mRNA_M-pyrifera_M_contig73623.17447.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73623.17447.1
Unique NamemRNA_M-pyrifera_M_contig73623.17447.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A851NHB4_9GALL (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851NHB4_9GALL)

HSP 1 Score: 95.1 bits (235), Expect = 3.630e-20
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   91 ELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANI 387
            E+ R  +FV  GG+R V LQFPD LL  +A AA WL    G E  ++V+GDTT+G+  VDEVAA H GA AV+H+GPA       LPVL+I G+ P +I
Sbjct:   32 EMGRAAAFVRDGGFRKVALQFPDALLPDAAAAAAWLEEATGTE--MYVLGDTTYGSCCVDEVAAEHAGAGAVLHYGPACLSPSRRLPVLHIFGRLPLDI 128          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A8J5JRK3_HOMAM (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5JRK3_HOMAM)

HSP 1 Score: 95.1 bits (235), Expect = 4.230e-20
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   82 EGLELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANIPSLSSSIHSTL 420
            E  E  R + +++ GGYR VGLQFPD LL  +A   + +  +LG    VF++GDTT+G+  VDEVAA HIGADAVIHFG         LPVLYI  +   NIP++ SS+ + +
Sbjct:   30 EMYETTRCVQWIQAGGYRKVGLQFPDELLGEAAGVCQTITLQLGFN--VFILGDTTYGSCCVDEVAAEHIGADAVIHFGRTCLSPSRRLPVLYIFTRIKVNIPAVVSSLDAAI 140          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A7K8UUG0_9STRI (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=10 Tax=Aves TaxID=8782 RepID=A0A7K8UUG0_9STRI)

HSP 1 Score: 93.2 bits (230), Expect = 1.780e-19
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   40 ELWPWLGAEEAGVVEGL-ELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANI 387
            EL P   A   G ++G  E+ R  +FV  GG+R V LQFPDGLL  +A  A  + +  G E  ++++GDTT+G+  VDEVAA H GA+AV+H+GPA       LPVL+I G+ P ++
Sbjct:   16 ELGPAAAAAPRGELDGFYEMGRAAAFVRGGGFRKVALQFPDGLLADAAAVAARMEAATGAE--MYILGDTTYGSCCVDEVAAEHAGAEAVLHYGPACLSPCRKLPVLHIFGQQPLDV 130          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A7L2VRX1_9AVES (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=1 Tax=Brachypteracias leptosomus TaxID=135165 RepID=A0A7L2VRX1_9AVES)

HSP 1 Score: 93.2 bits (230), Expect = 1.800e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   91 ELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAP 378
            E+DR  +FV  GG+R V LQFPD LL  +A  A  +G+  G E  ++V+GDTT+G+  VDEVAA H+ A+AV+H+GPA       LPVL+I GK P
Sbjct:   35 EMDRAAAFVRGGGFRKVALQFPDQLLADAAAVAARMGAATGAE--IYVLGDTTYGSCCVDEVAAEHVAAEAVLHYGPACLSPCRRLPVLHIFGKQP 128          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A852KL54_UROIN (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=1 Tax=Urocolius indicus TaxID=458196 RepID=A0A852KL54_UROIN)

HSP 1 Score: 92.4 bits (228), Expect = 3.060e-19
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   91 ELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANI 387
            E+ R  +FV  GG+R V LQFPD LL  +A  A  +    G    V+V+GDTT+G+  VDEVAA H+GA+AV+H+GPA       LPVLYI GK P ++
Sbjct:    9 EMSRAAAFVREGGFRKVALQFPDELLADAAAVAAGMEEASGAR--VYVLGDTTYGSCCVDEVAAEHVGAEAVLHYGPACLSPCEKLPVLYIFGKQPLDV 105          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: UPI000462197B (diphthamide biosynthesis protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI000462197B)

HSP 1 Score: 90.1 bits (222), Expect = 2.440e-18
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    7 AEMMRGDVEVEELWPW-LGAEEAGVVEGLELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANIPSLSSSIHSTL 420
            A+++   +E+EE  P  L AEE  + +  +++R +  +E+G +  + LQFPD LL  S    K L SRL  +R ++V+ DTT+G+  VDEVAA H+ ADA++H+G A       LPV+Y+ G+ P +    + S   TL
Sbjct:   12 ADVITRTIELEENIPSILSAEE--LEDTFDIERTVQEIEKGQFNRIALQFPDELLPHSVPIFKTLKSRLASDRELYVLADTTYGSCCVDEVAAQHVDADALVHYGHACMSQSSRLPVIYVLGRKPVDPSHCADSFSETL 148          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: UPI001BB1DA75 (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DA75)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-18
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   64 EEAGVVEGLELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANIPSLSSSIHSTL 420
            E   + E  ++DR + F+    Y+ VGLQFPD LL +S+  A  L S+     +VF++GDT++G+  VDEVAA H GADA+IH+GPA        PVLY+ G+   ++   S    S +
Sbjct:   26 ESQDIEEQYQVDRCVQFINNKNYKKVGLQFPDDLLHLSSRLAGILQSKTSA--IVFILGDTSYGSCCVDEVAAQHAGADAIIHYGPACLSPTKRFPVLYVFGQGKIDVGKCSERFRSLI 142          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A423SL61_PENVA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=3 Tax=Penaeus TaxID=133894 RepID=A0A423SL61_PENVA)

HSP 1 Score: 89.7 bits (221), Expect = 3.280e-18
Identity = 50/114 (43.86%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   82 EGLELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPT-LPVLYIQGKAPANIPSLSSSIHSTL 420
            E  E+ R + +++ GGY+ VGLQFPD L+  +   A+ L + LG +  V+++GDTT+G+  VDEVAA H+GAD+++HFG  S LSP   LPVLYI  +   N+P +  S+ + +
Sbjct:   30 EVYEVSRCVRWIQDGGYKKVGLQFPDELIVDAPAVARALSTALGFK--VYILGDTTYGSCCVDEVAAEHVGADSIVHFG-RSCLSPSRRLPVLYIFTRLSVNLPLVVESLQAAI 140          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: A0A091G0C5_9AVES (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=21 Tax=Neognathae TaxID=8825 RepID=A0A091G0C5_9AVES)

HSP 1 Score: 89.4 bits (220), Expect = 3.810e-18
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   91 ELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPTLPVLYIQGKAPANI 387
            E+DR  +FV  GG+R V LQFPD LL  +A  A  + +  G +  ++V+GDTT+G+  VDEVAA H GA+AV+H+GPA       LPVL+I G+ P +I
Sbjct:    5 EMDRAAAFVRGGGFRTVALQFPDELLADAAAVAAQMEAVTGAK--MYVLGDTTYGSCCVDEVAAEHAGAEAVLHYGPACLSPCRKLPVLHIFGQQPVDI 101          
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Match: UPI001C70FC22 (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70FC22)

HSP 1 Score: 89.4 bits (220), Expect = 4.540e-18
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   82 EGLELDRVLSFVERGGYRCVGLQFPDGLLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIHFGPASFLSPPT-LPVLYIQGKAPANIPSLSSSIHSTL 420
            E  E+ R + +++  GYR VGLQFPD L+  +   A+ + + LG    V+++GDTT+G+  VDEVAA H+GAD+++HFG  S LSP   LPVLYI  +   N+P +S S+ + +
Sbjct:   42 EVYEVSRCVKWIQDRGYRKVGLQFPDELIVDAPAVARAISTALGFS--VYILGDTTYGSCCVDEVAAEHVGADSILHFG-RSCLSPSRRLPVLYIFTRLTVNVPLVSESLQAAI 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73623.17447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A851NHB4_9GALL3.630e-2051.522-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A8J5JRK3_HOMAM4.230e-2047.792-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A7K8UUG0_9STRI1.780e-1945.302-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A7L2VRX1_9AVES1.800e-1951.042-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A852KL54_UROIN3.060e-1949.492-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
UPI000462197B2.440e-1838.13diphthamide biosynthesis protein n=1 Tax=Trametes ... [more]
UPI001BB1DA752.520e-1840.342-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A423SL61_PENVA3.280e-1843.862-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A091G0C5_9AVES3.810e-1848.482-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
UPI001C70FC224.540e-1843.862-(3-amino-3-carboxypropyl)histidine synthase subu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73623contigM-pyrifera_M_contig73623:528..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score101.7
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog7668.SPU_008385-tr
Preferred nameDPH2
KEGG koko:K17866
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016765,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090560,GO:1900247,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.2-(3-amino-3-carboxypropyl)histidine synthase activity
EggNOG OGs38FXZ@33154,3BG2P@33208,3CXQE@33213,COG1736@1,KOG2648@2759
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size420
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.4502976-UTR-M-pyrifera_M_contig73623:527..5391622816633.4502976-UTR-M-pyrifera_M_contig73623:527..539Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73623 528..539 +
1692278089.1628036-UTR-M-pyrifera_M_contig73623:527..5391692278089.1628036-UTR-M-pyrifera_M_contig73623:527..539Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73623 528..539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.4650836-CDS-M-pyrifera_M_contig73623:539..9471622816633.4650836-CDS-M-pyrifera_M_contig73623:539..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73623 540..947 +
1692278089.1831248-CDS-M-pyrifera_M_contig73623:539..9471692278089.1831248-CDS-M-pyrifera_M_contig73623:539..947Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73623 540..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73623.17447.1prot_M-pyrifera_M_contig73623.17447.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73623 540..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73623.17447.1

>prot_M-pyrifera_M_contig73623.17447.1 ID=prot_M-pyrifera_M_contig73623.17447.1|Name=mRNA_M-pyrifera_M_contig73623.17447.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MMRGDVEVEELWPWLGAEEAGVVEGLELDRVLSFVERGGYRCVGLQFPDG
LLRVSAVAAKWLGSRLGRERVVFVMGDTTFGADSVDEVAAAHIGADAVIH
FGPASFLSPPTLPVLYIQGKAPANIPSLSSSIHSTL
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mRNA from alignment at M-pyrifera_M_contig73623:528..947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73623.17447.1 ID=mRNA_M-pyrifera_M_contig73623.17447.1|Name=mRNA_M-pyrifera_M_contig73623.17447.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig73623:528..947+ (Macrocystis pyrifera P11B4 male)
GATACGGCGGAGATGATGCGTGGGGACGTGGAGGTGGAGGAGCTGTGGCC GTGGCTGGGGGCAGAGGAGGCTGGGGTGGTGGAGGGGTTGGAGTTGGATC GCGTTTTGTCGTTTGTGGAGCGAGGCGGGTACAGGTGTGTGGGTCTGCAG TTTCCAGACGGCCTGTTGCGGGTGAGCGCCGTGGCAGCGAAATGGTTGGG GTCGCGGTTGGGCCGTGAGAGGGTGGTGTTCGTGATGGGAGACACAACCT TTGGTGCTGACAGTGTGGATGAAGTAGCAGCAGCTCACATTGGTGCTGAT GCCGTAATTCACTTTGGACCTGCTAGTTTCTTATCCCCGCCAACACTCCC TGTGCTCTACATCCAAGGAAAAGCGCCTGCAAATATCCCCTCTCTCTCCT CTTCCATCCACTCCACCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73623:528..947+

>mRNA_M-pyrifera_M_contig73623.17447.1 ID=mRNA_M-pyrifera_M_contig73623.17447.1|Name=mRNA_M-pyrifera_M_contig73623.17447.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig73623:528..947+ (Macrocystis pyrifera P11B4 male)
ATGATGCGTGGGGACGTGGAGGTGGAGGAGCTGTGGCCGTGGCTGGGGGC
AGAGGAGGCTGGGGTGGTGGAGGGGTTGGAGTTGGATCGCGTTTTGTCGT
TTGTGGAGCGAGGCGGGTACAGGTGTGTGGGTCTGCAGTTTCCAGACGGC
CTGTTGCGGGTGAGCGCCGTGGCAGCGAAATGGTTGGGGTCGCGGTTGGG
CCGTGAGAGGGTGGTGTTCGTGATGGGAGACACAACCTTTGGTGCTGACA
GTGTGGATGAAGTAGCAGCAGCTCACATTGGTGCTGATGCCGTAATTCAC
TTTGGACCTGCTAGTTTCTTATCCCCGCCAACACTCCCTGTGCTCTACAT
CCAAGGAAAAGCGCCTGCAAATATCCCCTCTCTCTCCTCTTCCATCCACT
CCACCCTCATGATGCGTGGGGACGTGGAGGTGGAGGAGCTGTGGCCGTGG
CTGGGGGCAGAGGAGGCTGGGGTGGTGGAGGGGTTGGAGTTGGATCGCGT
TTTGTCGTTTGTGGAGCGAGGCGGGTACAGGTGTGTGGGTCTGCAGTTTC
CAGACGGCCTGTTGCGGGTGAGCGCCGTGGCAGCGAAATGGTTGGGGTCG
CGGTTGGGCCGTGAGAGGGTGGTGTTCGTGATGGGAGACACAACCTTTGG
TGCTGACAGTGTGGATGAAGTAGCAGCAGCTCACATTGGTGCTGATGCCG
TAATTCACTTTGGACCTGCTAGTTTCTTATCCCCGCCAACACTCCCTGTG
CTCTACATCCAAGGAAAAGCGCCTGCAAATATCCCCTCTCTCTCCTCTTC
CATCCACTCCACCCTC
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