mRNA_M-pyrifera_M_contig73597.17441.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73597.17441.1
Unique NamemRNA_M-pyrifera_M_contig73597.17441.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A423XE78_9PEZI (PCI domain-containing protein n=1 Tax=Cytospora leucostoma TaxID=1230097 RepID=A0A423XE78_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 2.370e-11
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 1
Query:   25 WPKVLPAEECVMLGSVCCAATQFRQELQGVLSRDALEESFASIPAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAEGSVRRQTEDERAK 486
            + + +   +  + G +   AT  R EL GVL   +        P  R  + + V+  YS  L   EA R  +L       HV  + S +  +CI  +  P+S V L S+  A A P   I + +  +IRSG L+ARIDA +  V   + + RAK
Sbjct:  248 YDEFISPNDIAIHGGLLALATMSRTELSGVLDNSSFRTYLELEPHIRRAISQFVNGKYSACLAILEAYRSDYLLDIYLQAHVKHLYSIIRAKCIYHFLQPFSCVTLDSLNAAFAPPGGSIDAELVKMIRSGGLEARIDAIDRVVTIPSANPRAK 401          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A423VUM3_9PEZI (PCI domain-containing protein n=4 Tax=Valsa TaxID=83174 RepID=A0A423VUM3_9PEZI)

HSP 1 Score: 68.9 bits (167), Expect = 2.750e-10
Identity = 44/154 (28.57%), Postives = 70/154 (45.45%), Query Frame = 1
Query:   25 WPKVLPAEECVMLGSVCCAATQFRQELQGVLSRDALEESFASIPAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAEGSVRRQTEDERAK 486
            + + +   +  + G +   AT  R EL GVL   +        P  R  + + V+  YS  L   E  R  +L       HV  + + +  +CI  +  P+S V + S+  A A P   I + +  +IRSG L+ARIDA +  V   + + RAK
Sbjct:  246 YDEYISPNDIAVHGGLLALATMSRSELSGVLDNSSFRTYLELEPHIRRAISQFVNGKYSACLAILETYRSDYLLDLYLQPHVKHLYNEIRGKCIYHFLQPFSCVTIDSLDAAFAPPGGSIDAELVEMIRSGRLEARIDAIDRVVTIASPNPRAK 399          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A8K0TD47_9PEZI (COP9 signalosome complex subunit 1 n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TD47_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 9.290e-10
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   16 GGGWPKVLPAEECVMLGSVCCAATQFRQELQGVLSRDALEESFASI-PAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAE 447
            GG +  +    +  + G +   AT  R++LQ  +  +A   +F  + P  R+ +   V+  YS  L   E+ R  +L       HV  I S +  +CI +Y  P+S V L+++  A  +P + + S +  +I+SGALQAR++  +
Sbjct:  244 GGDYNNIATPNDVAVYGGLLALATLDRRQLQTRVLDNAQFRTFLELEPHIRKAISLFVNGRYSACLAILESYRADYLLDIYLQRHVPTIYSRIRSKCIVQYFEPFSCVTLANLEAAFGIPGQSLQSELVSMIKSGALQARVNTMD 388          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A7S1CEC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEC5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.080e-9
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  154 PAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAEGSVRRQTEDERAKAVGMIRDMASTFTQVANAALLRTSCERH 570
            P  R+L++      Y+  L A E LRP+ L      +HV  +   +    I +Y SPYS+V + ++AEAL    E + + +  LI    L ARID+ +  ++ +  +ER        ++ + FT+   A +LR++ ER+
Sbjct:  337 PKVRDLLQDFGASRYAACLGALEELRPSLLLDVHLREHVVALYQQIRTAAILQYFSPYSKVSMVTMAEALRCSVEDLEAELAQLIMDDKLTARIDSQKKLLQTRQSNERVATYTRALEVGAAFTRDIKAMVLRSNLERN 475          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A1Y2W7I8_9PEZI (PCI domain-containing protein n=1 Tax=Hypoxylon sp. CI-4A TaxID=1001833 RepID=A0A1Y2W7I8_9PEZI)

HSP 1 Score: 62.8 bits (151), Expect = 3.570e-8
Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 1
Query:   25 WPKVLPAEECVMLGSVCCAATQFRQELQG-VLSRDALEESFASIPAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAE 447
            +  ++ A +    G +   A+  R ELQ  VL   +        P  R+ V   V+  YS  L   E+ R  +L       HV+ I S +  +CI +Y  P+S V L S+  A A P E I   +  +I+SGAL ARI+  +
Sbjct:  245 YKDLVSANDIATYGGLLALASMDRVELQSRVLDNTSFRGCLELEPHIRKAVSMFVNGRYSACLGILESYRTDYLLDIYLQKHVAAIFSQIRSKCIVQYFLPFSCVTLESLNAAFARPGETIEPELVSMIKSGALNARINTID 386          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A507B6P0_9PEZI (PCI domain-containing protein n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507B6P0_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 1.200e-7
Identity = 40/134 (29.85%), Postives = 64/134 (47.76%), Query Frame = 1
Query:   49 ECVMLGSVCCAATQFRQELQ-GVLSRDALEESFASIPAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAE 447
            +  + G +   AT  R+EL+  VL +          P  R  + + V   YS  L   E+ R  +L       H+  + S +  +CI +Y  P+S V L ++ +A A P + I   +  +I+SGALQARID  +
Sbjct:  254 DVAVYGGLLALATMNRKELKIRVLEKSNFRAFLELEPHIRRAITQFVSGRYSACLEILESYRADYLLDIHLQKHIPTLYSQIRSKCIVQYLVPFSCVTLETMNKAFAPPGQSIEQELVAMIKSGALQARIDTID 387          
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Match: A0A1Y2X7M3_9PEZI (PCI domain-containing protein n=4 Tax=Daldinia TaxID=42360 RepID=A0A1Y2X7M3_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 3.390e-6
Identity = 41/129 (31.78%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   64 GSVCCAATQFRQELQGVLSRDALEESFASI-PAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERRCIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAE 447
            G +   A+  R ELQ  +   A   ++  + P  R+ V   V+  YS  L   E+ R  +L       HV  I S +  +CI +Y  P+S V L S+  A A P E I   + ++I++GAL ARI+  +
Sbjct:  258 GGLLALASMDRLELQTRVLDSASFRNYLELEPHIRKAVSLFVNGRYSACLGILESYRNDYLLDIYLQAHVPAIFSQIRSKCIVQYFVPFSCVTLDSLNAAFAKPGESIEPELINMIKTGALNARINTID 386          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73597.17441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A423XE78_9PEZI2.370e-1130.52PCI domain-containing protein n=1 Tax=Cytospora le... [more]
A0A423VUM3_9PEZI2.750e-1028.57PCI domain-containing protein n=4 Tax=Valsa TaxID=... [more]
A0A8K0TD47_9PEZI9.290e-1028.28COP9 signalosome complex subunit 1 n=1 Tax=Plectos... [more]
A0A7S1CEC5_9STRA8.080e-929.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1Y2W7I8_9PEZI3.570e-830.99PCI domain-containing protein n=1 Tax=Hypoxylon sp... [more]
A0A507B6P0_9PEZI1.200e-729.85PCI domain-containing protein n=1 Tax=Thyridium cu... [more]
A0A1Y2X7M3_9PEZI3.390e-631.78PCI domain-containing protein n=4 Tax=Daldinia Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73597contigM-pyrifera_M_contig73597:41..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.8
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog3067.XP_002953121.1
KEGG koko:K12175
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009646,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070646,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.26S proteasome subunit RPN7
EggNOG OGs34J35@3041,37JPY@33090,KOG0686@1,KOG0686@2759
COG Functional cat.OT
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.1829407-CDS-M-pyrifera_M_contig73597:40..6191622816633.1829407-CDS-M-pyrifera_M_contig73597:40..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73597 41..619 +
1692278089.0590475-CDS-M-pyrifera_M_contig73597:40..6191692278089.0590475-CDS-M-pyrifera_M_contig73597:40..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73597 41..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73597.17441.1prot_M-pyrifera_M_contig73597.17441.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73597 41..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73597.17441.1

>prot_M-pyrifera_M_contig73597.17441.1 ID=prot_M-pyrifera_M_contig73597.17441.1|Name=mRNA_M-pyrifera_M_contig73597.17441.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
LGAASGGGWPKVLPAEECVMLGSVCCAATQFRQELQGVLSRDALEESFAS
IPAARELVEKLVDMDYSGALVAWEALRPTFLACHATYDHVSMISSALERR
CIREYTSPYSRVLLSSIAEALALPEERILSHVTHLIRSGALQARIDAAEG
SVRRQTEDERAKAVGMIRDMASTFTQVANAALLRTSCERHQFV
back to top

mRNA from alignment at M-pyrifera_M_contig73597:41..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73597.17441.1 ID=mRNA_M-pyrifera_M_contig73597.17441.1|Name=mRNA_M-pyrifera_M_contig73597.17441.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig73597:41..619+ (Macrocystis pyrifera P11B4 male)
TTGGGTGCAGCTTCTGGTGGAGGTTGGCCCAAGGTATTGCCTGCTGAAGA GTGCGTCATGCTGGGAAGTGTGTGCTGTGCAGCAACTCAGTTTAGGCAAG AGTTGCAAGGTGTACTGTCTCGGGATGCGCTGGAGGAAAGTTTTGCATCA ATCCCTGCAGCCCGAGAGTTGGTGGAAAAGCTGGTGGATATGGACTACAG TGGAGCCTTAGTTGCATGGGAAGCACTGCGACCCACTTTTCTCGCTTGTC ACGCCACCTATGACCACGTGTCTATGATTTCTTCTGCACTCGAGCGGCGT TGCATCAGAGAGTACACTTCTCCGTATTCTCGAGTTTTGCTTTCGTCTAT TGCAGAAGCCCTTGCGTTGCCAGAGGAGAGAATTCTGAGCCATGTCACGC ATCTCATTCGCAGTGGTGCGTTGCAGGCACGCATTGATGCTGCAGAGGGC TCTGTGAGGCGACAAACAGAAGATGAACGTGCCAAAGCGGTTGGAATGAT TCGAGATATGGCAAGCACGTTTACCCAAGTCGCAAATGCTGCGTTGTTGC GCACATCTTGCGAAAGACACCAATTTGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig73597:41..619+

>mRNA_M-pyrifera_M_contig73597.17441.1 ID=mRNA_M-pyrifera_M_contig73597.17441.1|Name=mRNA_M-pyrifera_M_contig73597.17441.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig73597:41..619+ (Macrocystis pyrifera P11B4 male)
TTGGGTGCAGCTTCTGGTGGAGGTTGGCCCAAGGTATTGCCTGCTGAAGA
GTGCGTCATGCTGGGAAGTGTGTGCTGTGCAGCAACTCAGTTTAGGCAAG
AGTTGCAAGGTGTACTGTCTCGGGATGCGCTGGAGGAAAGTTTTGCATCA
ATCCCTGCAGCCCGAGAGTTGGTGGAAAAGCTGGTGGATATGGACTACAG
TGGAGCCTTAGTTGCATGGGAAGCACTGCGACCCACTTTTCTCGCTTGTC
ACGCCACCTATGACCACGTGTCTATGATTTCTTCTGCACTCGAGCGGCGT
TGCATCAGAGAGTACACTTCTCCGTATTCTCGAGTTTTGCTTTCGTCTAT
TGCAGAAGCCCTTGCGTTGCCAGAGGAGAGAATTCTGAGCCATGTCACGC
ATCTCATTCGCAGTGGTGCGTTGCAGGCACGCATTGATGCTGCAGAGGGC
TCTGTGAGGCGACAAACAGAAGATGAACGTGCCAAAGCGGTTGGAATGAT
TCGAGATATGGCAAGCACGTTTACCCAAGTCGCAAATGCTGCGTTGTTGC
GCACATCTTGCGAAAGACACCAATTTGTCTTGGGTGCAGCTTCTGGTGGA
GGTTGGCCCAAGGTATTGCCTGCTGAAGAGTGCGTCATGCTGGGAAGTGT
GTGCTGTGCAGCAACTCAGTTTAGGCAAGAGTTGCAAGGTGTACTGTCTC
GGGATGCGCTGGAGGAAAGTTTTGCATCAATCCCTGCAGCCCGAGAGTTG
GTGGAAAAGCTGGTGGATATGGACTACAGTGGAGCCTTAGTTGCATGGGA
AGCACTGCGACCCACTTTTCTCGCTTGTCACGCCACCTATGACCACGTGT
CTATGATTTCTTCTGCACTCGAGCGGCGTTGCATCAGAGAGTACACTTCT
CCGTATTCTCGAGTTTTGCTTTCGTCTATTGCAGAAGCCCTTGCGTTGCC
AGAGGAGAGAATTCTGAGCCATGTCACGCATCTCATTCGCAGTGGTGCGT
TGCAGGCACGCATTGATGCTGCAGAGGGCTCTGTGAGGCGACAAACAGAA
GATGAACGTGCCAAAGCGGTTGGAATGATTCGAGATATGGCAAGCACGTT
TACCCAAGTCGCAAATGCTGCGTTGTTGCGCACATCTTGCGAAAGACACC
AATTTGTC
back to top