mRNA_M-pyrifera_M_contig73619.17445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73619.17445.1
Unique NamemRNA_M-pyrifera_M_contig73619.17445.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A1Y2CQM6_9FUNG (EF-hand n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CQM6_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.350e-8
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 EFVKFWKKNSH-KFLGMSGPGAENLRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKW 261
            EF+K+W+++   + L +S    + L + M +F+KYD +  G I    +  L  DL +     ++L+ ++  LDQ+ DGK+SFNEF  W
Sbjct:   59 EFIKWWRRDDRFQILQVSKEEMDRLSAYMALFKKYDSDQSGCIDVREFKNLFIDLTKRKLLNKSLMSAMRDLDQNHDGKVSFNEFVVW 146          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A0D2WPK7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WPK7_CAPO3)

HSP 1 Score: 55.1 bits (131), Expect = 3.370e-7
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   88 MFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQ 267
            MF K+D +  G++       LC+DLG   S  E  L +L  LD++GDGKIS+NEF +W Q
Sbjct:   14 MFDKFDTDKSGFLDSAELKSLCYDLGHPLSPVELDL-ALKMLDENGDGKISYNEFAQWWQ 72          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A8B6XSB5_HYDVU (uncharacterized calcium-binding protein B0563.7-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XSB5_HYDVU)

HSP 1 Score: 54.7 bits (130), Expect = 4.580e-7
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 EFVKFWKKNSHKFLGMSG-PGAENLRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQW 270
            EFV  W ++   F  +S  P  + L+ A+ MF+K+D +N   + ++ + +L      ++ +   L  +L+ LD+DG+ +ISF EF +WL W
Sbjct:   74 EFVS-WLRSGEHFKNISNKPRYQRLKKAVEMFKKFDVDNNQSLDRDEFKRL---FTSLNGDPPKLDAALAELDRDGNNRISFEEFLRWLNW 160          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A507E1S4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1S4_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 7.140e-7
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1
Query:    1 EFVKFWKK-NSHKFLGMSGPGAENLRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWL 264
            EF+K+W++ N  K L  S      L    H F+++D ++ G I    +  L  DL +    ++ L   L  LD + DGKISFNE+  W+
Sbjct:   86 EFIKWWQQENRFKSLQHSPSDLATLTEISHEFQRFDKDHSGCIDVREFRMLYADLVKRKMTKKTLAGMLEELDNNRDGKISFNEYVSWV 174          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A816ENR1_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816ENR1_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 1.280e-6
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   88 MFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQ 267
            +F KYD +  GYI  E    LC+D+G   S+ + L  + +F+D DG+G+IS+ EF+ W Q
Sbjct:   36 LFNKYDTDKNGYISLEELRYLCYDMGYFLSDVQ-LNWARTFIDNDGNGEISYKEFSSWWQ 94          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A814TPX1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814TPX1_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 2.100e-6
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   88 MFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKW 261
            +F+KYD +  G I  E    LC+D+G   S+++ L+ + +FLD+DGDG+IS+ EF  W
Sbjct:   27 IFKKYDLDENGSIELEELRNLCYDMGCYLSDKD-LIWARTFLDKDGDGRISYPEFAAW 83          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A3M6TJA4_POCDA (Uncharacterized protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TJA4_POCDA)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-6
Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    1 EFVKFWKKNSHKFLGMSGPGA-ENLRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQW 270
            EF++ W ++  +F  ++     +NL  A+ +F+ YD +N   + K+ + +L   LG    + E       +LD+  +GKISF EF KWL W
Sbjct:   71 EFLQ-WLRSGERFEAVNNKARFKNLCKAVELFKTYDKDNNNNLSKDEFKELLDSLGYKGVDVERFFE---YLDEHKNGKISFWEFMKWLNW 157          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A7M5XH23_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XH23_9CNID)

HSP 1 Score: 52.0 bits (123), Expect = 5.440e-6
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 EFVKFWKKNSHKFLGMSGPGAEN-LRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSF--LDQDGDGKISFNEFTKWLQW 270
            EFV  W K+  KF  +S     + L+ A+ MF++YD +  G I  + +  L +D+         +L   S   +D D DG++SF EF +WL W
Sbjct:   73 EFV-IWMKSGDKFKAVSDKARYHYLKKAVDMFKQYDLDRDGSIDSKEFDLLYYDIVPNKEKHTNVLRRKSMFEVDLDHDGRVSFQEFMRWLHW 164          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: UPI000A2A58E7 (caltractin n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A58E7)

HSP 1 Score: 48.9 bits (115), Expect = 6.570e-5
Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 1
Query:   73 RSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQW 270
            R A+ MF+KY              +L  D+    S E AL      LD+DG+GKISF EF KWL W
Sbjct:   95 RKAVDMFKKYXXXXXXXXXXXXLKQLLKDVNYKQSLESAL----KVLDKDGNGKISFPEFLKWLNW 156          
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Match: A0A0L0HAC7_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAC7_SPIPD)

HSP 1 Score: 49.3 bits (116), Expect = 6.870e-5
Identity = 28/90 (31.11%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    1 EFVKFWKKNSHKF--LGMSGPGAENLRSAMHMFRKYDPENLGYILKENYAKLCHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWL 264
            EF+K+W++  H+F  L +S     +L      F+++D +  G I    +  L  DL +    ++ L  +L  LD + DGK+SFNE+  W+
Sbjct:   80 EFIKWWQQE-HRFKTLQLSPQELADLTQISTDFQRFDKDQSGCIDVREFRLLYADLVRRGMTKKTLAGTLEELDNNRDGKVSFNEYVDWV 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73619.17445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1Y2CQM6_9FUNG1.350e-834.09EF-hand n=1 Tax=Rhizoclosmatium globosum TaxID=329... [more]
A0A0D2WPK7_CAPO33.370e-745.00Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A8B6XSB5_HYDVU4.580e-731.87uncharacterized calcium-binding protein B0563.7-li... [more]
A0A507E1S4_9FUNG7.140e-733.71Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A816ENR1_9BILA1.280e-641.67Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
A0A814TPX1_9BILA2.100e-643.10Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A3M6TJA4_POCDA2.290e-631.87Uncharacterized protein n=2 Tax=Pocilloporidae Tax... [more]
A0A7M5XH23_9CNID5.440e-633.33Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
UPI000A2A58E76.570e-540.91caltractin n=1 Tax=Exaiptasia diaphana TaxID=26527... [more]
A0A0L0HAC7_SPIPD6.870e-531.11Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73619contigM-pyrifera_M_contig73619:3..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.3725822-CDS-M-pyrifera_M_contig73619:2..2931622816633.3725822-CDS-M-pyrifera_M_contig73619:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73619 3..293 +
1692278089.1379497-CDS-M-pyrifera_M_contig73619:2..2931692278089.1379497-CDS-M-pyrifera_M_contig73619:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73619 3..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73619.17445.1prot_M-pyrifera_M_contig73619.17445.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73619 3..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73619.17445.1

>prot_M-pyrifera_M_contig73619.17445.1 ID=prot_M-pyrifera_M_contig73619.17445.1|Name=mRNA_M-pyrifera_M_contig73619.17445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
EFVKFWKKNSHKFLGMSGPGAENLRSAMHMFRKYDPENLGYILKENYAKL
CHDLGQVHSNEEALLHSLSFLDQDGDGKISFNEFTKWLQWPIWKGE*
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mRNA from alignment at M-pyrifera_M_contig73619:3..293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73619.17445.1 ID=mRNA_M-pyrifera_M_contig73619.17445.1|Name=mRNA_M-pyrifera_M_contig73619.17445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig73619:3..293+ (Macrocystis pyrifera P11B4 male)
GAGTTTGTCAAGTTCTGGAAGAAGAACTCGCACAAGTTCCTGGGCATGAG CGGCCCCGGCGCCGAGAACCTTCGTTCCGCCATGCACATGTTCAGGAAGT ACGACCCCGAGAACTTGGGCTACATCCTCAAGGAGAACTACGCCAAGCTT TGCCATGACCTTGGTCAGGTCCACTCAAACGAGGAAGCGCTCCTCCACTC ACTCTCCTTTCTGGATCAAGACGGCGACGGCAAGATTTCCTTCAACGAAT TCACCAAGTGGCTCCAGTGGCCCATCTGGAAGGGAGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73619:3..293+

>mRNA_M-pyrifera_M_contig73619.17445.1 ID=mRNA_M-pyrifera_M_contig73619.17445.1|Name=mRNA_M-pyrifera_M_contig73619.17445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig73619:3..293+ (Macrocystis pyrifera P11B4 male)
GAGTTTGTCAAGTTCTGGAAGAAGAACTCGCACAAGTTCCTGGGCATGAG
CGGCCCCGGCGCCGAGAACCTTCGTTCCGCCATGCACATGTTCAGGAAGT
ACGACCCCGAGAACTTGGGCTACATCCTCAAGGAGAACTACGCCAAGCTT
TGCCATGACCTTGGTCAGGTCCACTCAAACGAGGAAGCGCTCCTCCACTC
ACTCTCCTTTCTGGATCAAGACGGCGACGGCAAGATTTCCTTCAACGAAT
TCACCAAGTGGCTCCAGTGGCCCATCTGGAAGGGAGAGTAGGAGTTTGTC
AAGTTCTGGAAGAAGAACTCGCACAAGTTCCTGGGCATGAGCGGCCCCGG
CGCCGAGAACCTTCGTTCCGCCATGCACATGTTCAGGAAGTACGACCCCG
AGAACTTGGGCTACATCCTCAAGGAGAACTACGCCAAGCTTTGCCATGAC
CTTGGTCAGGTCCACTCAAACGAGGAAGCGCTCCTCCACTCACTCTCCTT
TCTGGATCAAGACGGCGACGGCAAGATTTCCTTCAACGAATTCACCAAGT
GGCTCCAGTGGCCCATCTGGAAGGGAGAGTAG
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