mRNA_M-pyrifera_M_contig73531.17428.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73531.17428.1
Unique NamemRNA_M-pyrifera_M_contig73531.17428.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A2H1WPS1_SPOFR (SFRICE_019267 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WPS1_SPOFR)

HSP 1 Score: 97.8 bits (242), Expect = 1.810e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRGEEY 258
            +MR ERDT+GE+ VP    YGAQT+RS+ NFPIGGIE RMP  ++ AFGI+KK AAK+NM  G +D ++ EAIM A D+V  G+ Y
Sbjct:   15 KMRKERDTLGELEVPDDRLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNMEYG-LDKKLAEAIMHACDDVISGKLY 99
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BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A7S0PDS8_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PDS8_CAFRO)

HSP 1 Score: 97.8 bits (242), Expect = 3.390e-24
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    7 RVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADE 237
            R E+DTMGE+ VP    +GAQT RS+ NFPIGG ESRMP QI R+FGI KK AA++NMR GR+D  IG  I+ AADE
Sbjct:   70 RTEKDTMGELEVPTDRYWGAQTQRSLINFPIGGPESRMPAQIWRSFGIAKKCAAQVNMRMGRLDESIGSKIVAAADE 146
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BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: UPI001F594E2A (fumarate hydratase, mitochondrial-like n=3 Tax=Noctuidae TaxID=7100 RepID=UPI001F594E2A)

HSP 1 Score: 99.8 bits (247), Expect = 1.070e-22
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRGEEY 258
            +MR ERDTMGEV VP    YG+QT+RSI NFPIGGIE RMP  ++ AFGI+KK AAK+NM  G ++ ++ EAIMQA D+V  G+ Y
Sbjct:   14 KMRKERDTMGEVEVPDDRLYGSQTVRSIMNFPIGGIEERMPYPVIIAFGILKKAAAKVNMEYG-LEKKLAEAIMQACDDVISGKLY 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A5A8EHQ0_CAFRO (Fumarate hydratase n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8EHQ0_CAFRO)

HSP 1 Score: 99.8 bits (247), Expect = 1.220e-22
Identity = 50/78 (64.10%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    7 RVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEV 240
            R E+DTMGE+ VP    +GAQT RS+ NFPIGG ESRMP QI R+FGI KK AA++NMR GR+D  IG  I+ AADEV
Sbjct:   46 RTEKDTMGELEVPTDRYWGAQTQRSLINFPIGGPESRMPAQIWRSFGIAKKCAAQVNMRMGRLDESIGSKIVAAADEV 123
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BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A194RHG8_PAPMA (Fumarate hydratase n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RHG8_PAPMA)

HSP 1 Score: 99.0 bits (245), Expect = 1.880e-22
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRGEEY 258
            +MR E+DTMGE+ VP    YGAQT+RS+ NFPIGGIE RMP  ++ A GI+KK AAK+NM  G +D +I EAIMQAAD+V  G+ Y
Sbjct:   15 KMRKEKDTMGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVVVAMGILKKAAAKVNMEFG-LDKKIAEAIMQAADDVISGKLY 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A3Q3BKW3_KRYMA (Lyase_1 domain-containing protein n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3BKW3_KRYMA)

HSP 1 Score: 92.8 bits (229), Expect = 2.620e-22
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEV 240
            E RVERDT GE+ VPA   YGAQT+RS  NF IGG   RMP+Q+++AFGI+KK AA++N   G +D +I +AI+QAADE+
Sbjct:   38 EYRVERDTFGELKVPADKYYGAQTVRSTMNFKIGGPSERMPLQVIKAFGILKKAAAQVNKDYG-LDPKIADAIIQAADEL 116
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BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A833UIH2_JUGRE (Lyase_1 domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833UIH2_JUGRE)

HSP 1 Score: 93.2 bits (230), Expect = 2.660e-22
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    7 RVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRG 249
            R ERDT G +LVPA   +GAQT RS+ NF IGG   RMP  I+RAFGI+KK AAK+NM  G +D  IG+AIMQAA EV  G
Sbjct:   33 REERDTFGPILVPADKLWGAQTQRSLQNFDIGGERERMPEPIIRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEG 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A194QGT0_PAPXU (Fumarate hydratase n=6 Tax=Papilio TaxID=7145 RepID=A0A194QGT0_PAPXU)

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-22
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRGEEY 258
            +MR E+DTMGE+ VP    YGAQT+RSI NFPIGGIE RMP  ++ A GI+KK AAK+NM  G +D ++ EAIMQAAD+V  G+ Y
Sbjct:   15 KMRKEKDTMGELDVPDDKLYGAQTVRSIMNFPIGGIEERMPYPVVIAMGILKKAAAKVNMEFG-LDKKLAEAIMQAADDVISGKLY 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A3B4WM89_SERLL (Fumarate hydratase, mitochondrial-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WM89_SERLL)

HSP 1 Score: 92.8 bits (229), Expect = 3.680e-22
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEVRRG 249
            E R+ERDT GE+ VPA   YGAQT+RS  NF IGG   RMPIQ+++AFG++K+ AA++N   G ++ +I +AI+QAADEV  G
Sbjct:   38 EFRIERDTFGELKVPADKYYGAQTVRSTMNFKIGGPSERMPIQVIKAFGVLKRAAAEVNKEYG-LNPKIADAIIQAADEVSAG 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Match: A0A3P8U6M5_AMPPE (Lyase_1 domain-containing protein n=1 Tax=Amphiprion percula TaxID=161767 RepID=A0A3P8U6M5_AMPPE)

HSP 1 Score: 92.0 bits (227), Expect = 4.720e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 EMRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIVKKVAAKINMREGRIDGRIGEAIMQAADEV 240
            E RVERDT GE+ VPA   YGAQT+RS  NF IGG   RMP+ +++AFGI+KK AA++N   G +D +I +AI+QAADEV
Sbjct:   38 EFRVERDTFGELKVPADRYYGAQTVRSTMNFKIGGPSERMPLPVIKAFGILKKAAAEVNKDYG-LDPKIADAIVQAADEV 116
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73531.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H1WPS1_SPOFR1.810e-2458.14SFRICE_019267 (Fragment) n=1 Tax=Spodoptera frugip... [more]
A0A7S0PDS8_CAFRO3.390e-2463.64Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
UPI001F594E2A1.070e-2260.47fumarate hydratase, mitochondrial-like n=3 Tax=Noc... [more]
A0A5A8EHQ0_CAFRO1.220e-2264.10Fumarate hydratase n=3 Tax=Sar TaxID=2698737 RepID... [more]
A0A194RHG8_PAPMA1.880e-2260.47Fumarate hydratase n=1 Tax=Papilio machaon TaxID=7... [more]
A0A3Q3BKW3_KRYMA2.620e-2258.75Lyase_1 domain-containing protein n=1 Tax=Kryptole... [more]
A0A833UIH2_JUGRE2.660e-2261.73Lyase_1 domain-containing protein n=1 Tax=Juglans ... [more]
A0A194QGT0_PAPXU2.800e-2260.47Fumarate hydratase n=6 Tax=Papilio TaxID=7145 RepI... [more]
A0A3B4WM89_SERLL3.680e-2255.42Fumarate hydratase, mitochondrial-like n=1 Tax=Ser... [more]
A0A3P8U6M5_AMPPE4.720e-2258.75Lyase_1 domain-containing protein n=1 Tax=Amphipri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73531contigM-pyrifera_M_contig73531:832..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score95.9
Seed ortholog evalue9.7e-18
Seed eggNOG ortholog7955.ENSDARP00000097494
Preferred nameFH
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
Hectar predicted targeting categoryother localisation
GOsGO:0001894,GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048871,GO:0048872,GO:0048873,GO:0055114,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072350
EggNOG free text desc.Fumarate hydratase
EggNOG OGs38GHX@33154,3BB3C@33208,3CUSS@33213,487GR@7711,490UB@7742,49QM8@7898,COG0114@1,KOG1317@2759
EC4.2.1.2
COG Functional cat.C
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size258
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.5392158-UTR-M-pyrifera_M_contig73531:831..8341622816632.5392158-UTR-M-pyrifera_M_contig73531:831..834Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73531 832..834 +
1692278088.73413-UTR-M-pyrifera_M_contig73531:831..8341692278088.73413-UTR-M-pyrifera_M_contig73531:831..834Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73531 832..834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.5605974-CDS-M-pyrifera_M_contig73531:834..10891622816632.5605974-CDS-M-pyrifera_M_contig73531:834..1089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73531 835..1089 +
1692278088.7497213-CDS-M-pyrifera_M_contig73531:834..10891692278088.7497213-CDS-M-pyrifera_M_contig73531:834..1089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73531 835..1089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73531.17428.1prot_M-pyrifera_M_contig73531.17428.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73531 835..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73531.17428.1

>prot_M-pyrifera_M_contig73531.17428.1 ID=prot_M-pyrifera_M_contig73531.17428.1|Name=mRNA_M-pyrifera_M_contig73531.17428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MRVERDTMGEVLVPASARYGAQTMRSIHNFPIGGIESRMPIQIMRAFGIV
KKVAAKINMREGRIDGRIGEAIMQAADEVRRGEEY
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mRNA from alignment at M-pyrifera_M_contig73531:832..1089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73531.17428.1 ID=mRNA_M-pyrifera_M_contig73531.17428.1|Name=mRNA_M-pyrifera_M_contig73531.17428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig73531:832..1089+ (Macrocystis pyrifera P11B4 male)
GAAATGCGTGTTGAACGCGATACGATGGGAGAAGTTCTCGTGCCTGCTTC
CGCTCGCTATGGAGCTCAAACGATGCGATCCATCCACAACTTTCCAATTG
GAGGCATTGAAAGCAGAATGCCCATCCAAATCATGCGTGCTTTTGGAATT
GTCAAAAAAGTTGCCGCCAAAATCAACATGCGCGAAGGACGGATTGATGG
ACGCATCGGAGAAGCGATCATGCAAGCTGCAGATGAAGTAAGGCGTGGAG
AGGAGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73531:832..1089+

>mRNA_M-pyrifera_M_contig73531.17428.1 ID=mRNA_M-pyrifera_M_contig73531.17428.1|Name=mRNA_M-pyrifera_M_contig73531.17428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig73531:832..1089+ (Macrocystis pyrifera P11B4 male)
ATGCGTGTTGAACGCGATACGATGGGAGAAGTTCTCGTGCCTGCTTCCGC
TCGCTATGGAGCTCAAACGATGCGATCCATCCACAACTTTCCAATTGGAG
GCATTGAAAGCAGAATGCCCATCCAAATCATGCGTGCTTTTGGAATTGTC
AAAAAAGTTGCCGCCAAAATCAACATGCGCGAAGGACGGATTGATGGACG
CATCGGAGAAGCGATCATGCAAGCTGCAGATGAAGTAAGGCGTGGAGAGG
AGTATATGCGTGTTGAACGCGATACGATGGGAGAAGTTCTCGTGCCTGCT
TCCGCTCGCTATGGAGCTCAAACGATGCGATCCATCCACAACTTTCCAAT
TGGAGGCATTGAAAGCAGAATGCCCATCCAAATCATGCGTGCTTTTGGAA
TTGTCAAAAAAGTTGCCGCCAAAATCAACATGCGCGAAGGACGGATTGAT
GGACGCATCGGAGAAGCGATCATGCAAGCTGCAGATGAAGTAAGGCGTGG
AGAGGAGTAT
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