mRNA_M-pyrifera_M_contig73545.17431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73545.17431.1
Unique NamemRNA_M-pyrifera_M_contig73545.17431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: A0A152A6B8_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6B8_9MYCE)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-9
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 QLEEIVNVSSPLEDVSMSDRVEKRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGGGI 258
            Q+  IVN+S   E     D     SR L+L LSDG++ IV IE R +  L+  I  GSK L RD  + RG++LL ESN ++LGG I
Sbjct:  101 QIISIVNISEDQEFRYQDDN--SHSRTLRLLLSDGYKQIVAIEHRFMSFLNHNIAPGSKALIRDVNIRRGIILLDESNMRILGGHI 184          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: A0A8C5LXV2_9ANUR (RecQ-mediated genome instability protein 1 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5LXV2_9ANUR)

HSP 1 Score: 65.1 bits (157), Expect = 2.220e-9
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 QLEEIVNVSSPLEDVSMSDRVEKR------SRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCR-GVLLLHESNCKLLGGGIKS 264
            QL+++    +P E V+ + +  +R      +R+L +  +DG   I G+E RP+PSL+A IP G+K+L +   +CR GVLLL   N K+LGG +++
Sbjct:  101 QLQKLKGRDNPNEQVTATTQATQRPWEAKPNRMLMIQFTDGTHQIQGMEYRPLPSLNANIPPGTKILLQGTIVCRLGVLLLKSENVKVLGGEVEA 195          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: UPI000644F776 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F776)

HSP 1 Score: 63.9 bits (154), Expect = 5.260e-9
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 QLEEIVNVSSPLEDVSMSDRVEKRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGGGIK 261
            Q+  + N+S P E    +DR E R+  LKL L+DG  +   +E + IP +  ++  G+KVL RD  + RG+LLL E+N ++LGG ++
Sbjct:    4 QINYVKNISQPFETRMDNDRSENRT--LKLHLTDGVHSFFAMEYQYIPFITPQLAPGTKVLVRDVPIRRGILLLDETNIRILGGSVQ 88          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: A0A2I0B975_9ASPA (RecQ-mediated genome instability protein 1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B975_9ASPA)

HSP 1 Score: 60.5 bits (145), Expect = 9.170e-8
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 QLEEIVNVSSPLEDVSMSDRVEKRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGGGIKS 264
            Q++EI N+SSPL +    D      R LKL L+DG + + G+E RP+  +    P G K++ R+ K+ RG+LLL      +LGG + S
Sbjct:  166 QVDEIANISSPLRE-RYHDSPPGLKRCLKLSLTDGVQRVFGLEYRPVSIMENLSPAGMKIVIRNVKVRRGLLLLLPEILVVLGGMVDS 252          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: F2UJ46_SALR5 (DUF1767 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJ46_SALR5)

HSP 1 Score: 57.8 bits (138), Expect = 7.900e-7
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   76 RLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLC-RDAKLCRGVLLLHESNCKLLGGGI 258
            +LLK+ L++G ++IVG+E +P+P LH     G+KVL  R  +  RG+LLL    C+LLGGG+
Sbjct:  156 QLLKIKLTNGVQSIVGMELKPLPFLHREATPGTKVLVKRGTRSMRGLLLLTPDTCRLLGGGV 217          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: A0A8D8F0R4_CULPI (RecQ-mediated genome instability protein 1 (Fragment) n=3 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8F0R4_CULPI)

HSP 1 Score: 56.6 bits (135), Expect = 1.870e-6
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   67 KRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLC-RGVLLLHESNCKLLGGGI 258
            K+ R+LKL LSDG +T+VG+E  PI +L  +IP G+K+L      C   VL L   N ++LGG +
Sbjct:  159 KKKRMLKLELSDGRKTVVGMEHSPIAALSTKIPPGTKLLLMGPIRCINKVLFLEPKNVRILGGEV 223          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: B0WAT3_CULQU (RecQ-mediated genome instability protein 1 n=6 Tax=Culex pipiens complex TaxID=518105 RepID=B0WAT3_CULQU)

HSP 1 Score: 56.6 bits (135), Expect = 2.000e-6
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   67 KRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLC-RGVLLLHESNCKLLGGGI 258
            K+ R+LKL LSDG +T+VG+E  PI +L  +IP G+K+L      C   VL L   N ++LGG +
Sbjct:  130 KKKRMLKLELSDGRKTVVGMEHSPIAALSTKIPPGTKMLLMGPIRCINKVLFLEPKNVRILGGEV 194          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: UPI000C6DECD6 (recQ-mediated genome instability protein 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DECD6)

HSP 1 Score: 56.2 bits (134), Expect = 2.120e-6
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   67 KRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCR-GVLLLHESNCKLLGGGIKS 264
            K +R+L L L+DG + + G+E +PIP LH ++P G+K+       CR GVL+L     K+LGG ++S
Sbjct:   62 KPTRMLMLTLTDGVQILKGMEYKPIPFLHTKLPSGTKISVFGPIECRLGVLILSAEKIKILGGAVES 128          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: A0A1S8VQJ7_9FUNG (DUF1767 domain-containing protein n=4 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VQJ7_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 2.600e-6
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    4 LEEIVNVSSPLEDVSMSDRVEKRS-----------RLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGGGI-----KSDSE 273
            ++E+ N S  + D+ +  + +K             ++L+L LSDG +T +GIE  PI  +     +G KVL  + ++ RGVLLL+ SN ++LGG +     KS SE
Sbjct:  101 IQEVGNASQQMLDLIVERKPKKGEPHISGELVIPRKMLRLHLSDGFQTCIGIEHTPIAQIDILSLLGMKVLISNVQVRRGVLLLNASNTRVLGGSVAEMNTKSGSE 206          
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Match: UPI001FB0DAE1 (recQ-mediated genome instability protein 1 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0DAE1)

HSP 1 Score: 56.2 bits (134), Expect = 2.690e-6
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 QLEEIVNVSSPLEDVSMSDRVEKRSRLLKLCLSDGHRTIVGIEQRPIPSLHARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGG 252
            Q++EIVN+S  L+     +      R LKL ++DG R++VG+E RPI  L    P G KV+ R+ ++ RG+++L     +++GG
Sbjct:  189 QVDEIVNISIALK-TRYQNANPGAKRCLKLSITDGVRSVVGMEYRPIKDLQVFSPSGMKVIIRNVQVRRGIMMLVPEVFEVVGG 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73545.17431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A152A6B8_9MYCE1.160e-945.35Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A8C5LXV2_9ANUR2.220e-937.89RecQ-mediated genome instability protein 1 n=1 Tax... [more]
UPI000644F7765.260e-939.08hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2I0B975_9ASPA9.170e-838.64RecQ-mediated genome instability protein 1 n=1 Tax... [more]
F2UJ46_SALR57.900e-746.77DUF1767 domain-containing protein n=1 Tax=Salpingo... [more]
A0A8D8F0R4_CULPI1.870e-644.62RecQ-mediated genome instability protein 1 (Fragme... [more]
B0WAT3_CULQU2.000e-644.62RecQ-mediated genome instability protein 1 n=6 Tax... [more]
UPI000C6DECD62.120e-641.79recQ-mediated genome instability protein 1-like n=... [more]
A0A1S8VQJ7_9FUNG2.600e-633.96DUF1767 domain-containing protein n=4 Tax=Batracho... [more]
UPI001FB0DAE12.690e-636.90recQ-mediated genome instability protein 1 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73545contigM-pyrifera_M_contig73545:120..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog554065.XP_005849946.1
Preferred nameRMI1
KEGG koko:K10990
KEGG Pathwayko03460,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000712,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0022402,GO:0022414,GO:0034641,GO:0035825,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045132,GO:0046483,GO:0048285,GO:0051304,GO:0051307,GO:0051321,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.DUF1767
EggNOG OGs2CM7N@1,2QPJ3@2759,34MGM@3041,37J80@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.6754563-CDS-M-pyrifera_M_contig73545:119..5841622816632.6754563-CDS-M-pyrifera_M_contig73545:119..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73545 120..584 +
1692278088.8004162-CDS-M-pyrifera_M_contig73545:119..5841692278088.8004162-CDS-M-pyrifera_M_contig73545:119..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73545 120..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73545.17431.1prot_M-pyrifera_M_contig73545.17431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73545 120..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73545.17431.1

>prot_M-pyrifera_M_contig73545.17431.1 ID=prot_M-pyrifera_M_contig73545.17431.1|Name=mRNA_M-pyrifera_M_contig73545.17431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
QLEEIVNVSSPLEDVSMSDRVEKRSRLLKLCLSDGHRTIVGIEQRPIPSL
HARIPVGSKVLCRDAKLCRGVLLLHESNCKLLGGGIKSDSEVVVLDDEDV
GEEGEEVVVVLTADRTSTVPAHPTASSSSSSSSSSSSSSSAAATTTTTTP
SSSSS
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mRNA from alignment at M-pyrifera_M_contig73545:120..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73545.17431.1 ID=mRNA_M-pyrifera_M_contig73545.17431.1|Name=mRNA_M-pyrifera_M_contig73545.17431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig73545:120..584+ (Macrocystis pyrifera P11B4 male)
CAGTTGGAGGAAATTGTGAATGTGTCTTCCCCATTAGAAGATGTGTCCAT GTCTGATCGTGTGGAGAAGCGTTCCAGATTGTTGAAATTGTGTCTTTCCG ATGGACATCGTACAATAGTTGGTATTGAGCAACGTCCAATCCCTTCATTA CATGCTAGAATCCCTGTAGGGAGTAAAGTATTATGCCGTGATGCTAAACT ATGTCGTGGTGTGCTTTTATTGCATGAATCCAACTGTAAGCTACTTGGGG GTGGCATTAAAAGTGACTCTGAAGTTGTCGTCCTTGATGATGAAGACGTT GGTGAAGAAGGTGAAGAAGTAGTAGTCGTATTAACAGCTGATAGAACATC TACAGTCCCAGCACACCCTACAGCATCATCATCATCATCATCATCATCAT CATCATCATCATCATCATCTGCAGCAGCCACTACCACAACCACAACCCCA TCTTCCTCCTCATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73545:120..584+

>mRNA_M-pyrifera_M_contig73545.17431.1 ID=mRNA_M-pyrifera_M_contig73545.17431.1|Name=mRNA_M-pyrifera_M_contig73545.17431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig73545:120..584+ (Macrocystis pyrifera P11B4 male)
CAGTTGGAGGAAATTGTGAATGTGTCTTCCCCATTAGAAGATGTGTCCAT
GTCTGATCGTGTGGAGAAGCGTTCCAGATTGTTGAAATTGTGTCTTTCCG
ATGGACATCGTACAATAGTTGGTATTGAGCAACGTCCAATCCCTTCATTA
CATGCTAGAATCCCTGTAGGGAGTAAAGTATTATGCCGTGATGCTAAACT
ATGTCGTGGTGTGCTTTTATTGCATGAATCCAACTGTAAGCTACTTGGGG
GTGGCATTAAAAGTGACTCTGAAGTTGTCGTCCTTGATGATGAAGACGTT
GGTGAAGAAGGTGAAGAAGTAGTAGTCGTATTAACAGCTGATAGAACATC
TACAGTCCCAGCACACCCTACAGCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCTGCAGCAGCCACTACCACAACCACAACCCCA
TCTTCCTCCTCATCTCAGTTGGAGGAAATTGTGAATGTGTCTTCCCCATT
AGAAGATGTGTCCATGTCTGATCGTGTGGAGAAGCGTTCCAGATTGTTGA
AATTGTGTCTTTCCGATGGACATCGTACAATAGTTGGTATTGAGCAACGT
CCAATCCCTTCATTACATGCTAGAATCCCTGTAGGGAGTAAAGTATTATG
CCGTGATGCTAAACTATGTCGTGGTGTGCTTTTATTGCATGAATCCAACT
GTAAGCTACTTGGGGGTGGCATTAAAAGTGACTCTGAAGTTGTCGTCCTT
GATGATGAAGACGTTGGTGAAGAAGGTGAAGAAGTAGTAGTCGTATTAAC
AGCTGATAGAACATCTACAGTCCCAGCACACCCTACAGCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCATCTGCAGCAGCCACTACC
ACAACCACAACCCCATCTTCCTCCTCATCT
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