mRNA_M-pyrifera_M_contig73652.17452.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73652.17452.1
Unique NamemRNA_M-pyrifera_M_contig73652.17452.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: D7FTH5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1
Query:   19 NEISEAFPEVPWVFVFRDPVEVMVSNLKSLAG 114
             +ISEA+PEVPWVFVFRDPVEVMVSNLKS AG
Sbjct:  280 KQISEAYPEVPWVFVFRDPVEVMVSNLKSYAG 311          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: B9XBL0_PEDPL (Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XBL0_PEDPL)

HSP 1 Score: 54.7 bits (130), Expect = 1.350e-7
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 1
Query:   25 ISEAFPEVPWVFVFRDPVEVMVSNLKSLAG 114
            I +AFP+VPW+FV+R+PVEV+VSNLK LAG
Sbjct:  164 IHKAFPDVPWIFVYREPVEVIVSNLKQLAG 193          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: A0A7S2S3F9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3F9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.330e-6
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    7 SRYINEISEAFPEVPWVFVFRDPVEVMVSNLK 102
            ++YI+    AFPEVPW+FV+RDPV+VM+S+LK
Sbjct:  253 TKYIDIARMAFPEVPWIFVYRDPVQVMMSHLK 284          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: A0A7S1ZRE9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRE9_TRICV)

HSP 1 Score: 48.9 bits (115), Expect = 8.390e-6
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   16 INEISEAFPEVPWVFVFRDPVEVMVSNLK 102
            I    EAFPE PW+FV+RDPV+VM+S+LK
Sbjct:    2 IGAFREAFPETPWIFVYRDPVQVMMSHLK 30          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: K0RCZ6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCZ6_THAOC)

HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    7 SRYINEISEAFPEVPWVFVFRDPVEVMVSNL 99
            S+ IN   +AFP+VPW+F+FRDPV+ M+S+L
Sbjct:  328 SKRINLFQQAFPDVPWIFIFRDPVQTMMSHL 358          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 48.1 bits (113), Expect = 2.840e-5
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 1
Query:   28 SEAFPEVPWVFVFRDPVEVMVSNLK 102
            +EAFPEVPW+FV+RDPVEVM S+ K
Sbjct:  219 TEAFPEVPWMFVYRDPVEVMASHFK 243          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 2.850e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1
Query:   25 ISEAFPEVPWVFVFRDPVEVMVSNLKSLAG 114
            + +A+PEV WV++FRDPVEVMVSNLK  A 
Sbjct:  193 MMKAYPEVGWVYLFRDPVEVMVSNLKCFAN 222          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.850e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1
Query:   25 ISEAFPEVPWVFVFRDPVEVMVSNLKSLAG 114
            + +A+PEV WV++FRDPVEVMVSNLK   G
Sbjct:  317 MMKAYPEVGWVYLFRDPVEVMVSNLKGAYG 346          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: A0A7S2PC56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PC56_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 4.240e-5
Identity = 18/36 (50.00%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    7 SRYINEISEAFPEVPWVFVFRDPVEVMVSNLKSLAG 114
            S +++ +  AFP+VPW+FV+RDPV+VM+S+L + A 
Sbjct:  115 SLHVDIVQLAFPDVPWIFVYRDPVQVMMSHLANGAN 150          
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Match: A0A7S3QBV4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBV4_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/32 (53.12%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    7 SRYINEISEAFPEVPWVFVFRDPVEVMVSNLK 102
            S+ I+  +EA+PE PW++V+R+PV+VM+S+LK
Sbjct:  301 SKSIHLFTEAYPETPWIYVYREPVQVMMSHLK 332          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73652.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTH5_ECTSI1.040e-1087.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B9XBL0_PEDPL1.350e-773.33Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Pedo... [more]
A0A7S2S3F9_9STRA2.330e-662.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1ZRE9_TRICV8.390e-665.52Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0RCZ6_THAOC1.110e-558.06Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
F2UI36_SALR52.840e-576.00JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
D7G7C8_ECTSI2.850e-566.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3E4_9PHAE2.850e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PC56_9STRA4.240e-550.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3QBV4_9STRA5.330e-553.13Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73652contigM-pyrifera_M_contig73652:126..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.6704373-CDS-M-pyrifera_M_contig73652:125..2391622816633.6704373-CDS-M-pyrifera_M_contig73652:125..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73652 126..239 +
1692278089.2891424-CDS-M-pyrifera_M_contig73652:125..2391692278089.2891424-CDS-M-pyrifera_M_contig73652:125..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73652 126..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73652.17452.1prot_M-pyrifera_M_contig73652.17452.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73652 126..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73652.17452.1

>prot_M-pyrifera_M_contig73652.17452.1 ID=prot_M-pyrifera_M_contig73652.17452.1|Name=mRNA_M-pyrifera_M_contig73652.17452.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MPSRYINEISEAFPEVPWVFVFRDPVEVMVSNLKSLAG
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mRNA from alignment at M-pyrifera_M_contig73652:126..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73652.17452.1 ID=mRNA_M-pyrifera_M_contig73652.17452.1|Name=mRNA_M-pyrifera_M_contig73652.17452.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig73652:126..239+ (Macrocystis pyrifera P11B4 male)
ATGCCTTCCAGGTACATCAACGAGATATCTGAGGCTTTCCCGGAAGTTCC GTGGGTGTTTGTCTTCCGAGATCCGGTGGAGGTGATGGTGTCCAACCTCA AGTCCCTCGCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73652:126..239+

>mRNA_M-pyrifera_M_contig73652.17452.1 ID=mRNA_M-pyrifera_M_contig73652.17452.1|Name=mRNA_M-pyrifera_M_contig73652.17452.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig73652:126..239+ (Macrocystis pyrifera P11B4 male)
ATGCCTTCCAGGTACATCAACGAGATATCTGAGGCTTTCCCGGAAGTTCC
GTGGGTGTTTGTCTTCCGAGATCCGGTGGAGGTGATGGTGTCCAACCTCA
AGTCCCTCGCGGGGATGCCTTCCAGGTACATCAACGAGATATCTGAGGCT
TTCCCGGAAGTTCCGTGGGTGTTTGTCTTCCGAGATCCGGTGGAGGTGAT
GGTGTCCAACCTCAAGTCCCTCGCGGGG
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