ER+EK+L   +  Y+   RN+ YLE +L  H R E++K + +  +L+++Q KL+EEE++  RGD+D+G   EDV  G G
Sbjct:  220 ELDRAQKRLLSLQSVRPAYMDEYERIEKDLGALYNAYMENFRNVTYLEQQLDEHNRVEQDKFEETEESLKKMQMKLQEEEMRLLRGDKDLGSVYEDVGRGNG 321          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A8J2AKH4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AKH4_9DINO)

HSP 1 Score: 85.1 bits (209), Expect = 5.220e-16
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDED 279
            +++ ELDR S RL  L SVRPAF+ E+E+LE+ELA+ ++ YV   RNL+YLE EL    + E EK + + R L+RLQ++LREEE +  RGDED
Sbjct:  227 KKKQELDRCSARLGQLTSVRPAFMDEYEKLEEELAKVYDSYVQRFRNLDYLEYELDHLNKEEEEKMEQNARELKRLQKRLREEEWRMLRGDED 319          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A7S3XAU6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XAU6_9SPIT)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-15
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGE 288
            ++++ELDR  +RLASLQSVRPA + EFERLE EL+Q++  YV   RNL YLEAEL A    E E    S R L+ +QR+LREEELK  RG   V E
Sbjct:  247 KKKTELDRHQKRLASLQSVRPAHMDEFERLEAELSQQYSVYVGHWRNLSYLEAELEAIRADEAEAVADSDRRLQAMQRRLREEELKVLRGQAKVDE 342          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A7S4BV13_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BV13_CHRCT)

HSP 1 Score: 82.8 bits (203), Expect = 4.830e-15
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGE 288
            ++++ELDR ++RL SLQ+VRPAF+ E+E+LE EL+Q++  YV   RNL YLE+EL A   +E EK   S R L  +QR+LREEELK  RG   V E
Sbjct:  217 KKKTELDRHTKRLQSLQTVRPAFMDEYEQLEGELSQQYAHYVQNWRNLSYLESELDAINMQEAEKIAESDRQLRLMQRRLREEELKILRGQAKVDE 312          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A7S0JHU3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JHU3_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 5.390e-15
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGE 288
            ++++ELDR  +RL SLQ+VRPAF+ E+E+LE EL+ ++ +YV+  RNL YLE+EL A   +E EK   S R L  +QR+LREEELK  RG   V E
Sbjct:  217 KKKTELDRHQKRLQSLQTVRPAFMDEYEQLESELSAQYAQYVMNWRNLSYLESELDAINLQEAEKIAESDRQLRLMQRRLREEELKILRGQAKVDE 312          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: UPI0000521F66 (clusterin-associated protein 1 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI0000521F66)

HSP 1 Score: 82.0 bits (201), Expect = 6.680e-15
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGEDVFSGRGRMAGGDE 330
            +++SELDR+ +RL++LQSVRPAF+ EFERLE+EL  ++  Y++  RN+ YLE ++  H R+E+ +   +  +L R+Q +LREEE K    D  +  D   G G    G++
Sbjct:  219 KRKSELDRSKKRLSTLQSVRPAFMDEFERLEEELKLQYASYLIKFRNMTYLEHQMEDHNRQEQARMNENELSLRRIQTRLREEEKKVILNDSFLDNDALDGLGLGGSGED 328          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A0L0HLU9_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HLU9_SPIPD)

HSP 1 Score: 82.0 bits (201), Expect = 7.220e-15
Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   13 ELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDV 282
            ELDRA +RL SLQSVRPA++ E+ER+E +L   +E Y+   RNL YLE +L  + R+E++K + +  +L+R+Q +LREEELK  +GD+++
Sbjct:  219 ELDRAQKRLQSLQSVRPAYMDEYERIEADLTNLYETYMERFRNLTYLEQQLDEYNRQEQDKFEETEESLKRMQTRLREEELKLLKGDKEM 308          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A813E4T8_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E4T8_POLGL)

HSP 1 Score: 81.3 bits (199), Expect = 1.390e-14
Identity = 45/93 (48.39%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDED 279
            ++Q EL+R  +RL SL SVRPAF+ E+E+LE+EL + +E+YV   RNL+YLE E+      E+E+ + + RAL+R+Q++LR+EE +  RG+ED
Sbjct:  225 KKQQELERCRKRLGSLASVRPAFMDEYEQLEEELERYYEQYVGRFRNLDYLEHEIDVLNSEEKERMEENDRALKRMQKRLRDEEWRLLRGEED 317          
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Match: A0A507FC19_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FC19_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 2.680e-14
Identity = 44/100 (44.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   13 ELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEYLEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGEDVFSGRGR 312
            EL+RA +RL SLQ VRPA++ E+E++E +L + +E Y+   RNL YLE +L  H+R E++K + + ++L+++Q +LREEE++  RGD+++ E V    GR
Sbjct:  219 ELERAEKRLKSLQGVRPAYMDEYEKIEVDLVKLYEIYMDKFRNLSYLEQQLDEHDRIEQDKFEETEQSLKKMQSRLREEEMQLLRGDKEMHESVNGAGGR 318          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73710.17470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DLT4_9DINO1.380e-1649.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A507DT24_9FUNG4.000e-1648.04Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A8J2AKH4_9DINO5.220e-1652.69Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S3XAU6_9SPIT2.170e-1556.25Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4BV13_CHRCT4.830e-1553.13Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S0JHU3_9EUKA5.390e-1552.08Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
UPI0000521F666.680e-1541.82clusterin-associated protein 1 n=1 Tax=Ciona intes... [more]
A0A0L0HLU9_SPIPD7.220e-1548.89Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A813E4T8_POLGL1.390e-1448.39Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A507FC19_9FUNG2.680e-1444.00Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73710contigM-pyrifera_M_contig73710:3..704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.1
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog109760.SPPG_02878T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Allomyces macrogynus ATCC 38327
EggNOG OGs39F96@33154,3PED7@4751,KOG3647@1,KOG3647@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons2
Model size582
Cds size582
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.736519-CDS-M-pyrifera_M_contig73710:2..3091622816634.736519-CDS-M-pyrifera_M_contig73710:2..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73710 3..309 +
1692278089.909983-CDS-M-pyrifera_M_contig73710:2..3091692278089.909983-CDS-M-pyrifera_M_contig73710:2..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73710 3..309 +
1622816634.7473116-CDS-M-pyrifera_M_contig73710:429..7041622816634.7473116-CDS-M-pyrifera_M_contig73710:429..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73710 430..704 +
1692278089.9285705-CDS-M-pyrifera_M_contig73710:429..7041692278089.9285705-CDS-M-pyrifera_M_contig73710:429..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73710 430..704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73710.17470.1prot_M-pyrifera_M_contig73710.17470.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73710 3..704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73710.17470.1

>prot_M-pyrifera_M_contig73710.17470.1 ID=prot_M-pyrifera_M_contig73710.17470.1|Name=mRNA_M-pyrifera_M_contig73710.17470.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
RQQSELDRASRRLASLQSVRPAFLGEFERLEKELAQEFEKYVVTHRNLEY
LEAELSAHERREREKSQASRRALERLQRKLREEELKAFRGDEDVGEDVFS
GRGRMAGGDEDQDSDSTSSSLSSPSETSSSSSDLDDEEEEEEEDRQPGAP
RPRGSVPQPRARHGDQDSDESDDDLGDFTPSEDDEEEDDDDMF*
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mRNA from alignment at M-pyrifera_M_contig73710:3..704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73710.17470.1 ID=mRNA_M-pyrifera_M_contig73710.17470.1|Name=mRNA_M-pyrifera_M_contig73710.17470.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig73710:3..704+ (Macrocystis pyrifera P11B4 male)
CGGCAGCAGTCTGAGCTGGACCGCGCGAGCCGGCGGCTGGCGAGTCTGCA GAGCGTGCGTCCTGCGTTTTTGGGCGAGTTTGAGCGTTTGGAGAAAGAGT TGGCGCAGGAGTTTGAAAAGTACGTGGTGACGCACCGCAACCTCGAGTAC TTGGAGGCGGAGTTGAGTGCCCACGAGCGGAGGGAGCGGGAGAAGAGCCA GGCGAGTCGACGGGCCCTGGAGCGCCTGCAGCGCAAGCTGCGAGAAGAAG AGCTCAAGGCCTTTCGCGGCGACGAAGACGTGGGCGAGGACGTGTTCAGC GGGAGAGGTGCCAGAGGCGGCAGTGGAGGAGCGGCGGATGGGGCAAGACG ACCAGCAGGTGCGCATGGCGCCAGGAGCAGAGGACGGCCAACATCAAGAG AAAGGCCGCATGCCCCGGTCGCCAGAGGAAGGATGGCCGGAGGAGACGAA GACCAGGACTCGGATTCCACATCCTCCTCCCTCTCCAGCCCCTCAGAAAC CTCATCCTCCTCCTCCGACCTCGACGACGAAGAAGAAGAAGAAGAGGAAG ACCGCCAGCCAGGCGCTCCCAGGCCCAGAGGAAGCGTCCCACAACCCAGA GCAAGACACGGAGACCAAGACTCGGACGAATCCGACGACGACCTCGGAGA CTTTACTCCTTCCGAAGACGACGAAGAAGAAGACGACGACGACATGTTCT GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73710:3..704+

>mRNA_M-pyrifera_M_contig73710.17470.1 ID=mRNA_M-pyrifera_M_contig73710.17470.1|Name=mRNA_M-pyrifera_M_contig73710.17470.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig73710:3..704+ (Macrocystis pyrifera P11B4 male)
CGGCAGCAGTCTGAGCTGGACCGCGCGAGCCGGCGGCTGGCGAGTCTGCA
GAGCGTGCGTCCTGCGTTTTTGGGCGAGTTTGAGCGTTTGGAGAAAGAGT
TGGCGCAGGAGTTTGAAAAGTACGTGGTGACGCACCGCAACCTCGAGTAC
TTGGAGGCGGAGTTGAGTGCCCACGAGCGGAGGGAGCGGGAGAAGAGCCA
GGCGAGTCGACGGGCCCTGGAGCGCCTGCAGCGCAAGCTGCGAGAAGAAG
AGCTCAAGGCCTTTCGCGGCGACGAAGACGTGGGCGAGGACGTGTTCAGC
GGGAGAGCGGCAGCAGTCTGAGCTGGACCGCGCGAGCCGGCGGCTGGCGA
GTCTGCAGAGCGTGCGTCCTGCGTTTTTGGGCGAGTTTGAGCGTTTGGAG
AAAGAGTTGGCGCAGGAGTTTGAAAAGTACGTGGTGACGCACCGCAACCT
CGAGTACTTGGAGGCGGAGTTGAGTGCCCACGAGCGGAGGGAGCGGGAGA
AGAGCCAGGCGAGTCGACGGGCCCTGGAGCGCCTGCAGCGCAAGCTGCGA
GAAGAAGAGCTCAAGGCCTTTCGCGGCGACGAAGACGTGGGCGAGGACGT
GTTCAGCGGGAGAGGAAGGATGGCCGGAGGAGACGAAGACCAGGACTCGG
ATTCCACATCCTCCTCCCTCTCCAGCCCCTCAGAAACCTCATCCTCCTCC
TCCGACCTCGACGACGAAGAAGAAGAAGAAGAGGAAGACCGCCAGCCAGG
CGCTCCCAGGCCCAGAGGAAGCGTCCCACAACCCAGAGCAAGACACGGAG
ACCAAGACTCGGACGAATCCGACGACGACCTCGGAGACTTTACTCCTTCC
GAAGACGACGAAGAAGAAGACGACGACGACATGTTCTGAGAAGGATGGCC
GGAGGAGACGAAGACCAGGACTCGGATTCCACATCCTCCTCCCTCTCCAG
CCCCTCAGAAACCTCATCCTCCTCCTCCGACCTCGACGACGAAGAAGAAG
AAGAAGAGGAAGACCGCCAGCCAGGCGCTCCCAGGCCCAGAGGAAGCGTC
CCACAACCCAGAGCAAGACACGGAGACCAAGACTCGGACGAATCCGACGA
CGACCTCGGAGACTTTACTCCTTCCGAAGACGACGAAGAAGAAGACGACG
ACGACATGTTCTGA
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