mRNA_M-pyrifera_M_contig73343.17396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73343.17396.1
Unique NamemRNA_M-pyrifera_M_contig73343.17396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A348AL84_9FIRM (Corrinoid ABC transporter substrate-binding protein n=1 Tax=Methylomusa anaerophila TaxID=1930071 RepID=A0A348AL84_9FIRM)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-7
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  127 ERIIGLPSAFDEYINVTLPAELLDPDRRFPEFNAELLLALDPDLIIAGSWIPAESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            ER++ L    D+    T+ AE      R  E+NAE +L+L PDL+IA  W   E ++ L   G+ V+V    + +  ++ AIR++   +G EA  + LL
Sbjct:   96 ERVVALHYLADDPGISTIAAEAGRVPVRLQEYNAEQILSLQPDLVIAPDWSRIELIQTLRDMGIPVFVSKGPSSVAEVKQAIREISQAIGEEAAGSRLL 194          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: UPI00128B47D1 (ABC transporter substrate-binding protein n=1 Tax=Oceanobacillus sp. CFH 90083 TaxID=2592336 RepID=UPI00128B47D1)

HSP 1 Score: 54.7 bits (130), Expect = 5.400e-6
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   55 ERVVLATAPAVDLAFDLLGSEAATERIIGLPSAFDEYINVTLPAELLDPDR-RFPEFNAELLLALDPDLIIAGSWIPA---ESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            ER+V       ++AF L       ++++G+        N T P E+LD D     EFN E++++LDPD+++A +   A   E++E L  A +DV+ +   TD+D     I ++G  +G E  A +L+
Sbjct:   71 ERIVSLMPSNTEIAFAL----GQGDKVVGVSE------NDTYPDEVLDIDTVGGMEFNVEVIISLDPDVVLAHASQVASSQEALEQLEDADIDVFTVADATDVDTTYETIENIGQVVGAEEEAEQLV 187          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A7Y4XK35_HYPSQ (ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XK35_HYPSQ)

HSP 1 Score: 53.5 bits (127), Expect = 1.290e-5
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  223 NAELLLALDPDLIIAGSWIPAESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
             AE +LAL PDL+IAG +    +V+ L   G +V ++P  TD D +R  +R + A +G  ARA ++L
Sbjct:   86 TAEEVLALKPDLVIAGEYTTGATVDLLRRLGQNVLIVPMATDFDGMRKTVRQIAAAVGEMARAEKVL 152          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A6N7AA95_9CHLR (Iron complex transport system substrate-binding protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A6N7AA95_9CHLR)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-5
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   43 PATAERVVLATAPAVDLAFDLLGSEAATERIIGLPSAFDEYINVTLPAE---LLDPDRRFPEFNAELLLALDPDLIIAGSWIPAESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            PA A+RVV + AP+     ++L +  A  +++G    F +Y     PAE   + D      E+N E ++AL PDL++AG   P E V  L   G+ VY +P    L+ + A +  VGA  G  + AA L+
Sbjct:   49 PAPAQRVV-SLAPSNT---EILFAVGAGAQVVGR-DMFSDY-----PAEAASVQDIGGSMGEYNLEAIVALQPDLVLAGGINPPELVASLEGLGLTVYFLPNPATLEEMYANLETVGALTGRGSEAAALV 168          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A3B9PYY0_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A3B9PYY0_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 6.320e-5
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  100 DLLGSEAATERIIGLPSAFDEYINVTLPAE---LLDPDRRFPEFNAELLLALDPDLIIAGSWIPAESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            +LL    A ++++G  S F +Y     PA+   L D    + E+N E+LL+L+PDL++A     AE V+ +   G+ V+ +     LD +   I+DVG   G E  A +++
Sbjct:   73 ELLYVVGAGDQVVGRDS-FSDY-----PADASALPDIGGGYSEYNLEMLLSLEPDLVLAAEINTAELVQSIEDLGIQVFYIKNPLTLDDLYTTIQDVGLLSGHEDAAQQVI 177          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A511ZPY8_9BACI (Putative ABC transporter substrate-binding lipoprotein YvrC n=3 Tax=Oceanobacillus TaxID=182709 RepID=A0A511ZPY8_9BACI)

HSP 1 Score: 51.6 bits (122), Expect = 6.430e-5
Identity = 29/89 (32.58%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  169 NVTLPAELLDPDR-RFPEFNAELLLALDPDLIIAGSWIPA---ESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            N T P E+ D D+    EFN E++++LDPD+++A   + A   E+++ L  A ++V+ +   TD+D     I ++G  +G E  A +L+
Sbjct:   99 NDTYPEEVFDIDKVGGMEFNVEVIISLDPDVVLAHESLVASSQEALDQLEGADIEVFTVADATDVDTTYETIDNIGQVVGAEEEAEQLV 187          
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Match: A0A7X0B171_9PROT (Iron complex transport system substrate-binding protein n=2 Tax=Nitrospirillum iridis TaxID=765888 RepID=A0A7X0B171_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 8.280e-5
Identity = 44/144 (30.56%), Postives = 65/144 (45.14%), Query Frame = 1
Query:   46 ATAERVVLATAPAVDLAFDLLGSEAATERIIGLPSAFDEYINVTLPAELL--------DPDRRF----------PEFNAELLLALDPDLIIAGSWIPAESVEHLTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL 423
            A A  +VLA APA   A  L  +     R++ L    D+   + LP   +        DP+  +           E  AE LLAL PDL++AG++    +V    +  + V  +  + D D IRA +R V A LG  A+  +LL
Sbjct:   10 AAAMTLVLAMAPAAAAA-SLARAGEPPRRVVSLNLCTDQLAALLLPPGRIAALSRLARDPELSYVATRIEGIAVTEGGAEELLALKPDLVLAGTYTAQPAVRMAKAHHIPVVQVGLIADFDGIRAQVRTVAAALGESAKGEDLL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73343.17396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A348AL84_9FIRM1.310e-733.33Corrinoid ABC transporter substrate-binding protei... [more]
UPI00128B47D15.400e-630.71ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7Y4XK35_HYPSQ1.290e-540.30ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A6N7AA95_9CHLR1.800e-533.85Iron complex transport system substrate-binding pr... [more]
A0A3B9PYY0_9CHLR6.320e-531.53ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A511ZPY8_9BACI6.430e-532.58Putative ABC transporter substrate-binding lipopro... [more]
A0A7X0B171_9PROT8.280e-530.56Iron complex transport system substrate-binding pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73343contigM-pyrifera_M_contig73343:2..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue9.8e-07
Seed eggNOG ortholog889378.Spiaf_2246
Preferred namehmuT
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.abc-type fe3 -hydroxamate transport system, periplasmic component
EggNOG OGsCOG0614@1,COG0614@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.7384796-CDS-M-pyrifera_M_contig73343:1..4241622816630.7384796-CDS-M-pyrifera_M_contig73343:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73343 2..424 -
1692278087.6741757-CDS-M-pyrifera_M_contig73343:1..4241692278087.6741757-CDS-M-pyrifera_M_contig73343:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73343 2..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73343.17396.1prot_M-pyrifera_M_contig73343.17396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73343 2..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73343.17396.1

>prot_M-pyrifera_M_contig73343.17396.1 ID=prot_M-pyrifera_M_contig73343.17396.1|Name=mRNA_M-pyrifera_M_contig73343.17396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
PLLAACADTTPADAPATAERVVLATAPAVDLAFDLLGSEAATERIIGLPS
AFDEYINVTLPAELLDPDRRFPEFNAELLLALDPDLIIAGSWIPAESVEH
LTSAGVDVYVMPTVTDLDHIRAAIRDVGARLGVEARAAELL
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mRNA from alignment at M-pyrifera_M_contig73343:2..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73343.17396.1 ID=mRNA_M-pyrifera_M_contig73343.17396.1|Name=mRNA_M-pyrifera_M_contig73343.17396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig73343:2..424- (Macrocystis pyrifera P11B4 male)
CCCCTGCTCGCCGCCTGCGCCGACACGACGCCCGCCGATGCGCCAGCGAC CGCCGAGCGCGTCGTGCTCGCCACCGCTCCCGCCGTCGACCTGGCCTTCG ACCTGCTCGGTTCCGAGGCCGCGACCGAGCGCATCATCGGCCTCCCGTCG GCCTTCGACGAGTACATCAACGTGACGCTGCCCGCAGAGCTGCTCGACCC CGACCGCCGCTTCCCGGAGTTCAACGCCGAGCTGCTGCTCGCCCTCGACC CGGACCTGATCATCGCCGGCTCGTGGATCCCCGCCGAGTCCGTCGAGCAC CTGACCTCGGCCGGCGTCGACGTGTACGTCATGCCGACCGTCACGGACCT CGACCACATCCGCGCAGCGATCCGCGACGTCGGCGCGCGGCTCGGCGTCG AAGCGCGCGCGGCGGAGCTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73343:2..424-

>mRNA_M-pyrifera_M_contig73343.17396.1 ID=mRNA_M-pyrifera_M_contig73343.17396.1|Name=mRNA_M-pyrifera_M_contig73343.17396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig73343:2..424- (Macrocystis pyrifera P11B4 male)
CCCCTGCTCGCCGCCTGCGCCGACACGACGCCCGCCGATGCGCCAGCGAC
CGCCGAGCGCGTCGTGCTCGCCACCGCTCCCGCCGTCGACCTGGCCTTCG
ACCTGCTCGGTTCCGAGGCCGCGACCGAGCGCATCATCGGCCTCCCGTCG
GCCTTCGACGAGTACATCAACGTGACGCTGCCCGCAGAGCTGCTCGACCC
CGACCGCCGCTTCCCGGAGTTCAACGCCGAGCTGCTGCTCGCCCTCGACC
CGGACCTGATCATCGCCGGCTCGTGGATCCCCGCCGAGTCCGTCGAGCAC
CTGACCTCGGCCGGCGTCGACGTGTACGTCATGCCGACCGTCACGGACCT
CGACCACATCCGCGCAGCGATCCGCGACGTCGGCGCGCGGCTCGGCGTCG
AAGCGCGCGCGGCGGAGCTGCTCCCCCTGCTCGCCGCCTGCGCCGACACG
ACGCCCGCCGATGCGCCAGCGACCGCCGAGCGCGTCGTGCTCGCCACCGC
TCCCGCCGTCGACCTGGCCTTCGACCTGCTCGGTTCCGAGGCCGCGACCG
AGCGCATCATCGGCCTCCCGTCGGCCTTCGACGAGTACATCAACGTGACG
CTGCCCGCAGAGCTGCTCGACCCCGACCGCCGCTTCCCGGAGTTCAACGC
CGAGCTGCTGCTCGCCCTCGACCCGGACCTGATCATCGCCGGCTCGTGGA
TCCCCGCCGAGTCCGTCGAGCACCTGACCTCGGCCGGCGTCGACGTGTAC
GTCATGCCGACCGTCACGGACCTCGACCACATCCGCGCAGCGATCCGCGA
CGTCGGCGCGCGGCTCGGCGTCGAAGCGCGCGCGGCGGAGCTGCTC
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