mRNA_M-pyrifera_M_contig73707.17467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73707.17467.1
Unique NamemRNA_M-pyrifera_M_contig73707.17467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6B1C3H3_9ACTN (ABC transporter substrate-binding protein n=7 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1C3H3_9ACTN)

HSP 1 Score: 148 bits (374), Expect = 2.740e-38
Identity = 88/221 (39.82%), Postives = 126/221 (57.01%), Query Frame = 1
Query:   58 VVDPLAPVRGITDDTIRVGIAIPDVSAFSNSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFSVLSDADAALLGGVDFLALELADAKVAITTGEDGGSQQRAEELETLLRFSDIDVVANTQGSVLYTADPAAALAEQDRFAEIWTSSGATHVIGV 720
            VV+  A  RG+T DTI +G+AI DV+ F++ GD +ARYQ + DA NA GG++GR +E++  +WD+LD+  F+AAC  LT+D EVF V+   P G+G + C+ +L +TI IN  +LD  ++  SDGRL +       +LL G++ L  EL  A+V I      G  + AEEL    R   ++V     G      D  AA AE D   E W +     +I V
Sbjct:  104 VVELTATARGVTADTITLGVAITDVTVFADVGDILARYQPLVDATNAAGGINGRRVEIITEQWDILDTVAFEAACVALTEDNEVFLVLGFMPAGWGSIFCYIDLNETIVINTSDLDQQDLDMSDGRLITTRPYQFGSLLAGLELLRPELEGARVVIYGASVDGRIETAEELLRSFRAEILEVTRQQIGG----EDLIAAEAEIDIHVERWRTHNPDWIINV 320          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6L7PUC3_9ACTN (Amino acid ABC transporter substrate-binding protein n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7PUC3_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 7.130e-19
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   73 APVRGITDDTIRVGIAIPDVSAFS-NSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFS 444
            A  RG+T+  IR+GI   D S F  + GD  A++QV  DA+NA GG++GR+L   +   D++ S G DAAC K  +DE VFA +    +   +  C+TEL DTI +N  ++    +SRS+G LF+
Sbjct:   77 ASFRGVTETEIRIGITSLDASMFGFDQGDLAAKWQVAVDAVNAAGGINGRMLVPFIEVIDVIGSVGADAACVKFVEDEMVFAFVGWLRED--NELCYTELNDTIAVNANDVTPDAISRSNGMLFA 199          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6L7SH27_9ACTN (Amino acid ABC transporter substrate-binding protein n=6 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7SH27_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.270e-15
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   73 APVRGITDDTIRVGIAIPDVSAFS-NSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFS 444
            A  RG+T+  IR+GI   D S F  + GD  A++QV  DA+NA+GG+ GR+L   +    ++ S   +AAC +  +DE VFA +    +   +  C+TEL DTI +N  ++    ++RS+G LF+
Sbjct:   89 ASFRGVTETEIRIGITSLDASMFGFDQGDLAAKWQVAVDAVNAKGGIHGRMLVPFIEVIQVIGSVEAEAACVRFVEDEMVFAFVGWLRED--NELCYTELNDTIAVNANDVSEEAINRSNGMLFA 211          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6B1GZK3_9ACTN (Uncharacterized protein n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1GZK3_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 2.760e-14
Identity = 44/125 (35.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   73 APVRGITDDTIRVGIAIPDVSAFS-NSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFS 444
            A  RG+T+  IR+G+   D   F  + GD  +++QV  DA+NA+GG++GR+L   +   D++ +   DA C K  +D+ VFA +    +   +  C+TE  +TI +NG ++    +SRS+G LF+
Sbjct:   97 ASFRGVTETEIRIGMTSLDAEMFGFDQGDLASKWQVAVDAVNAKGGINGRMLVPFIDVLDVIGTVEADATCVKFVEDKMVFAFVGWLRED--NELCYTERNNTIAVNGNDVTPEAISRSNGLLFA 219          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A7K1Z5X4_9ACTN (ABC transporter substrate-binding protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z5X4_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 4.440e-13
Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = 1
Query:   82 RGITDDTIRVGIAIPDVS--AFSNSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFSVLSDADAALLGGVDFL--ALELADAKVAITTGEDGGSQQRAEELETLLRFSDIDVVANTQGSVLYTADPAAALAEQDRFAEIWTSSGATHVIGV 720
            RG+T +TI+VG+   DV+   +S S +  A +QV A  INA+GGV GR++E+V      +D+   +AAC +LT+DEEVF  +    +      C+T L DTITIN    +     +S   +   L  A+ A+   +  L  +  L   KVA++      + + A+ ++ +L  + I+VV+ T      ++D  A   E D   E W S GA  V+ V
Sbjct:    8 RGVTAETIKVGVPYSDVTFIGWSPSHEAAAIWQVAAGTINAQGGVLGRMIEIVTIGVSPVDAVAQEAACVELTEDEEVFVAMGVIRNEIPL--CYTVLHDTITINTYQTNPEIFEQSVAPMIGFLPLAERAVDAQLATLINSGRLEGHKVALSATPT--TIELADTMKGILEGAGIEVVSVTNFQSP-SSDQFAIDNEMDVNFERWVSEGADAVVAV 219          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6B1B472_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B472_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 4.730e-13
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   82 RGITDDTIRVGIAIPDVS--AFSNSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITIN 390
            RG+T +TI+VG+   DV+   +S S +  A +QV A  INA+GGV GR++E+V      +D+   +AAC +LT+DEEVF  +    +      C+T L DTITIN
Sbjct:   97 RGVTAETIKVGVPYSDVTFIGWSPSHEAAAIWQVAAGTINAQGGVLGRMIEIVTIGVSPVDAVAQEAACVELTEDEEVFVAMGVIRNEIPL--CYTVLHDTITIN 199          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A7X6ARU1_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARU1_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 5.490e-12
Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   73 APVRGITDDTIRVGIAIPDVSAFSNSG------DQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMG----CFTELGDTITI 387
            A  RG+T+ +I+VG+A+PD  A   +G      D    +Q   D IN EGGV GRL++ V   +D  D+T  D AC +  +D EVF V+      +G +G    C T L +T+ +
Sbjct:   96 ASFRGVTETSIKVGVAVPDFDALQAAGISNYQGDAEIAFQAFFDEINDEGGVHGRLIDPVYVSFDFTDATTQDEACSRFAEDHEVFIVL------YGLLGQSNLCLTNLHETMVM 204          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: D3D3E5_9ACTN (Peripla_BP_6 domain-containing protein n=1 Tax=Frankia sp. EUN1f TaxID=102897 RepID=D3D3E5_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 5.050e-11
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   73 APVRGITDDTIRVGIAIPDVSAFS-----NSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMGCFTELGDTITING 393
            A   G+TDD+I +G   PD+         + GD  A +Q + D +N  GG++GR +  V    DLL   G    C +LT+DE+VFAV+    D   D+ C+ +  +TI + G
Sbjct:   50 ATAPGVTDDSITIGFTYPDLETVRQFVDIDHGDYEAVFQALVDKVNENGGINGRTVVPVYGAIDLLAPAGAQRTCVRLTEDEDVFAVLGTFTDD--DVECYVQTHETIVVGG 159          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: A0A6B1C0M0_9ACTN (ABC transporter substrate-binding protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1C0M0_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 2.480e-10
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   82 RGITDDTIRVGIAIPDVS-----AFSNS--GDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVITRTPDGFGDMG-------CFTELGDTITING 393
            RG+T DTI VG++  D+       FS +  GDQ    Q +AD IN  GG++GR LE+V  ++  + +T  +AAC +LT+D EVFAV+      FG +G       C  +  +TI + G
Sbjct:  100 RGVTADTITVGVSYLDIDQLVELGFSPASWGDQELVIQALADDINERGGINGRRLEVVTDKYSPIGATEAEAACLRLTEDNEVFAVL------FGFLGPAEVANTCIVDQQETILVGG 211          
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Match: UPI0017DC779B (ABC transporter substrate-binding protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=UPI0017DC779B)

HSP 1 Score: 65.5 bits (158), Expect = 6.860e-9
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   85 GITDDTIRVGIAIPDVSAF-----SNSGDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQDEEVFAVI 321
            G+TDD+I+VG+  PD+SA      ++ GD  A Y  +   IN  GG++GR +  V  + ++L        C KLTQDE+VFAVI
Sbjct:   49 GVTDDSIKVGVVYPDLSAAKQFIKTDHGDYEATYTALIKKINDAGGINGRKIVPVFGKINVLSPAAAQETCVKLTQDEKVFAVI 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73707.17467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1C3H3_9ACTN2.740e-3839.82ABC transporter substrate-binding protein n=7 Tax=... [more]
A0A6L7PUC3_9ACTN7.130e-1941.60Amino acid ABC transporter substrate-binding prote... [more]
A0A6L7SH27_9ACTN1.270e-1537.60Amino acid ABC transporter substrate-binding prote... [more]
A0A6B1GZK3_9ACTN2.760e-1435.20Uncharacterized protein n=4 Tax=Acidimicrobiia bac... [more]
A0A7K1Z5X4_9ACTN4.440e-1332.72ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A6B1B472_9ACTN4.730e-1342.86Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X6ARU1_9ACTN5.490e-1236.52Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
D3D3E5_9ACTN5.050e-1134.82Peripla_BP_6 domain-containing protein n=1 Tax=Fra... [more]
A0A6B1C0M0_9ACTN2.480e-1038.14ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI0017DC779B6.860e-941.67ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73707contigM-pyrifera_M_contig73707:159..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.8
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog298654.FraEuI1c_3420
KEGG rclassRC00049
KEGG koko:K12373
KEGG ReactionR00022,R06004,R11316
KEGG Pathwayko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142
KEGG ModuleM00079
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Periplasmic binding protein
EggNOG OGs2HZXR@201174,COG0683@1,COG0683@2
EC3.2.1.52
COG Functional cat.E
CAZyGH20
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Exons1
Model size732
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.549457-CDS-M-pyrifera_M_contig73707:158..8901622816634.549457-CDS-M-pyrifera_M_contig73707:158..890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73707 159..890 +
1692278089.7801754-CDS-M-pyrifera_M_contig73707:158..8901692278089.7801754-CDS-M-pyrifera_M_contig73707:158..890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73707 159..890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73707.17467.1prot_M-pyrifera_M_contig73707.17467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73707 159..890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73707.17467.1

>prot_M-pyrifera_M_contig73707.17467.1 ID=prot_M-pyrifera_M_contig73707.17467.1|Name=mRNA_M-pyrifera_M_contig73707.17467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
DADDTSETDDTAEADAPAEVVDPLAPVRGITDDTIRVGIAIPDVSAFSNS
GDQVARYQVVADAINAEGGVDGRLLELVVAEWDLLDSTGFDAACQKLTQD
EEVFAVITRTPDGFGDMGCFTELGDTITINGLNLDAGEVSRSDGRLFSVL
SDADAALLGGVDFLALELADAKVAITTGEDGGSQQRAEELETLLRFSDID
VVANTQGSVLYTADPAAALAEQDRFAEIWTSSGATHVIGVGNGA
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mRNA from alignment at M-pyrifera_M_contig73707:159..890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73707.17467.1 ID=mRNA_M-pyrifera_M_contig73707.17467.1|Name=mRNA_M-pyrifera_M_contig73707.17467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig73707:159..890+ (Macrocystis pyrifera P11B4 male)
GACGCTGACGACACATCCGAGACGGACGACACCGCCGAGGCGGATGCACC CGCCGAGGTCGTCGACCCGCTCGCTCCCGTGCGCGGCATCACCGATGACA CCATCCGCGTCGGGATCGCCATCCCCGACGTGAGCGCCTTCTCGAACAGC GGCGATCAGGTGGCCCGCTACCAGGTCGTCGCCGACGCCATCAACGCCGA AGGAGGCGTGGACGGGCGCCTGCTCGAGCTCGTCGTCGCCGAGTGGGATC TGCTCGACTCCACCGGCTTCGACGCCGCCTGCCAGAAGCTCACGCAGGAC GAAGAAGTGTTCGCCGTCATCACCAGAACCCCGGACGGCTTCGGCGACAT GGGTTGCTTCACGGAGCTTGGCGACACGATCACCATCAACGGGCTGAACC TCGATGCGGGAGAGGTCTCCCGTTCCGACGGAAGGCTCTTCAGCGTGCTG TCCGACGCCGATGCCGCCCTGCTCGGCGGCGTCGACTTCCTCGCCCTCGA ACTCGCCGATGCCAAGGTGGCCATCACGACCGGTGAGGACGGCGGCAGTC AGCAACGGGCCGAGGAGCTGGAAACACTGCTCCGCTTCAGCGACATCGAC GTCGTCGCCAACACACAGGGGTCCGTGTTGTACACGGCCGACCCGGCCGC TGCGCTCGCCGAACAAGACCGTTTCGCTGAGATCTGGACCAGCAGTGGGG CGACCCACGTGATCGGCGTCGGCAACGGCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73707:159..890+

>mRNA_M-pyrifera_M_contig73707.17467.1 ID=mRNA_M-pyrifera_M_contig73707.17467.1|Name=mRNA_M-pyrifera_M_contig73707.17467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig73707:159..890+ (Macrocystis pyrifera P11B4 male)
GACGCTGACGACACATCCGAGACGGACGACACCGCCGAGGCGGATGCACC
CGCCGAGGTCGTCGACCCGCTCGCTCCCGTGCGCGGCATCACCGATGACA
CCATCCGCGTCGGGATCGCCATCCCCGACGTGAGCGCCTTCTCGAACAGC
GGCGATCAGGTGGCCCGCTACCAGGTCGTCGCCGACGCCATCAACGCCGA
AGGAGGCGTGGACGGGCGCCTGCTCGAGCTCGTCGTCGCCGAGTGGGATC
TGCTCGACTCCACCGGCTTCGACGCCGCCTGCCAGAAGCTCACGCAGGAC
GAAGAAGTGTTCGCCGTCATCACCAGAACCCCGGACGGCTTCGGCGACAT
GGGTTGCTTCACGGAGCTTGGCGACACGATCACCATCAACGGGCTGAACC
TCGATGCGGGAGAGGTCTCCCGTTCCGACGGAAGGCTCTTCAGCGTGCTG
TCCGACGCCGATGCCGCCCTGCTCGGCGGCGTCGACTTCCTCGCCCTCGA
ACTCGCCGATGCCAAGGTGGCCATCACGACCGGTGAGGACGGCGGCAGTC
AGCAACGGGCCGAGGAGCTGGAAACACTGCTCCGCTTCAGCGACATCGAC
GTCGTCGCCAACACACAGGGGTCCGTGTTGTACACGGCCGACCCGGCCGC
TGCGCTCGCCGAACAAGACCGTTTCGCTGAGATCTGGACCAGCAGTGGGG
CGACCCACGTGATCGGCGTCGGCAACGGCGCGGACGCTGACGACACATCC
GAGACGGACGACACCGCCGAGGCGGATGCACCCGCCGAGGTCGTCGACCC
GCTCGCTCCCGTGCGCGGCATCACCGATGACACCATCCGCGTCGGGATCG
CCATCCCCGACGTGAGCGCCTTCTCGAACAGCGGCGATCAGGTGGCCCGC
TACCAGGTCGTCGCCGACGCCATCAACGCCGAAGGAGGCGTGGACGGGCG
CCTGCTCGAGCTCGTCGTCGCCGAGTGGGATCTGCTCGACTCCACCGGCT
TCGACGCCGCCTGCCAGAAGCTCACGCAGGACGAAGAAGTGTTCGCCGTC
ATCACCAGAACCCCGGACGGCTTCGGCGACATGGGTTGCTTCACGGAGCT
TGGCGACACGATCACCATCAACGGGCTGAACCTCGATGCGGGAGAGGTCT
CCCGTTCCGACGGAAGGCTCTTCAGCGTGCTGTCCGACGCCGATGCCGCC
CTGCTCGGCGGCGTCGACTTCCTCGCCCTCGAACTCGCCGATGCCAAGGT
GGCCATCACGACCGGTGAGGACGGCGGCAGTCAGCAACGGGCCGAGGAGC
TGGAAACACTGCTCCGCTTCAGCGACATCGACGTCGTCGCCAACACACAG
GGGTCCGTGTTGTACACGGCCGACCCGGCCGCTGCGCTCGCCGAACAAGA
CCGTTTCGCTGAGATCTGGACCAGCAGTGGGGCGACCCACGTGATCGGCG
TCGGCAACGGCGCG
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