mRNA_M-pyrifera_M_contig73353.17400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73353.17400.1
Unique NamemRNA_M-pyrifera_M_contig73353.17400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73353.17400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73353contigM-pyrifera_M_contig73353:13..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73353.17400.1prot_M-pyrifera_M_contig73353.17400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73353 200..529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.8725746-UTR-M-pyrifera_M_contig73353:12..1991622816630.8725746-UTR-M-pyrifera_M_contig73353:12..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73353 13..199 +
1692278087.7366168-UTR-M-pyrifera_M_contig73353:12..1991692278087.7366168-UTR-M-pyrifera_M_contig73353:12..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73353 13..199 +
1622816630.9008899-UTR-M-pyrifera_M_contig73353:529..5501622816630.9008899-UTR-M-pyrifera_M_contig73353:529..550Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73353 530..550 +
1692278087.7591028-UTR-M-pyrifera_M_contig73353:529..5501692278087.7591028-UTR-M-pyrifera_M_contig73353:529..550Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73353 530..550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.8862064-CDS-M-pyrifera_M_contig73353:199..5291622816630.8862064-CDS-M-pyrifera_M_contig73353:199..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73353 200..529 +
1692278087.7494256-CDS-M-pyrifera_M_contig73353:199..5291692278087.7494256-CDS-M-pyrifera_M_contig73353:199..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73353 200..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73353.17400.1

>prot_M-pyrifera_M_contig73353.17400.1 ID=prot_M-pyrifera_M_contig73353.17400.1|Name=mRNA_M-pyrifera_M_contig73353.17400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MANSISTQINEQFGNAEELNYARSKRRQVLLCRGERREEKRSLACLLVAT
AIAMVQNARMPLTVKIKPPTSYELESKSDGLKNTEVSPTHPSIHPCMRAS
SSVLLLAIQ*
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mRNA from alignment at M-pyrifera_M_contig73353:13..550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73353.17400.1 ID=mRNA_M-pyrifera_M_contig73353.17400.1|Name=mRNA_M-pyrifera_M_contig73353.17400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=538bp|location=Sequence derived from alignment at M-pyrifera_M_contig73353:13..550+ (Macrocystis pyrifera P11B4 male)
GTCCTCTCTCGCCTGTTACGGCGTTATTATTTGTAGCACGTGTCCCTTCG
TATCAACGGTAGACCGTCATCCTTGCTGGTGGATGTACCGGAGTTCGAAT
CTCGGCTGGTGTGTTTTATTTACACACTATTAATAGTGTTTTTTTTCTGA
GTTTTCTTCCGATGGCGAAAGTGCGAGACTGCGCGAGATGGCAAACTCGA
TATCGACCCAAATCAACGAGCAGTTTGGGAATGCTGAAGAACTCAACTAT
GCGCGATCCAAACGAAGGCAGGTACTGCTGTGCCGGGGGGAGAGAAGGGA
AGAAAAACGTTCGCTCGCTTGCTTGCTTGTGGCCACGGCTATTGCTATGG
TCCAGAACGCCAGAATGCCGCTGACGGTCAAAATTAAACCTCCCACGAGT
TACGAGCTGGAAAGTAAAAGCGATGGTCTAAAAAATACGGAAGTGAGCCC
CACGCATCCATCCATCCATCCATGCATGCGTGCGTCATCGTCCGTGTTGC
TGCTTGCAATACAGTAGTGGCACCAACAACCGAGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73353:13..550+

>mRNA_M-pyrifera_M_contig73353.17400.1 ID=mRNA_M-pyrifera_M_contig73353.17400.1|Name=mRNA_M-pyrifera_M_contig73353.17400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig73353:13..550+ (Macrocystis pyrifera P11B4 male)
ATGGCAAACTCGATATCGACCCAAATCAACGAGCAGTTTGGGAATGCTGA
AGAACTCAACTATGCGCGATCCAAACGAAGGCAGGTACTGCTGTGCCGGG
GGGAGAGAAGGGAAGAAAAACGTTCGCTCGCTTGCTTGCTTGTGGCCACG
GCTATTGCTATGGTCCAGAACGCCAGAATGCCGCTGACGGTCAAAATTAA
ACCTCCCACGAGTTACGAGCTGGAAAGTAAAAGCGATGGTCTAAAAAATA
CGGAAGTGAGCCCCACGCATCCATCCATCCATCCATGCATGCGTGCGTCA
TCGTCCGTGTTGCTGCTTGCAATACAGTAGATGGCAAACTCGATATCGAC
CCAAATCAACGAGCAGTTTGGGAATGCTGAAGAACTCAACTATGCGCGAT
CCAAACGAAGGCAGGTACTGCTGTGCCGGGGGGAGAGAAGGGAAGAAAAA
CGTTCGCTCGCTTGCTTGCTTGTGGCCACGGCTATTGCTATGGTCCAGAA
CGCCAGAATGCCGCTGACGGTCAAAATTAAACCTCCCACGAGTTACGAGC
TGGAAAGTAAAAGCGATGGTCTAAAAAATACGGAAGTGAGCCCCACGCAT
CCATCCATCCATCCATGCATGCGTGCGTCATCGTCCGTGTTGCTGCTTGC
AATACAGTAG
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