mRNA_M-pyrifera_M_contig73595.17440.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73595.17440.1
Unique NamemRNA_M-pyrifera_M_contig73595.17440.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A3D2U0G6_9PLAN (Transpeptidase domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D2U0G6_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.850e-18
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTA+ GG+ EDHAWF GY P  RP+VAF V LEHAGSG   AGPVAR ++E L   G   P
Sbjct:   42 TGTAEVGGDLEDHAWFAGYVPARRPRVAFVVVLEHAGSGGRKAGPVARALVESLQVTGLIAP 103          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A257WJ55_9BACT (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257WJ55_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 7.590e-18
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTA+ GG R DHAWF G+ P + P+VAFAV +EH GSGS  AGPVAR  +  L  LG   P
Sbjct:   34 TGTAEVGGGRPDHAWFAGFTPADNPRVAFAVVIEHGGSGSRTAGPVAREFVRSLLELGLITP 95          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A3B8L7T1_9PLAN (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8L7T1_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 3.830e-17
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTA+ GG+ EDHAWF GY P  RP+VAF V LEHAGSG   AGPVAR ++E L   G   P
Sbjct:  162 TGTAEVGGDLEDHAWFAGYVPARRPRVAFVVVLEHAGSGGRKAGPVARALVESLQVTGLIAP 223          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A7C4MXH2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MXH2_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 7.270e-17
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFD 183
            TGTA++   R  HAWFVGY P +RP+ AF++A+EH GSG+  AGPVA+R++  LHRLG  D
Sbjct:  138 TGTAESTPGRPPHAWFVGYVPADRPRFAFSIAIEHGGSGAQTAGPVAKRLVMALHRLGMLD 198          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A356A1Y6_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A1Y6_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.280e-16
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTAQ GGNR+ HAWFVGY P ++P+ AF + LEH GSG   AGP+A+++++ L  LG+ +P
Sbjct:  691 TGTAQTGGNRDSHAWFVGYVPADQPQYAFVIMLEHGGSGGADAGPLAKKLVQSLLELGFVEP 752          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A353Z8Q4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353Z8Q4_9PLAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.750e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRL 171
            TGTA+ GG R DHAWF GYAP  RP+VAF V LEHAG+G  AAGPVAR+ ++ + RL
Sbjct:  677 TGTAEPGGGRPDHAWFAGYAPANRPRVAFVVVLEHAGTGGHAAGPVARKFVQAMERL 733          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A2E7NWE6_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NWE6_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-16
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTA+ GG+ EDHAWF GY P  RP+VAF V LEHAGSG   AGPVAR ++E L   G   P
Sbjct:  636 TGTAEVGGDLEDHAWFAGYVPARRPRVAFVVVLEHAGSGGRKAGPVARALVESLQVTGLIAP 697          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A3B8PKM8_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8PKM8_9PLAN)

HSP 1 Score: 79.7 bits (195), Expect = 6.070e-16
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFDP 186
            TGTA+ GG+ EDHAWF GY P +RP++AF V LEHAGSG   AGPVAR++++ +   G   P
Sbjct:  633 TGTAEVGGDLEDHAWFAGYVPADRPRLAFVVVLEHAGSGGRQAGPVARQLVQSMRAHGLIGP 694          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A517Z2T6_9PLAN (Penicillin-binding protein PbpB n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z2T6_9PLAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.550e-15
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLGYFD 183
            TGTA+AGG   DHAWF GY P +RP+VAF V LEH GSGS AAGP+AR +++ L   G+  
Sbjct:  679 TGTAEAGGGLPDHAWFAGYVPADRPRVAFVVVLEHGGSGSRAAGPLARELVQALLDRGFIQ 739          
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Match: A0A7C2JZC4_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JZC4_9PLAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.120e-15
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRVIEQLHRLG 174
            TGTA+AGG R DHAWF GYAP + P+VAFAV LEH GSG   AGP+AR  +  L   G
Sbjct:  674 TGTAEAGGGRPDHAWFAGYAPADHPRVAFAVVLEHGGSGGKTAGPIAREFVRTLVETG 731          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73595.17440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2U0G6_9PLAN2.850e-1861.29Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A257WJ55_9BACT7.590e-1858.06Transpeptidase domain-containing protein (Fragment... [more]
A0A3B8L7T1_9PLAN3.830e-1761.29Transpeptidase domain-containing protein (Fragment... [more]
A0A7C4MXH2_9BACT7.270e-1757.38Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A356A1Y6_9PLAN1.280e-1654.84Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A353Z8Q4_9PLAN1.750e-1664.91Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E7NWE6_9PLAN2.380e-1661.29Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A3B8PKM8_9PLAN6.070e-1656.45Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517Z2T6_9PLAN1.550e-1559.02Penicillin-binding protein PbpB n=1 Tax=Maioricimo... [more]
A0A7C2JZC4_9PLAN2.120e-1562.07Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73595contigM-pyrifera_M_contig73595:1..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.3
Seed ortholog evalue5.8e-12
Seed eggNOG ortholog697281.Mahau_1997
Preferred namepbpA
KEGG rclassRC00005,RC00049
KEGG koko:K05364
KEGG ReactionR04519
KEGG Pathwayko00550,map00550
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.PFAM penicillin-binding protein transpeptidase
EggNOG OGs1TPER@1239,2486R@186801,42FRP@68295,COG0768@1,COG0768@2
COG Functional cat.M
Best tax levelThermoanaerobacterales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01011
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.14121-CDS-M-pyrifera_M_contig73595:0..1861622816633.14121-CDS-M-pyrifera_M_contig73595:0..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73595 1..186 +
1692278089.0458422-CDS-M-pyrifera_M_contig73595:0..1861692278089.0458422-CDS-M-pyrifera_M_contig73595:0..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73595 1..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73595.17440.1prot_M-pyrifera_M_contig73595.17440.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73595 1..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73595.17440.1

>prot_M-pyrifera_M_contig73595.17440.1 ID=prot_M-pyrifera_M_contig73595.17440.1|Name=mRNA_M-pyrifera_M_contig73595.17440.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
TGTAQAGGNREDHAWFVGYAPHERPKVAFAVALEHAGSGSLAAGPVARRV
IEQLHRLGYFDP
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mRNA from alignment at M-pyrifera_M_contig73595:1..186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73595.17440.1 ID=mRNA_M-pyrifera_M_contig73595.17440.1|Name=mRNA_M-pyrifera_M_contig73595.17440.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig73595:1..186+ (Macrocystis pyrifera P11B4 male)
ACCGGCACCGCGCAGGCCGGCGGAAACCGCGAAGATCACGCCTGGTTTGT CGGCTACGCTCCGCACGAACGCCCCAAGGTGGCCTTCGCCGTCGCCCTGG AACACGCCGGCAGTGGTTCACTGGCTGCCGGCCCCGTGGCAAGAAGGGTC ATCGAGCAACTCCATCGCCTCGGCTACTTCGACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73595:1..186+

>mRNA_M-pyrifera_M_contig73595.17440.1 ID=mRNA_M-pyrifera_M_contig73595.17440.1|Name=mRNA_M-pyrifera_M_contig73595.17440.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig73595:1..186+ (Macrocystis pyrifera P11B4 male)
ACCGGCACCGCGCAGGCCGGCGGAAACCGCGAAGATCACGCCTGGTTTGT
CGGCTACGCTCCGCACGAACGCCCCAAGGTGGCCTTCGCCGTCGCCCTGG
AACACGCCGGCAGTGGTTCACTGGCTGCCGGCCCCGTGGCAAGAAGGGTC
ATCGAGCAACTCCATCGCCTCGGCTACTTCGACCCGACCGGCACCGCGCA
GGCCGGCGGAAACCGCGAAGATCACGCCTGGTTTGTCGGCTACGCTCCGC
ACGAACGCCCCAAGGTGGCCTTCGCCGTCGCCCTGGAACACGCCGGCAGT
GGTTCACTGGCTGCCGGCCCCGTGGCAAGAAGGGTCATCGAGCAACTCCA
TCGCCTCGGCTACTTCGACCCG
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