mRNA_M-pyrifera_M_contig73603.17442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73603.17442.1
Unique NamemRNA_M-pyrifera_M_contig73603.17442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73603.17442.1 vs. uniprot
Match: D7FTS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 9.170e-11
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:    6 VTLTPAQIAANEGDIKAACEKVGMDPTELLAGLPKTYTAATPTLFS 143
            V LTP QIA NE DI++ CEKVG DP  LLA +PKTYTA TPTLFS
Sbjct:  296 VALTPEQIATNEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73603.17442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTS0_ECTSI9.170e-1171.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73603contigM-pyrifera_M_contig73603:213..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.2182527-UTR-M-pyrifera_M_contig73603:212..3781622816633.2182527-UTR-M-pyrifera_M_contig73603:212..378Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73603 213..378 +
1692278089.0694757-UTR-M-pyrifera_M_contig73603:212..3781692278089.0694757-UTR-M-pyrifera_M_contig73603:212..378Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73603 213..378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.2317376-CDS-M-pyrifera_M_contig73603:378..9511622816633.2317376-CDS-M-pyrifera_M_contig73603:378..951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73603 379..951 +
1692278089.0786119-CDS-M-pyrifera_M_contig73603:378..9511692278089.0786119-CDS-M-pyrifera_M_contig73603:378..951Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73603 379..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73603.17442.1prot_M-pyrifera_M_contig73603.17442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73603 379..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73603.17442.1

>prot_M-pyrifera_M_contig73603.17442.1 ID=prot_M-pyrifera_M_contig73603.17442.1|Name=mRNA_M-pyrifera_M_contig73603.17442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MQAATRTLLVQLERDTRREVKEKGTGGMEWDEWSSSFCSIGEVLNFVVPA
SPCWSFGKSLWSFRQVFLVVRKTFWSFGEVLFLVSWPKVGGRDFPPWVDA
WMLAPSTRANDALRRRNSKSGSGRGATLVSLGRRRFFGVAGTTAVSTIFA
RGHLLAVLGIRWCLLFRRAAGLVWWCKGRNLDVANAFWESP
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mRNA from alignment at M-pyrifera_M_contig73603:213..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73603.17442.1 ID=mRNA_M-pyrifera_M_contig73603.17442.1|Name=mRNA_M-pyrifera_M_contig73603.17442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=739bp|location=Sequence derived from alignment at M-pyrifera_M_contig73603:213..951+ (Macrocystis pyrifera P11B4 male)
AGACTGTGACTTTGACGCCGGCGCAGATCGCGGCAAACGAGGGTGACATC
AAGGCTGCCTGCGAGAAGGTGGGAATGGACCCCACTGAGCTCCTCGCCGG
CCTGCCTAAGACCTACACGGCGGCCACCCCCACTCTGTTCAGCTAGAGAG
GGGACACGCGCCGGTGATGCAGGCCGCCACCCGCACTCTGTTGGTTCAGC
TAGAGAGGGACACACGGAGGGAAGTAAAAGAAAAAGGGACCGGTGGGATG
GAATGGGATGAGTGGTCGTCTTCTTTTTGTTCGATCGGTGAAGTCCTTAA
CTTTGTCGTTCCGGCAAGTCCTTGTTGGTCGTTTGGCAAGTCCTTGTGGT
CGTTCCGGCAAGTCTTTTTGGTCGTTCGGAAAACCTTTTGGTCGTTCGGA
GAAGTCCTCTTTCTTGTCTCGTGGCCAAAAGTCGGCGGTAGGGATTTTCC
ACCTTGGGTGGATGCTTGGATGCTTGCTCCTTCAACACGAGCGAACGATG
CTCTCCGTCGGCGTAATTCAAAAAGCGGCAGCGGGAGGGGGGCAACGTTA
GTCTCTTTGGGGCGGAGGCGTTTTTTTGGTGTTGCTGGTACGACTGCTGT
CTCGACGATCTTTGCGCGCGGACACTTACTTGCAGTGTTAGGGATTCGCT
GGTGTCTTTTATTTCGTCGGGCTGCGGGGCTGGTGTGGTGGTGTAAGGGG
CGTAACCTCGATGTCGCGAACGCTTTTTGGGAGTCACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73603:213..951+

>mRNA_M-pyrifera_M_contig73603.17442.1 ID=mRNA_M-pyrifera_M_contig73603.17442.1|Name=mRNA_M-pyrifera_M_contig73603.17442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig73603:213..951+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCCGCCACCCGCACTCTGTTGGTTCAGCTAGAGAGGGACACACG
GAGGGAAGTAAAAGAAAAAGGGACCGGTGGGATGGAATGGGATGAGTGGT
CGTCTTCTTTTTGTTCGATCGGTGAAGTCCTTAACTTTGTCGTTCCGGCA
AGTCCTTGTTGGTCGTTTGGCAAGTCCTTGTGGTCGTTCCGGCAAGTCTT
TTTGGTCGTTCGGAAAACCTTTTGGTCGTTCGGAGAAGTCCTCTTTCTTG
TCTCGTGGCCAAAAGTCGGCGGTAGGGATTTTCCACCTTGGGTGGATGCT
TGGATGCTTGCTCCTTCAACACGAGCGAACGATGCTCTCCGTCGGCGTAA
TTCAAAAAGCGGCAGCGGGAGGGGGGCAACGTTAGTCTCTTTGGGGCGGA
GGCGTTTTTTTGGTGTTGCTGGTACGACTGCTGTCTCGACGATCTTTGCG
CGCGGACACTTACTTGCAGTGTTAGGGATTCGCTGGTGTCTTTTATTTCG
TCGGGCTGCGGGGCTGGTGTGGTGGTGTAAGGGGCGTAACCTCGATGTCG
CGAACGCTTTTTGGGAGTCACCAATGCAGGCCGCCACCCGCACTCTGTTG
GTTCAGCTAGAGAGGGACACACGGAGGGAAGTAAAAGAAAAAGGGACCGG
TGGGATGGAATGGGATGAGTGGTCGTCTTCTTTTTGTTCGATCGGTGAAG
TCCTTAACTTTGTCGTTCCGGCAAGTCCTTGTTGGTCGTTTGGCAAGTCC
TTGTGGTCGTTCCGGCAAGTCTTTTTGGTCGTTCGGAAAACCTTTTGGTC
GTTCGGAGAAGTCCTCTTTCTTGTCTCGTGGCCAAAAGTCGGCGGTAGGG
ATTTTCCACCTTGGGTGGATGCTTGGATGCTTGCTCCTTCAACACGAGCG
AACGATGCTCTCCGTCGGCGTAATTCAAAAAGCGGCAGCGGGAGGGGGGC
AACGTTAGTCTCTTTGGGGCGGAGGCGTTTTTTTGGTGTTGCTGGTACGA
CTGCTGTCTCGACGATCTTTGCGCGCGGACACTTACTTGCAGTGTTAGGG
ATTCGCTGGTGTCTTTTATTTCGTCGGGCTGCGGGGCTGGTGTGGTGGTG
TAAGGGGCGTAACCTCGATGTCGCGAACGCTTTTTGGGAGTCACCA
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