mRNA_M-pyrifera_M_contig73305.17387.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73305.17387.1
Unique NamemRNA_M-pyrifera_M_contig73305.17387.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73305.17387.1 vs. uniprot
Match: A0A2R5GSL0_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSL0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.950e-6
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 1 
Query:   31 EVLSTLRSEVRKLRRDGLSTRKAVAQVFEEFDSRGRGSVRLSDFRRGLRKLGLRLRQAEERKVAEVFDGDGDGEVSVEEFASFVGGPEMSESESKTMEKVRRTVRAAAKKRGKGVRD---VFSDMDKDGNGVLTRVEVEKGLRQLRVKLSR 474
            +VLS LR+ V+K    G+S    + + F  FD+   G +  S+F+ GL+KLGL+L   E   +   F   G   + +  F   +G   +  + + T++K+   +RA  ++R K   D    F   D+DG   +T  ++E GLR L V  SR
Sbjct:  861 DVLSRLRTLVQKAASQGVS----MVESFAHFDANSDGLITRSEFKLGLKKLGLKLGTRELEVLMTEFKVPGGDFIDITHFFKAMGP--VKTTPAVTVDKLLEDLRALLRERQKHGADNQICFEYFDRDGTRSITERQLEDGLRDLNVSASR 1005
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73305.17387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5GSL0_9STRA4.950e-631.13Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73305contigM-pyrifera_M_contig73305:619..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue7e-09
Seed eggNOG ortholog44056.XP_009034409.1
KEGG koko:K02183,ko:K09338,ko:K14684,ko:K15100,ko:K16466
KEGG TC1.I.1,2.A.29.23,2.A.29.7
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0032@1,KOG0032@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03000,ko03019,ko03036,ko04131,ko04147
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.340735-CDS-M-pyrifera_M_contig73305:618..11011622816630.340735-CDS-M-pyrifera_M_contig73305:618..1101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73305 619..1101 +
1692278087.4293675-CDS-M-pyrifera_M_contig73305:618..11011692278087.4293675-CDS-M-pyrifera_M_contig73305:618..1101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73305 619..1101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73305.17387.1prot_M-pyrifera_M_contig73305.17387.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73305 619..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73305.17387.1

>prot_M-pyrifera_M_contig73305.17387.1 ID=prot_M-pyrifera_M_contig73305.17387.1|Name=mRNA_M-pyrifera_M_contig73305.17387.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MRDEHALLPPEVLSTLRSEVRKLRRDGLSTRKAVAQVFEEFDSRGRGSVR
LSDFRRGLRKLGLRLRQAEERKVAEVFDGDGDGEVSVEEFASFVGGPEMS
ESESKTMEKVRRTVRAAAKKRGKGVRDVFSDMDKDGNGVLTRVEVEKGLR
QLRVKLSRKEM
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mRNA from alignment at M-pyrifera_M_contig73305:619..1101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73305.17387.1 ID=mRNA_M-pyrifera_M_contig73305.17387.1|Name=mRNA_M-pyrifera_M_contig73305.17387.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig73305:619..1101+ (Macrocystis pyrifera P11B4 male)
ATGAGGGACGAGCACGCTCTCCTCCCGCCTGAGGTATTGTCCACGCTGCG
GTCTGAGGTGCGGAAGCTGCGGCGAGACGGTTTGTCGACGCGCAAGGCGG
TGGCGCAAGTGTTCGAGGAGTTCGACTCCCGCGGGCGGGGCAGCGTGCGA
CTGTCCGACTTCCGTCGAGGGCTGCGCAAGCTGGGGCTGCGGCTTCGGCA
GGCGGAGGAGCGCAAGGTGGCGGAGGTGTTCGACGGCGACGGCGACGGGG
AGGTGAGCGTGGAGGAGTTCGCGTCGTTCGTGGGCGGGCCGGAGATGTCG
GAGAGCGAGTCGAAGACGATGGAGAAGGTGCGGCGCACGGTGCGTGCTGC
GGCGAAGAAGCGGGGCAAGGGTGTGCGGGACGTGTTCAGCGACATGGACA
AGGACGGGAACGGGGTGTTGACTCGGGTGGAGGTGGAGAAGGGGCTGCGC
CAGCTGCGGGTGAAGCTGAGTCGGAAGGAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73305:619..1101+

>mRNA_M-pyrifera_M_contig73305.17387.1 ID=mRNA_M-pyrifera_M_contig73305.17387.1|Name=mRNA_M-pyrifera_M_contig73305.17387.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig73305:619..1101+ (Macrocystis pyrifera P11B4 male)
ATGAGGGACGAGCACGCTCTCCTCCCGCCTGAGGTATTGTCCACGCTGCG
GTCTGAGGTGCGGAAGCTGCGGCGAGACGGTTTGTCGACGCGCAAGGCGG
TGGCGCAAGTGTTCGAGGAGTTCGACTCCCGCGGGCGGGGCAGCGTGCGA
CTGTCCGACTTCCGTCGAGGGCTGCGCAAGCTGGGGCTGCGGCTTCGGCA
GGCGGAGGAGCGCAAGGTGGCGGAGGTGTTCGACGGCGACGGCGACGGGG
AGGTGAGCGTGGAGGAGTTCGCGTCGTTCGTGGGCGGGCCGGAGATGTCG
GAGAGCGAGTCGAAGACGATGGAGAAGGTGCGGCGCACGGTGCGTGCTGC
GGCGAAGAAGCGGGGCAAGGGTGTGCGGGACGTGTTCAGCGACATGGACA
AGGACGGGAACGGGGTGTTGACTCGGGTGGAGGTGGAGAAGGGGCTGCGC
CAGCTGCGGGTGAAGCTGAGTCGGAAGGAGATGATGAGGGACGAGCACGC
TCTCCTCCCGCCTGAGGTATTGTCCACGCTGCGGTCTGAGGTGCGGAAGC
TGCGGCGAGACGGTTTGTCGACGCGCAAGGCGGTGGCGCAAGTGTTCGAG
GAGTTCGACTCCCGCGGGCGGGGCAGCGTGCGACTGTCCGACTTCCGTCG
AGGGCTGCGCAAGCTGGGGCTGCGGCTTCGGCAGGCGGAGGAGCGCAAGG
TGGCGGAGGTGTTCGACGGCGACGGCGACGGGGAGGTGAGCGTGGAGGAG
TTCGCGTCGTTCGTGGGCGGGCCGGAGATGTCGGAGAGCGAGTCGAAGAC
GATGGAGAAGGTGCGGCGCACGGTGCGTGCTGCGGCGAAGAAGCGGGGCA
AGGGTGTGCGGGACGTGTTCAGCGACATGGACAAGGACGGGAACGGGGTG
TTGACTCGGGTGGAGGTGGAGAAGGGGCTGCGCCAGCTGCGGGTGAAGCT
GAGTCGGAAGGAGATG
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